Regulog HutC - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Histidine utilization
Effector:	cis-Urocanic acid
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 63 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - HutC
By TF family - GntR/Others
By effector - cis-Urocanic acid
By pathway - Histidine utilization

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	4	2
Shewanella putrefaciens CN-32	4	2
Shewanella sp W3-18-1	4	2
Shewanella sp ANA-3	4	2
Shewanella sp MR-4	4	2
Shewanella sp MR-7	4	2
Shewanella baltica OS155	4	2
Shewanella denitrificans OS217	4	2
Shewanella frigidimarina NCIMB 400	4	2
Shewanella amazonensis SB2B	2	2
Shewanella loihica PV-4	4	2
Shewanella pealeana ATCC 700345	4	2
Shewanella halifaxensis HAW-EB4	4	2
Shewanella piezotolerans WP3	4	2
Shewanella sediminis HAW-EB3	4	2
Shewanella woodyi ATCC 51908	4	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
hutC	* Shewanella oneidensis MR-1 Site: position = -131 score = 6.09562 sequence = TTACTTGTATATACAAGCTA Site: position = -141 score = 5.61431 sequence = TAGCTTGTATTTACTTGTAT Gene: SO0096: Histidine utilization repressor, GntR family	* Shewanella putrefaciens CN-32 Site: position = -168 score = 5.48242 sequence = TGGCTTGTATTTACTTGTAT Site: position = -158 score = 6.09562 sequence = TTACTTGTATATACAAGCTA Gene: Sputcn32_0078: Histidine utilization repressor, GntR family	* Shewanella sp W3-18-1 Site: position = -168 score = 5.48242 sequence = TGGCTTGTATTTACTTGTAT Site: position = -158 score = 6.09562 sequence = TTACTTGTATATACAAGCTA Gene: Sputw3181_3999: Histidine utilization repressor, GntR family	* Shewanella sp ANA-3 Site: position = -122 score = 6.09562 sequence = TTACTTGTATATACAAGCTA Site: position = -132 score = 5.61431 sequence = TAGCTTGTATTTACTTGTAT Gene: Shewana3_0099: Histidine utilization repressor, GntR family	* Shewanella sp MR-4 Site: position = -132 score = 5.40804 sequence = CAGCTTGTATTTACTTGTAT Site: position = -122 score = 6.09562 sequence = TTACTTGTATATACAAGCTA Gene: Shewmr4_0098: Histidine utilization repressor, GntR family	* Shewanella sp MR-7 Site: position = -132 score = 5.61431 sequence = TAGCTTGTATTTACTTGTAT Site: position = -122 score = 6.09562 sequence = TTACTTGTATATACAAGCTA Gene: Shewmr7_0093: Histidine utilization repressor, GntR family	* Shewanella baltica OS155 Site: position = -167 score = 5.61431 sequence = TAGCTTGTATTTACTTGTAT Site: position = -157 score = 6.09562 sequence = TTACTTGTATATACAAGCTA Gene: Sbal_4253: Histidine utilization repressor, GntR family	* Shewanella denitrificans OS217 Site: position = -86 score = 5.65261 sequence = TGGCTTGTATATACAAGGTA Gene: Sden_0082: Histidine utilization repressor, GntR family	* Shewanella frigidimarina NCIMB 400 Site: position = -57 score = 4.63227 sequence = ATACTTGTTTTAACTTGTAT Site: position = -47 score = 5.80362 sequence = TAACTTGTATATACAAGGTA Gene: Sfri_3954: Histidine utilization repressor, GntR family	* Shewanella amazonensis SB2B Site: position = -89 score = 6.15442 sequence = CTACTTGTATATACAAGTTT Site: position = -99 score = 3.97379 sequence = CAGCCAGTATCTACTTGTAT Gene: Sama_0081: Histidine utilization repressor, GntR family	* Shewanella loihica PV-4 Site: position = -128 score = 5.61431 sequence = TAGCTTGTATTTACTTGTAT Site: position = -118 score = 6.09562 sequence = TTACTTGTATATACAAGCTA Gene: Shew_3758: Histidine utilization repressor, GntR family	* Shewanella pealeana ATCC 700345 Site: position = -96 score = 5.27369 sequence = TAGCTTGTGTTTACTTGTAT Site: position = -86 score = 6.09562 sequence = TTACTTGTATATACAAGCTA Gene: Spea_4170: Histidine utilization repressor, GntR family	* Shewanella halifaxensis HAW-EB4 Site: position = -96 score = 5.03414 sequence = CCGCTTGTATTTACTTGTAT Site: position = -86 score = 6.09562 sequence = TTACTTGTATATACAAGCTA Gene: Shal_0072: Histidine utilization repressor, GntR family	* Shewanella piezotolerans WP3 Site: position = -167 score = 5.61431 sequence = TAGCTTGTATTTACTTGTAT Site: position = -157 score = 6.09562 sequence = TTACTTGTATATACAAGCTA Gene: swp_0132: Histidine utilization repressor, GntR family	* Shewanella sediminis HAW-EB3 Site: position = -140 score = 5.42716 sequence = CAACTTGTATTTACTTGTAT Site: position = -130 score = 6.09562 sequence = TTACTTGTATATACAAGCTA Gene: Ssed_4448: Histidine utilization repressor, GntR family	* Shewanella woodyi ATCC 51908 Site: position = -191 score = 5.42716 sequence = CAACTTGTATTTACTTGTAT Site: position = -181 score = 6.09562 sequence = TTACTTGTATATACAAGCTA Gene: Swoo_4839: Histidine utilization repressor, GntR family	Histidine utilization repressor, GntR family
hutU	Shewanella oneidensis MR-1 Gene: SO0097: Urocanate hydratase (EC 4.2.1.49)	Shewanella putrefaciens CN-32 Gene: Sputcn32_0079: Urocanate hydratase (EC 4.2.1.49)	Shewanella sp W3-18-1 Gene: Sputw3181_3998: Urocanate hydratase (EC 4.2.1.49)	Shewanella sp ANA-3 Gene: Shewana3_0100: Urocanate hydratase (EC 4.2.1.49)	Shewanella sp MR-4 Gene: Shewmr4_0099: Urocanate hydratase (EC 4.2.1.49)	Shewanella sp MR-7 Gene: Shewmr7_0094: Urocanate hydratase (EC 4.2.1.49)	Shewanella baltica OS155 Gene: Sbal_4252: Urocanate hydratase (EC 4.2.1.49)	Shewanella denitrificans OS217 Gene: Sden_0083: Urocanate hydratase (EC 4.2.1.49)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_3953: Urocanate hydratase (EC 4.2.1.49)	Shewanella amazonensis SB2B Gene: Sama_1632: Urocanate hydratase (EC 4.2.1.49)	Shewanella loihica PV-4 Gene: Shew_3757: Urocanate hydratase (EC 4.2.1.49)	Shewanella pealeana ATCC 700345 Gene: Spea_4169: Urocanate hydratase (EC 4.2.1.49)	Shewanella halifaxensis HAW-EB4 Gene: Shal_0073: Urocanate hydratase (EC 4.2.1.49)	Shewanella piezotolerans WP3 Gene: swp_0133: Urocanate hydratase (EC 4.2.1.49)	Shewanella sediminis HAW-EB3 Gene: Ssed_4447: Urocanate hydratase (EC 4.2.1.49)	* Shewanella woodyi ATCC 51908 Site: position = -110 score = 5.43359 sequence = AGTGTTGTATATACAAGTAG Gene: Swoo_4838: Urocanate hydratase (EC 4.2.1.49)	Urocanate hydratase (EC 4.2.1.49)
hutH	Shewanella oneidensis MR-1 Gene: SO0098: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella putrefaciens CN-32 Gene: Sputcn32_0080: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella sp W3-18-1 Gene: Sputw3181_3997: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella sp ANA-3 Gene: Shewana3_0101: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella sp MR-4 Gene: Shewmr4_0100: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella sp MR-7 Gene: Shewmr7_0095: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella baltica OS155 Gene: Sbal_4251: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella denitrificans OS217 Gene: Sden_0084: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_3952: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella amazonensis SB2B Gene: Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella loihica PV-4 Gene: Shew_3756: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella pealeana ATCC 700345 Gene: Spea_4168: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella halifaxensis HAW-EB4 Gene: Shal_0074: Histidine ammonia-lyase (EC 4.3.1.3)	2 Shewanella piezotolerans WP3 Gene: swp_0134: Histidine ammonia-lyase (EC 4.3.1.3) Gene: swp_0136: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella sediminis HAW-EB3 Gene: Ssed_4446: Histidine ammonia-lyase (EC 4.3.1.3)	Shewanella woodyi ATCC 51908 Gene: Swoo_4837: Histidine ammonia-lyase (EC 4.3.1.3)	Histidine ammonia-lyase (EC 4.3.1.3)

CRON 2.
hutI	* Shewanella oneidensis MR-1 Site: position = -95 score = 6.51842 sequence = TAGCTTGTATATACAAGTAA Site: position = -85 score = 4.51957 sequence = ATACAAGTAAATACAAGCTA Gene: SO0095: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella putrefaciens CN-32 Site: position = -86 score = 4.4374 sequence = ATACAAGTAAATACAAGCCA Site: position = -96 score = 6.51842 sequence = TAGCTTGTATATACAAGTAA Gene: Sputcn32_0077: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella sp W3-18-1 Site: position = -86 score = 4.4374 sequence = ATACAAGTAAATACAAGCCA Site: position = -96 score = 6.51842 sequence = TAGCTTGTATATACAAGTAA Gene: Sputw3181_4000: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella sp ANA-3 Site: position = -85 score = 4.51957 sequence = ATACAAGTAAATACAAGCTA Site: position = -95 score = 6.51842 sequence = TAGCTTGTATATACAAGTAA Gene: Shewana3_0098: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella sp MR-4 Site: position = -85 score = 4.29418 sequence = ATACAAGTAAATACAAGCTG Site: position = -95 score = 6.51842 sequence = TAGCTTGTATATACAAGTAA Gene: Shewmr4_0097: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella sp MR-7 Site: position = -95 score = 6.51842 sequence = TAGCTTGTATATACAAGTAA Site: position = -85 score = 4.51957 sequence = ATACAAGTAAATACAAGCTA Gene: Shewmr7_0092: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella baltica OS155 Site: position = -96 score = 6.51842 sequence = TAGCTTGTATATACAAGTAA Site: position = -86 score = 4.51957 sequence = ATACAAGTAAATACAAGCTA Gene: Sbal_4254: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella denitrificans OS217 Site: position = -90 score = 5.55177 sequence = TACCTTGTATATACAAGCCA Gene: Sden_0081: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella frigidimarina NCIMB 400 Site: position = -70 score = 5.89901 sequence = TACCTTGTATATACAAGTTA Site: position = -60 score = 3.9412 sequence = ATACAAGTTAAAACAAGTAT Gene: Sfri_3955: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella amazonensis SB2B Site: position = -135 score = 3.39077 sequence = ATACAAGTAGATACTGGCTG Site: position = -145 score = 6.33127 sequence = AAACTTGTATATACAAGTAG Gene: Sama_0080: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella loihica PV-4 Site: position = -85 score = 6.51842 sequence = TAGCTTGTATATACAAGTAA Site: position = -75 score = 4.51957 sequence = ATACAAGTAAATACAAGCTA Gene: Shew_3759: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella pealeana ATCC 700345 Site: position = -87 score = 3.92779 sequence = ATACAAGTAAACACAAGCTA Site: position = -97 score = 6.51842 sequence = TAGCTTGTATATACAAGTAA Gene: Spea_4171: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella halifaxensis HAW-EB4 Site: position = -99 score = 4.05217 sequence = ATACAAGTAAATACAAGCGG Site: position = -109 score = 6.51842 sequence = TAGCTTGTATATACAAGTAA Gene: Shal_0071: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella piezotolerans WP3 Site: position = -98 score = 4.51957 sequence = ATACAAGTAAATACAAGCTA Site: position = -108 score = 6.51842 sequence = TAGCTTGTATATACAAGTAA Gene: swp_0131: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella sediminis HAW-EB3 Site: position = -75 score = 4.55925 sequence = ATACAAGTAAATACAAGTTG Site: position = -85 score = 6.51842 sequence = TAGCTTGTATATACAAGTAA Gene: Ssed_4449: Imidazolonepropionase (EC 3.5.2.7)	* Shewanella woodyi ATCC 51908 Site: position = -85 score = 4.55925 sequence = ATACAAGTAAATACAAGTTG Site: position = -95 score = 6.51842 sequence = TAGCTTGTATATACAAGTAA Gene: Swoo_4840: Imidazolonepropionase (EC 3.5.2.7)	Imidazolonepropionase (EC 3.5.2.7)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog HutC - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --