Regulog BetI - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Osmotic stress response
Effector:	Betaine
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - TetR
By effector - Betaine
By pathway - Osmotic stress response

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1
Shewanella putrefaciens CN-32
Shewanella sp W3-18-1
Shewanella sp ANA-3
Shewanella sp MR-4
Shewanella sp MR-7
Shewanella baltica OS155	5	1
Shewanella denitrificans OS217	4	1
Shewanella frigidimarina NCIMB 400	5	1
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella pealeana ATCC 700345	5	1
Shewanella halifaxensis HAW-EB4	5	1
Shewanella piezotolerans WP3
Shewanella sediminis HAW-EB3	6	2
Shewanella woodyi ATCC 51908	5	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
betT2	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1945: Predicted choline transporter BetT-II, BCCT family	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	* Shewanella sediminis HAW-EB3 Site: position = -360 score = 6.99699 sequence = TTAATTGATCGTTCAATTAA Gene: Ssed_1773: Predicted choline transporter BetT-II, BCCT family	Shewanella woodyi ATCC 51908	Predicted choline transporter BetT-II, BCCT family

CRON 2.
betI	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	* Shewanella baltica OS155 Site: position = -63 score = 6.98037 sequence = TGGATTGAACGTTCAATTAA Gene: Sbal_1323: glycine betaine biosynthesis transcriptional regulator, TetR family	* Shewanella denitrificans OS217 Site: position = -46 score = 7.50991 sequence = TTAATTGAACGTTCAATTAA Gene: Sden_0713: glycine betaine biosynthesis transcriptional regulator, TetR family	* Shewanella frigidimarina NCIMB 400 Site: position = -51 score = 7.19124 sequence = TTAATTGAGCGTTCAATTAA Gene: Sfri_1948: glycine betaine biosynthesis transcriptional regulator, TetR family	Shewanella amazonensis SB2B	Shewanella loihica PV-4	* Shewanella pealeana ATCC 700345 Site: position = -97 score = 7.29903 sequence = TTAATTGAACGTTCAATCAA Gene: Spea_1009: glycine betaine biosynthesis transcriptional regulator, TetR family	* Shewanella halifaxensis HAW-EB4 Site: position = -96 score = 7.29903 sequence = TTAATTGAACGTTCAATCAA Gene: Shal_1059: glycine betaine biosynthesis transcriptional regulator, TetR family	Shewanella piezotolerans WP3	* Shewanella sediminis HAW-EB3 Site: position = -73 score = 7.50991 sequence = TTAATTGAACGTTCAATTAA Gene: Ssed_1121: glycine betaine biosynthesis transcriptional regulator, TetR family	* Shewanella woodyi ATCC 51908 Site: position = -83 score = 7.50991 sequence = TTAATTGAACGTTCAATTAA Gene: Swoo_1198: glycine betaine biosynthesis transcriptional regulator, TetR family	glycine betaine biosynthesis transcriptional regulator, TetR family
betB	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155 Gene: Sbal_1324: Betaine aldehyde dehydrogenase (EC 1.2.1.8)	Shewanella denitrificans OS217 Gene: Sden_0714: Betaine aldehyde dehydrogenase (EC 1.2.1.8)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1947: Betaine aldehyde dehydrogenase (EC 1.2.1.8)	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345 Gene: Spea_1008: Betaine aldehyde dehydrogenase (EC 1.2.1.8)	Shewanella halifaxensis HAW-EB4 Gene: Shal_1058: Betaine aldehyde dehydrogenase (EC 1.2.1.8)	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_1120: Betaine aldehyde dehydrogenase (EC 1.2.1.8)	Shewanella woodyi ATCC 51908 Gene: Swoo_1197: Betaine aldehyde dehydrogenase (EC 1.2.1.8)	Betaine aldehyde dehydrogenase (EC 1.2.1.8)
betA	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155 Gene: Sbal_1325: Choline dehydrogenase (EC 1.1.99.1)	Shewanella denitrificans OS217 Gene: Sden_0715: Choline dehydrogenase (EC 1.1.99.1)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1946: Choline dehydrogenase (EC 1.1.99.1)	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345 Gene: Spea_1007: Choline dehydrogenase (EC 1.1.99.1)	Shewanella halifaxensis HAW-EB4 Gene: Shal_1057: Choline dehydrogenase (EC 1.1.99.1)	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_1119: Choline dehydrogenase (EC 1.1.99.1)	Shewanella woodyi ATCC 51908 Gene: Swoo_1196: Choline dehydrogenase (EC 1.1.99.1)	Choline dehydrogenase (EC 1.1.99.1)
betT	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155 Gene: Sbal_1326: Predicted choline transporter BetT, BCCT family	Shewanella denitrificans OS217 Gene: Sden_0716: Predicted choline transporter BetT, BCCT family	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1945: Predicted choline transporter BetT, BCCT family	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345 Gene: Spea_1006: Predicted choline transporter BetT, BCCT family	Shewanella halifaxensis HAW-EB4 Gene: Shal_1056: Predicted choline transporter BetT, BCCT family	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_1118: Predicted choline transporter BetT, BCCT family	Shewanella woodyi ATCC 51908 Gene: Swoo_1195: Predicted choline transporter BetT, BCCT family	Predicted choline transporter BetT, BCCT family
Sbal_1327	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155 Gene: Sbal_1327: Conserved hypothetical protein 2001	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1944: Conserved hypothetical protein 2001	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345 Gene: Spea_1005: Conserved hypothetical protein 2001	Shewanella halifaxensis HAW-EB4 Gene: Shal_1055: Conserved hypothetical protein 2001	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_1117: Conserved hypothetical protein 2001	Shewanella woodyi ATCC 51908 Gene: Swoo_1194: Conserved hypothetical protein 2001	Conserved hypothetical protein 2001

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BetI - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --