Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog MetR - Rhodobacterales

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor (activator)
Biological process: Methionine biosynthesis
Effector: Homocysteine
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 30 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1 4 3
Paracoccus denitrificans PD1222 2 2
Jannaschia sp. CCS1 1 1
Rhodobacterales bacterium HTCC2654 4 3
Oceanicola granulosus HTCC2516 2 2
Loktanella vestfoldensis SKA53 3 3
Oceanicola batsensis HTCC2597 2 2
Roseovarius nubinhibens ISM 2 2
Roseovarius sp. 217 3 3
Sulfitobacter sp. EE-36 2 2
Silicibacter TM1040 4 3
Silicibacter pomeroyi DSS-3 2 2
Roseobacter sp. MED193 2 2
Hyphomonas neptunium ATCC 15444
Oceanicaulis alexandrii HTCC2633
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bhmT
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2124: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)
 
Paracoccus denitrificans PD1222
*
Jannaschia sp. CCS1

Site:
position = -90
score = 4.23132
sequence = ATGAAAATGATGCAT

Gene: Jann_2547: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_02050: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53

Gene: SKA53_03424: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)
 
Oceanicola batsensis HTCC2597

Gene: OB2597_02517: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)
 
Roseovarius nubinhibens ISM

Gene: ISM_13465: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)
*
Roseovarius sp. 217

Site:
position = -73
score = 4.20011
sequence = ATGAAATTTATGCAT

Gene: ROS217_19582: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_1468: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)
 
Silicibacter pomeroyi DSS-3

Gene: SPO1884: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_05521: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)
Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)
 
CRON 2.
metR
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -48
score = 4.91359
sequence = GTGAGACAAATTCAT

Gene: RSP_2171: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Paracoccus denitrificans PD1222

Site:
position = -47
score = 4.91359
sequence = GTGAGACAAATTCAT

Gene: Pden_2318: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
 
Jannaschia sp. CCS1

Gene: Jann_1027: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Rhodobacterales bacterium HTCC2654

Site:
position = -47
score = 4.91359
sequence = GTGAGACAAATTCAT

Gene: RB2654_08000: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Oceanicola granulosus HTCC2516

Site:
position = -49
score = 4.91359
sequence = GTGAGACAAACTCAT

Gene: OG2516_06419: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Loktanella vestfoldensis SKA53

Site:
position = -31
score = 4.35886
sequence = TTGAGACAAATTCAT

Gene: SKA53_15331: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Oceanicola batsensis HTCC2597

Site:
position = -49
score = 4.74534
sequence = GTGAGACAAGCTCAT

Gene: OB2597_00770: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Roseovarius nubinhibens ISM

Site:
position = -48
score = 4.11297
sequence = ATTAGGCAAATTCAT

Gene: ISM_08345: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Roseovarius sp. 217

Site:
position = -48
score = 4.8087
sequence = GTGAGACAACTTCAT

Gene: ROS217_15585: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Sulfitobacter sp. EE-36

Site:
position = -47
score = 4.91359
sequence = GTGAAACAAACTCAT

Gene: EE36_03123: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Silicibacter TM1040

Site:
position = -48
score = 4.86973
sequence = GTGAATCAAATTCAT

Gene: TM1040_1699: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Silicibacter pomeroyi DSS-3

Site:
position = -48
score = 4.8087
sequence = GTGAGACAACTTCAT

Gene: SPO3015: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
*
Roseobacter sp. MED193

Site:
position = -49
score = 4.95744
sequence = GTGAAACAATTTCAT

Gene: MED193_22236: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
 
CRON 3.
metF
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -61
score = 4.91359
sequence = ATGAATTTGTCTCAC

Gene: RSP_2172: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Paracoccus denitrificans PD1222

Site:
position = -58
score = 4.91359
sequence = ATGAATTTGTCTCAC

Gene: Pden_2319: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Jannaschia sp. CCS1

Gene: Jann_1026: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Rhodobacterales bacterium HTCC2654

Site:
position = -64
score = 4.91359
sequence = ATGAATTTGTCTCAC

Gene: RB2654_08005: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Oceanicola granulosus HTCC2516

Site:
position = -60
score = 4.91359
sequence = ATGAGTTTGTCTCAC

Gene: OG2516_06424: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Loktanella vestfoldensis SKA53

Site:
position = -60
score = 4.35886
sequence = ATGAATTTGTCTCAA

Gene: SKA53_15326: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Oceanicola batsensis HTCC2597

Site:
position = -57
score = 4.74534
sequence = ATGAGCTTGTCTCAC

Gene: OB2597_00765: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Roseovarius nubinhibens ISM

Site:
position = -66
score = 4.11297
sequence = ATGAATTTGCCTAAT

Gene: ISM_08350: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Roseovarius sp. 217

Site:
position = -74
score = 4.8087
sequence = ATGAAGTTGTCTCAC

Gene: ROS217_15580: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Sulfitobacter sp. EE-36

Site:
position = -64
score = 4.91359
sequence = ATGAGTTTGTTTCAC

Gene: EE36_03128: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Silicibacter TM1040

Site:
position = -124
score = 4.86973
sequence = ATGAATTTGATTCAC

Gene: TM1040_1700: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Silicibacter pomeroyi DSS-3

Site:
position = -16
score = 4.8087
sequence = ATGAAGTTGTCTCAC

Gene: SPO3016: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
*
Roseobacter sp. MED193

Site:
position = -62
score = 4.95744
sequence = ATGAAATTGTTTCAC

Gene: MED193_22231: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2103: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_05526: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
CRON 4.
metH2
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -44
score = 4.63714
sequence = ATGAAACACCTTCAT

Gene: RSP_3347: Methionine synthase I (cobalamin-dependent), methyltransferase domain
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
*
Rhodobacterales bacterium HTCC2654

Site:
position = -89
score = 4.8281
sequence = ATGAGCCAGTCTCAT

Gene: RB2654_20213: Methionine synthase I (cobalamin-dependent), methyltransferase domain
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
*
Silicibacter TM1040

Site:
position = -91
score = 4.5966
sequence = GTGAGGCAAGCTCAT

Gene: TM1040_3617: Methionine synthase I (cobalamin-dependent), methyltransferase domain
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2102: Methionine synthase I (cobalamin-dependent), methyltransferase domain
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_05521: Methionine synthase I (cobalamin-dependent), methyltransferase domain
Methionine synthase I (cobalamin-dependent), methyltransferase domain
metH
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_3346: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Paracoccus denitrificans PD1222

Gene: Pden_1935: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_20218: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Oceanicola granulosus HTCC2516
*
Loktanella vestfoldensis SKA53

Site:
position = -111
score = 4.69048
sequence = GTGAATGAGTTTCAT

Gene: SKA53_15401: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_3618: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2100: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_05516: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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