Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YtrA - Clostridia-1

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Multidrug resistance; Multidrug efflux; Antibiotic resistance
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium acetobutylicum ATCC 824
Clostridium beijerincki NCIMB 8052 4 1
Clostridium botulinum A str. ATCC 3502 4 1
Clostridium butyricum 5521 4 1
Clostridium kluyveri DSM 555
Clostridium novyi NT 5 1
Clostridium perfringens ATCC 13124
Clostridium tetani E88 5 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ytrA
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1885: Transcriptional regulator, GntR family
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2790: Transcriptional regulator, GntR family
 
Clostridium butyricum 5521

Gene: CBY_1392: Transcriptional regulator, GntR family
 
Clostridium kluyveri DSM 555
*
Clostridium novyi NT

Site:
position = -121
score = 7.44738
sequence = AAGTGTACTAGTTAAATTAATACACTT

Gene: NT01CX_0244: Transcriptional regulator, GntR family
 
Clostridium perfringens ATCC 13124
*
Clostridium tetani E88

Site:
position = -55
score = 6.11799
sequence = AAGTGTACTAATAATAATAACACACAC

Gene: CTC01984: Transcriptional regulator, GntR family
Transcriptional regulator, GntR family
ytrB
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1886: ABC-type transport system, ATPase component
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2789: ABC-type transport system, ATPase component
 
Clostridium butyricum 5521

Gene: CBY_1393: ABC-type transport system, ATPase component
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT

Gene: NT01CX_0243: ABC-type transport system, ATPase component
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88

Gene: CTC01985: ABC-type transport system, ATPase component
ABC-type transport system, ATPase component
ytrC
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1887: ABC-type transport system, permease component
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2788: ABC-type transport system, permease component
 
Clostridium butyricum 5521

Gene: CBY_1394: ABC-type transport system, permease component
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT

Gene: NT01CX_0242: ABC-type transport system, permease component
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88

Gene: CTC01986: ABC-type transport system, permease component
ABC-type transport system, permease component
bcrA
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT

Gene: NT01CX_0241: ABC transporter, ATP-binding protein
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
ABC transporter, ATP-binding protein
CAC0139
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT

Gene: NT01CX_0240: Related to ABC transporter permease component
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
probable permease
yhcG
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88

Gene: CTC01987: transporter
ABC transporter, ATP-binding protein
CTC01988
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88

Gene: CTC01988: membrane spanning protein
membrane spanning protein
CBO2791
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -84
score = 6.92257
sequence = AAGTGTATTAGGTGTAGTAGTACACTT

Gene: CBO2791: Teicoplanin resistance protein
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Teicoplanin resistance protein
Cbei_1884
 
Clostridium acetobutylicum ATCC 824
*
Clostridium beijerincki NCIMB 8052

Site:
position = 74
score = 6.87837
sequence = AAGTGTACTATATGAGCTAGTACACTT

Gene: Cbei_1884: hypothetical protein
 
Clostridium botulinum A str. ATCC 3502
*
Clostridium butyricum 5521

Site:
position = -48
score = 6.71643
sequence = AGGTGTACTAGTTCAAATAGTACACCT

Gene: CBY_1391: hypothetical protein
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD