Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog ModE3 - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: ModE
Regulation mode:
Biological process: Tungsten homeostasis
Effector: Tungsten
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N
Bordetella bronchiseptica RB50 4 2
Bordetella petrii DSM 12804 11 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
fdoX
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
*
Bordetella petrii DSM 12804

Site:
position = -2
score = 6.1879
sequence = GTATGCAAAGCATTTCATAT

Gene: Bpet4663: Putative subunit of formate dehydrogenase
Putative subunit of formate dehydrogenase
fdoG
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB2121: Formate dehydrogenase-O, major subunit (EC 1.2.1.2)
 
Bordetella petrii DSM 12804

Gene: Bpet4662: Formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Formate dehydrogenase-O, major subunit (EC 1.2.1.2)
fdoH
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB2122: Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2)
 
Bordetella petrii DSM 12804

Gene: Bpet4661: Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2)
Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2)
fdoY
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB2123: Putative subunit of formate dehydrogenase
 
Bordetella petrii DSM 12804

Gene: Bpet4660: Putative subunit of formate dehydrogenase
Putative subunit of formate dehydrogenase
fdoI
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB2124: Formate dehydrogenase-O, gamma subunit (EC 1.2.1.2)
 
Bordetella petrii DSM 12804

Gene: Bpet4659: Formate dehydrogenase-O, gamma subunit (EC 1.2.1.2)
Formate dehydrogenase-O, gamma subunit (EC 1.2.1.2)
fdoZ
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB2125: Putative subunit of formate dehydrogenase
 
Bordetella petrii DSM 12804

Gene: Bpet4658: Putative subunit of formate dehydrogenase
Putative subunit of formate dehydrogenase
fdhD
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet4657: Formate dehydrogenase chain D (EC 1.2.1.2)
Formate dehydrogenase chain D (EC 1.2.1.2)
 
CRON 2.
modE3
 
Bordetella avium 197N
*
Bordetella bronchiseptica RB50

Site:
position = -100
score = 6.06855
sequence = ATATGAAACGAATTGCATAG

Gene: BB2126: Molybdate-responsive transcriptional regulator ModE
*
Bordetella petrii DSM 12804

Site:
position = -67
score = 6.07182
sequence = ATATGAATAACTTTGCATAG

Gene: Bpet4656: Molybdate-responsive transcriptional regulator ModE
Molybdate-responsive transcriptional regulator ModE
 
CRON 3.
tupA
 
Bordetella avium 197N
*
Bordetella bronchiseptica RB50

Site:
position = -81
score = 6.06855
sequence = CTATGCAATTCGTTTCATAT

Gene: BB2127: Tungstate ABC-type transporter, permease protein
*
Bordetella petrii DSM 12804

Site:
position = -74
score = 6.07182
sequence = CTATGCAAAGTTATTCATAT

Gene: Bpet4655: Tungstate ABC-type transporter, permease protein
Tungstate ABC-type transporter, permease protein
tupC
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB2128: Tungstate ABC-type transporter, ATP-binding protein
 
Bordetella petrii DSM 12804

Gene: Bpet4654: Tungstate ABC-type transporter, ATP-binding protein
Tungstate ABC-type transporter, ATP-binding protein
tupB
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB2129: Tungstate ABC-type transporter, substrate-binding protein
 
Bordetella petrii DSM 12804

Gene: Bpet4653: Tungstate ABC-type transporter, substrate-binding protein
Tungstate ABC-type transporter, substrate-binding protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD