Regulog ModE3 - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	ModE
Regulation mode:	repressor (activator)
Biological process:	Tungsten homeostasis
Effector:	Tungsten
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 12 sites [see more]

Member of regulog collections

By trascription factor - ModE
By taxonomy - Comamonadaceae
By TF family - ModE
By effector - Tungsten
By pathway - Tungsten homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42	8	2
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6	12	2
Methylibium petroleiphilum PM1	4	1
Polaromonas naphthalenivorans CJ2	8	2
Polaromonas sp. JS666	10	2
Rhodoferax ferrireducens DSM 15236	10	2
Variovorax paradoxus S110	3	1
Verminephrobacter eiseniae EF01-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
Ajs_3943	Acidovorax avenae subsp. citrulli AAC00-1	* Acidovorax sp. JS42 Site: position = -65 score = 6.44664 sequence = CTATGCAAATCTTTTCATAG Gene: Ajs_3943: NADH-dependent dehydrogenase, iron-sulfur binding protein	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	* Leptothrix cholodnii SP-6 Site: position = -91 score = 6.17166 sequence = CTATGCAGATGATTGCATAG Gene: Lcho_1816: NADH-dependent dehydrogenase, iron-sulfur binding protein	Methylibium petroleiphilum PM1 Gene: Mpe_A2582: NADH-dependent dehydrogenase, iron-sulfur binding protein	* Polaromonas naphthalenivorans CJ2 Site: position = -60 score = 5.94604 sequence = CTATGCAAATCAATTCATAG Gene: Pnap_0048: NADH-dependent dehydrogenase, iron-sulfur binding protein	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2851: NADH-dependent dehydrogenase, iron-sulfur binding protein	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	NADH-dependent dehydrogenase, iron-sulfur binding protein
Ajs_3944	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_3944: Tungsten-containing aldehyde ferredoxin oxidoreductase	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1817: Tungsten-containing aldehyde ferredoxin oxidoreductase	Methylibium petroleiphilum PM1 Gene: Mpe_A2581: Tungsten-containing aldehyde ferredoxin oxidoreductase	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0049: Tungsten-containing aldehyde ferredoxin oxidoreductase	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2850: Tungsten-containing aldehyde ferredoxin oxidoreductase	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Tungsten-containing aldehyde ferredoxin oxidoreductase
Ajs_3945	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_3945: NADH-dependent dehydrogenase, NADH-binding subunit	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1818: NADH-dependent dehydrogenase, NADH-binding subunit	Methylibium petroleiphilum PM1 Gene: Mpe_A2580: NADH-dependent dehydrogenase, NADH-binding subunit	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0050: NADH-dependent dehydrogenase, NADH-binding subunit	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2849: NADH-dependent dehydrogenase, NADH-binding subunit	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	NADH-dependent dehydrogenase, NADH-binding subunit
Ajs_3946	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_3946: Conserved hypothetical protein	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1819: Conserved hypothetical protein	Methylibium petroleiphilum PM1 Gene: Mpe_A2579: Conserved hypothetical protein	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0051: Conserved hypothetical protein	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2848: Conserved hypothetical protein	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Conserved hypothetical protein
Ajs_3947	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_3947: Conserved hypothetical protein	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1820: Conserved hypothetical protein	Methylibium petroleiphilum PM1 Gene: Mpe_A2578: Conserved hypothetical protein	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0052: Conserved hypothetical protein	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2847: Conserved hypothetical protein	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Conserved hypothetical protein

CRON 2.
fdoX	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	* Leptothrix cholodnii SP-6 Site: position = -39 score = 5.52393 sequence = ATATGCAGGCCTTTGCATGG Gene: Lcho_3729: Putative subunit of formate dehydrogenase	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	* Polaromonas sp. JS666 Site: position = -48 score = 5.84447 sequence = GTATGCAAACCGTTGCATAC Gene: Bpro_0936: Putative subunit of formate dehydrogenase	* Rhodoferax ferrireducens DSM 15236 Site: position = -41 score = 6.12726 sequence = CTATGCAAATAGTTGCATAA Gene: Rfer_3262: Putative subunit of formate dehydrogenase	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Putative subunit of formate dehydrogenase
fdoG	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_3464: Formate dehydrogenase-O, major subunit (EC 1.2.1.2)	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3728: Formate dehydrogenase-O, major subunit (EC 1.2.1.2)	Methylibium petroleiphilum PM1 Gene: Mpe_A1170: Formate dehydrogenase-O, major subunit (EC 1.2.1.2)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0834: Formate dehydrogenase-O, major subunit (EC 1.2.1.2)	Polaromonas sp. JS666 Gene: Bpro_0937: Formate dehydrogenase-O, major subunit (EC 1.2.1.2)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3261: Formate dehydrogenase-O, major subunit (EC 1.2.1.2)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Formate dehydrogenase-O, major subunit (EC 1.2.1.2)
fdoH	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_3463: Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2)	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3727: Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2)	Methylibium petroleiphilum PM1 Gene: Mpe_A1171: Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0835: Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2)	Polaromonas sp. JS666 Gene: Bpro_0938: Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3260: Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2)
fdoY	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_3462: Putative subunit of formate dehydrogenase	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3726: Putative subunit of formate dehydrogenase	Methylibium petroleiphilum PM1 Gene: Mpe_A1172: Putative subunit of formate dehydrogenase	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0836: Putative subunit of formate dehydrogenase	Polaromonas sp. JS666 Gene: Bpro_0939: Putative subunit of formate dehydrogenase	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3259: Putative subunit of formate dehydrogenase	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Putative subunit of formate dehydrogenase
fdoI	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_3461: Formate dehydrogenase-O, gamma subunit (EC 1.2.1.2)	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3725: Formate dehydrogenase-O, gamma subunit (EC 1.2.1.2)	Methylibium petroleiphilum PM1 Gene: Mpe_A1173: Formate dehydrogenase-O, gamma subunit (EC 1.2.1.2)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0837: Formate dehydrogenase-O, gamma subunit (EC 1.2.1.2)	Polaromonas sp. JS666 Gene: Bpro_0940: Formate dehydrogenase-O, gamma subunit (EC 1.2.1.2)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3258: Formate dehydrogenase-O, gamma subunit (EC 1.2.1.2)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Formate dehydrogenase-O, gamma subunit (EC 1.2.1.2)
fdoZ	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_3460: Putative subunit of formate dehydrogenase	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3724: Putative subunit of formate dehydrogenase	Methylibium petroleiphilum PM1 Gene: Mpe_A1174: Putative subunit of formate dehydrogenase	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0838: Putative subunit of formate dehydrogenase	Polaromonas sp. JS666 Gene: Bpro_0941: Putative subunit of formate dehydrogenase	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3257: Putative subunit of formate dehydrogenase	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Putative subunit of formate dehydrogenase
fdhD	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_3459: Formate dehydrogenase chain D (EC 1.2.1.2)	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3723: Formate dehydrogenase chain D (EC 1.2.1.2)	Methylibium petroleiphilum PM1 Gene: Mpe_A1176: Formate dehydrogenase chain D (EC 1.2.1.2)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0839: Formate dehydrogenase chain D (EC 1.2.1.2)	Polaromonas sp. JS666 Gene: Bpro_0942: Formate dehydrogenase chain D (EC 1.2.1.2)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3256: Formate dehydrogenase chain D (EC 1.2.1.2)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Formate dehydrogenase chain D (EC 1.2.1.2)

CRON 3.
tupA	Acidovorax avenae subsp. citrulli AAC00-1	* Acidovorax sp. JS42 Site: position = -58 score = 5.91135 sequence = CTATGCACAAGTTTTCATAT Gene: Ajs_3129: Tungstate ABC-type transporter, permease protein	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1813: Tungstate ABC-type transporter, permease protein	* Methylibium petroleiphilum PM1 Site: position = -102 score = 5.32755 sequence = CTATGCATGCTCGTTCATAT Gene: Mpe_A2223: Tungstate ABC-type transporter, permease protein	* Polaromonas naphthalenivorans CJ2 Site: position = -84 score = 5.75948 sequence = CTATGCAAACAGCTTCATAA Gene: Pnap_1509: Tungstate ABC-type transporter, permease protein	* Polaromonas sp. JS666 Site: position = -85 score = 5.76943 sequence = CTATGCAAACCCATTCATAA Gene: Bpro_1758: Tungstate ABC-type transporter, permease protein	* Rhodoferax ferrireducens DSM 15236 Site: position = -58 score = 5.22138 sequence = CTATGCACGGTGGTTCATAT Gene: Rfer_2869: Tungstate ABC-type transporter, permease protein	* Variovorax paradoxus S110 Site: position = -74 score = 6.06821 sequence = CTATGCAAAATCCTGCATAG Gene: Vapar_1588: Tungstate ABC-type transporter, permease protein	Verminephrobacter eiseniae EF01-2	Tungstate ABC-type transporter, permease protein
tupC	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_3128: Tungstate ABC-type transporter, ATP-binding protein	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1814: Tungstate ABC-type transporter, ATP-binding protein	Methylibium petroleiphilum PM1 Gene: Mpe_A2222: Tungstate ABC-type transporter, ATP-binding protein	Polaromonas naphthalenivorans CJ2 Gene: Pnap_1510: Tungstate ABC-type transporter, ATP-binding protein	Polaromonas sp. JS666 Gene: Bpro_1759: Tungstate ABC-type transporter, ATP-binding protein	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2868: Tungstate ABC-type transporter, ATP-binding protein	Variovorax paradoxus S110 Gene: Vapar_1589: Tungstate ABC-type transporter, ATP-binding protein	Verminephrobacter eiseniae EF01-2	Tungstate ABC-type transporter, ATP-binding protein
tupB	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_3127: Tungstate ABC-type transporter, substrate-binding protein	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_1815: Tungstate ABC-type transporter, substrate-binding protein	Methylibium petroleiphilum PM1 Gene: Mpe_A2221: Tungstate ABC-type transporter, substrate-binding protein	Polaromonas naphthalenivorans CJ2 Gene: Pnap_1511: Tungstate ABC-type transporter, substrate-binding protein	Polaromonas sp. JS666 Gene: Bpro_1760: Tungstate ABC-type transporter, substrate-binding protein	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2867: Tungstate ABC-type transporter, substrate-binding protein	Variovorax paradoxus S110 Gene: Vapar_1590: Tungstate ABC-type transporter, substrate-binding protein	Verminephrobacter eiseniae EF01-2	Tungstate ABC-type transporter, substrate-binding protein
modA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1 Gene: Mpe_A2220: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog ModE3 - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --