Regulog MetR - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | repressor (activator) |
| Biological process: | Methionine biosynthesis |
| Effector: | Homocysteine |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By trascription factor - MetR
- By TF family - LysR
- By effector - Homocysteine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 4 | 3 |
| Paracoccus denitrificans PD1222 | 2 | 2 |
| Jannaschia sp. CCS1 | 1 | 1 |
| Rhodobacterales bacterium HTCC2654 | 4 | 3 |
| Oceanicola granulosus HTCC2516 | 2 | 2 |
| Loktanella vestfoldensis SKA53 | 3 | 3 |
| Oceanicola batsensis HTCC2597 | 2 | 2 |
| Roseovarius nubinhibens ISM | 2 | 2 |
| Roseovarius sp. 217 | 3 | 3 |
| Sulfitobacter sp. EE-36 | 2 | 2 |
| Silicibacter TM1040 | 4 | 3 |
| Silicibacter pomeroyi DSS-3 | 2 | 2 |
| Roseobacter sp. MED193 | 2 | 2 |
| Hyphomonas neptunium ATCC 15444 | ||
| Oceanicaulis alexandrii HTCC2633 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| bhmT |
Gene: RSP_2124: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) |
|
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Jannaschia sp. CCS1 Site: position = -90 score = 4.23132 sequence = ATGAAAATGATGCAT Gene: Jann_2547: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) |
Gene: RB2654_02050: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) |
|
Gene: SKA53_03424: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) |
Gene: OB2597_02517: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) |
Gene: ISM_13465: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) |
*
Roseovarius sp. 217 Site: position = -73 score = 4.20011 sequence = ATGAAATTTATGCAT Gene: ROS217_19582: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) |
|
Gene: TM1040_1468: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) |
Gene: SPO1884: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) |
|
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Gene: OA2633_05521: Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) |
Betaine--homocysteine S-methyltransferase (EC 2.1.1.5) |
| CRON 2. | ||||||||||||||||
| metR |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -48 score = 4.91359 sequence = GTGAGACAAATTCAT Gene: RSP_2171: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Paracoccus denitrificans PD1222 Site: position = -47 score = 4.91359 sequence = GTGAGACAAATTCAT Gene: Pden_2318: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
Gene: Jann_1027: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Rhodobacterales bacterium HTCC2654 Site: position = -47 score = 4.91359 sequence = GTGAGACAAATTCAT Gene: RB2654_08000: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Oceanicola granulosus HTCC2516 Site: position = -49 score = 4.91359 sequence = GTGAGACAAACTCAT Gene: OG2516_06419: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Loktanella vestfoldensis SKA53 Site: position = -31 score = 4.35886 sequence = TTGAGACAAATTCAT Gene: SKA53_15331: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Oceanicola batsensis HTCC2597 Site: position = -49 score = 4.74534 sequence = GTGAGACAAGCTCAT Gene: OB2597_00770: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Roseovarius nubinhibens ISM Site: position = -48 score = 4.11297 sequence = ATTAGGCAAATTCAT Gene: ISM_08345: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Roseovarius sp. 217 Site: position = -48 score = 4.8087 sequence = GTGAGACAACTTCAT Gene: ROS217_15585: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Sulfitobacter sp. EE-36 Site: position = -47 score = 4.91359 sequence = GTGAAACAAACTCAT Gene: EE36_03123: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Silicibacter TM1040 Site: position = -48 score = 4.86973 sequence = GTGAATCAAATTCAT Gene: TM1040_1699: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Silicibacter pomeroyi DSS-3 Site: position = -48 score = 4.8087 sequence = GTGAGACAACTTCAT Gene: SPO3015: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Roseobacter sp. MED193 Site: position = -49 score = 4.95744 sequence = GTGAAACAATTTCAT Gene: MED193_22236: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
| CRON 3. | ||||||||||||||||
| metF |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -61 score = 4.91359 sequence = ATGAATTTGTCTCAC Gene: RSP_2172: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Paracoccus denitrificans PD1222 Site: position = -58 score = 4.91359 sequence = ATGAATTTGTCTCAC Gene: Pden_2319: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Jann_1026: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Rhodobacterales bacterium HTCC2654 Site: position = -64 score = 4.91359 sequence = ATGAATTTGTCTCAC Gene: RB2654_08005: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Oceanicola granulosus HTCC2516 Site: position = -60 score = 4.91359 sequence = ATGAGTTTGTCTCAC Gene: OG2516_06424: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Loktanella vestfoldensis SKA53 Site: position = -60 score = 4.35886 sequence = ATGAATTTGTCTCAA Gene: SKA53_15326: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Oceanicola batsensis HTCC2597 Site: position = -57 score = 4.74534 sequence = ATGAGCTTGTCTCAC Gene: OB2597_00765: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Roseovarius nubinhibens ISM Site: position = -66 score = 4.11297 sequence = ATGAATTTGCCTAAT Gene: ISM_08350: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Roseovarius sp. 217 Site: position = -74 score = 4.8087 sequence = ATGAAGTTGTCTCAC Gene: ROS217_15580: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Sulfitobacter sp. EE-36 Site: position = -64 score = 4.91359 sequence = ATGAGTTTGTTTCAC Gene: EE36_03128: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Silicibacter TM1040 Site: position = -124 score = 4.86973 sequence = ATGAATTTGATTCAC Gene: TM1040_1700: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Silicibacter pomeroyi DSS-3 Site: position = -16 score = 4.8087 sequence = ATGAAGTTGTCTCAC Gene: SPO3016: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Roseobacter sp. MED193 Site: position = -62 score = 4.95744 sequence = ATGAAATTGTTTCAC Gene: MED193_22231: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: HNE_2103: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: OA2633_05526: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
| CRON 4. | ||||||||||||||||
| metH2 |
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Rhodobacter sphaeroides 2.4.1 Site: position = -44 score = 4.63714 sequence = ATGAAACACCTTCAT Gene: RSP_3347: Methionine synthase I (cobalamin-dependent), methyltransferase domain |
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Rhodobacterales bacterium HTCC2654 Site: position = -89 score = 4.8281 sequence = ATGAGCCAGTCTCAT Gene: RB2654_20213: Methionine synthase I (cobalamin-dependent), methyltransferase domain |
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Silicibacter TM1040 Site: position = -91 score = 4.5966 sequence = GTGAGGCAAGCTCAT Gene: TM1040_3617: Methionine synthase I (cobalamin-dependent), methyltransferase domain |
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Gene: HNE_2102: Methionine synthase I (cobalamin-dependent), methyltransferase domain |
Gene: OA2633_05521: Methionine synthase I (cobalamin-dependent), methyltransferase domain |
Methionine synthase I (cobalamin-dependent), methyltransferase domain |
| metH |
Gene: RSP_3346: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Pden_1935: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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Gene: RB2654_20218: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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*
Loktanella vestfoldensis SKA53 Site: position = -111 score = 4.69048 sequence = GTGAATGAGTTTCAT Gene: SKA53_15401: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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Gene: TM1040_3618: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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Gene: HNE_2100: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: OA2633_05516: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |