Regulog AraR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Arabinose utilization |
| Effector: | Arabinose |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - GntR/Others
- By effector - Arabinose
- By pathway - Arabinose utilization
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | ||
| Shewanella putrefaciens CN-32 | 16 | 5 |
| Shewanella sp W3-18-1 | 16 | 5 |
| Shewanella sp ANA-3 | 18 | 5 |
| Shewanella sp MR-4 | 18 | 5 |
| Shewanella sp MR-7 | 18 | 5 |
| Shewanella baltica OS155 | ||
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | ||
| Shewanella amazonensis SB2B | ||
| Shewanella loihica PV-4 | ||
| Shewanella pealeana ATCC 700345 | ||
| Shewanella halifaxensis HAW-EB4 | ||
| Shewanella piezotolerans WP3 | ||
| Shewanella sediminis HAW-EB3 | ||
| Shewanella woodyi ATCC 51908 |
| Genes | Function | ||||||||||||||||
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| CRON 1. | |||||||||||||||||
| omp(Ara) |
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Shewanella putrefaciens CN-32 Site: position = -503 score = 5.44003 sequence = ATGTAATACAATACTACTG Gene: Sputcn32_2048: Arabinose-regulated TonB-dependent outer membrane receptor |
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Shewanella sp W3-18-1 Site: position = -504 score = 5.44003 sequence = ATGTAATACAATACTACTG Gene: Sputw3181_1964: Arabinose-regulated TonB-dependent outer membrane receptor |
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Shewanella sp ANA-3 Site: position = -520 score = 5.76895 sequence = AAGTAATACAATACTACTG Gene: Shewana3_2085: Arabinose-regulated TonB-dependent outer membrane receptor |
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Shewanella sp MR-4 Site: position = -521 score = 5.76895 sequence = AAGTAATACAATACTACTG Gene: Shewmr4_1998: Arabinose-regulated TonB-dependent outer membrane receptor |
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Shewanella sp MR-7 Site: position = -521 score = 5.76895 sequence = AAGTAATACAATACTACTG Gene: Shewmr7_1977: Arabinose-regulated TonB-dependent outer membrane receptor |
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Arabinose-regulated TonB-dependent outer membrane receptor |
| CRON 2. | |||||||||||||||||
| abnA |
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Shewanella putrefaciens CN-32 Site: position = -88 score = 5.44003 sequence = CAGTAGTATTGTATTACAT Gene: Sputcn32_2047: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
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Shewanella sp W3-18-1 Site: position = -88 score = 5.44003 sequence = CAGTAGTATTGTATTACAT Gene: Sputw3181_1965: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
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Shewanella sp ANA-3 Site: position = -85 score = 5.76895 sequence = CAGTAGTATTGTATTACTT Gene: Shewana3_2086: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
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Shewanella sp MR-4 Site: position = -85 score = 5.76895 sequence = CAGTAGTATTGTATTACTT Gene: Shewmr4_1999: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
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Shewanella sp MR-7 Site: position = -85 score = 5.76895 sequence = CAGTAGTATTGTATTACTT Gene: Shewmr7_1976: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
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Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) |
| Shewana3_2087 |
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Gene: Shewana3_2087: membrane protein, putative |
Gene: Shewmr4_2000: membrane protein, putative |
Gene: Shewmr7_1975: membrane protein, putative |
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membrane protein, putative |
| araL |
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Gene: Sputcn32_2046: L-arabinolactonase (EC 3.1.1.15) |
Gene: Sputw3181_1966: L-arabinolactonase (EC 3.1.1.15) |
Gene: Shewana3_2088: L-arabinolactonase (EC 3.1.1.15) |
Gene: Shewmr4_2001: L-arabinolactonase (EC 3.1.1.15) |
Gene: Shewmr7_1974: L-arabinolactonase (EC 3.1.1.15) |
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L-arabinolactonase (EC 3.1.1.15) |
| CRON 3. | |||||||||||||||||
| arb43 |
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Shewanella putrefaciens CN-32 Site: position = -45 score = 6.13414 sequence = TGGTATTACTATAATACTA Gene: Sputcn32_2063: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase |
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Shewanella sp W3-18-1 Site: position = -45 score = 6.13414 sequence = TGGTATTACTATAATACTA Gene: Sputw3181_1949: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase |
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Shewanella sp ANA-3 Site: position = -45 score = 5.99281 sequence = TGGTATTACTATAATACCA Gene: Shewana3_2069: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase |
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Shewanella sp MR-4 Site: position = -45 score = 5.99281 sequence = TGGTATTACTATAATACCA Gene: Shewmr4_1982: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase |
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Shewanella sp MR-7 Site: position = -45 score = 5.99281 sequence = TGGTATTACTATAATACCA Gene: Shewmr7_1992: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase |
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Hypothetical glycoside hydrolase, family 43, similar to arabinosidase |
| CRON 4. | |||||||||||||||||
| araC |
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Shewanella putrefaciens CN-32 Site: position = -178 score = 6.13414 sequence = TAGTATTATAGTAATACCA Gene: Sputcn32_2062: L-arabonate dehydratase (EC 4.2.1.25) |
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Shewanella sp W3-18-1 Site: position = -178 score = 6.13414 sequence = TAGTATTATAGTAATACCA Gene: Sputw3181_1950: L-arabonate dehydratase (EC 4.2.1.25) |
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Shewanella sp ANA-3 Site: position = -123 score = 5.99281 sequence = TGGTATTATAGTAATACCA Gene: Shewana3_2070: L-arabonate dehydratase (EC 4.2.1.25) |
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Shewanella sp MR-4 Site: position = -150 score = 5.99281 sequence = TGGTATTATAGTAATACCA Gene: Shewmr4_1983: L-arabonate dehydratase (EC 4.2.1.25) |
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Shewanella sp MR-7 Site: position = -150 score = 5.99281 sequence = TGGTATTATAGTAATACCA Gene: Shewmr7_1991: L-arabonate dehydratase (EC 4.2.1.25) |
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L-arabonate dehydratase (EC 4.2.1.25) |
| araY |
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Gene: Sputcn32_2061: predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46) |
Gene: Sputw3181_1951: predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46) |
Gene: Shewana3_2071: predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46) |
Gene: Shewmr4_1984: predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46) |
Gene: Shewmr7_1990: predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46) |
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predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46) |
| araM |
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Gene: Sputcn32_2060: L-arabinose-specific 1-epimerase (mutarotase) |
Gene: Sputw3181_1952: L-arabinose-specific 1-epimerase (mutarotase) |
Gene: Shewana3_2072: L-arabinose-specific 1-epimerase (mutarotase) |
Gene: Shewmr4_1985: L-arabinose-specific 1-epimerase (mutarotase) |
Gene: Shewmr7_1989: L-arabinose-specific 1-epimerase (mutarotase) |
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L-arabinose-specific 1-epimerase (mutarotase) |
| araU |
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Gene: Sputcn32_2059: Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein |
Gene: Sputw3181_1953: Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein |
Gene: Shewana3_2073: Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein |
Gene: Shewmr4_1986: Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein |
Gene: Shewmr7_1988: Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein |
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Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein |
| araV |
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Gene: Sputcn32_2058: Predicted L-arabinose ABC transport system, ATP-binding protein |
Gene: Sputw3181_1954: Predicted L-arabinose ABC transport system, ATP-binding protein |
Gene: Shewana3_2074: Predicted L-arabinose ABC transport system, ATP-binding protein |
Gene: Shewmr4_1987: Predicted L-arabinose ABC transport system, ATP-binding protein |
Gene: Shewmr7_1987: Predicted L-arabinose ABC transport system, ATP-binding protein |
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Predicted L-arabinose ABC transport system, ATP-binding protein |
| araW |
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Gene: Sputcn32_2057: Predicted L-arabinose ABC transport system, permease protein 1 |
Gene: Sputw3181_1955: Predicted L-arabinose ABC transport system, permease protein 1 |
Gene: Shewana3_2075: Predicted L-arabinose ABC transport system, permease protein 1 |
Gene: Shewmr4_1988: Predicted L-arabinose ABC transport system, permease protein 1 |
Gene: Shewmr7_1986: Predicted L-arabinose ABC transport system, permease protein 1 |
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Predicted L-arabinose ABC transport system, permease protein 1 |
| araZ |
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Gene: Sputcn32_2056: Predicted L-arabinose ABC transport system, permease protein 2 |
Gene: Sputw3181_1956: Predicted L-arabinose ABC transport system, permease protein 2 |
Gene: Shewana3_2076: Predicted L-arabinose ABC transport system, permease protein 2 |
Gene: Shewmr4_1989: Predicted L-arabinose ABC transport system, permease protein 2 |
Gene: Shewmr7_1985: Predicted L-arabinose ABC transport system, permease protein 2 |
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Predicted L-arabinose ABC transport system, permease protein 2 |
| abfA1 |
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Gene: Sputcn32_2055: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic |
Gene: Sputw3181_1957: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic |
Gene: Shewana3_2077: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic |
Gene: Shewmr4_1990: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic |
Gene: Shewmr7_1984: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic |
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Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic |
| abfA2 |
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Gene: Shewana3_2078: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), cytoplasmic |
Gene: Shewmr4_1991: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), cytoplasmic |
Gene: Shewmr7_1983: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), cytoplasmic |
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Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), cytoplasmic |
| CRON 5. | |||||||||||||||||
| araB |
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Shewanella putrefaciens CN-32 Site: position = -80 score = 6.12001 sequence = TAGTAGTATTGTAGTACTA Site: position = -107 score = 5.29426 sequence = AAATAATATTGTAATACCA Gene: Sputcn32_2068: Ribulokinase (EC 2.7.1.16) |
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Shewanella sp W3-18-1 Site: position = -80 score = 6.12001 sequence = TAGTAGTATTGTAGTACTA Site: position = -107 score = 5.29426 sequence = AAATAATATTGTAATACCA Gene: Sputw3181_1944: Ribulokinase (EC 2.7.1.16) |
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Shewanella sp ANA-3 Site: position = -81 score = 6.13981 sequence = TAGTAATATTGTAGTACTA Site: position = -108 score = 4.80544 sequence = AAATCATATTGTATTACTA Gene: Shewana3_2064: Ribulokinase (EC 2.7.1.16) |
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Shewanella sp MR-4 Site: position = -81 score = 6.13981 sequence = TAGTAATATTGTAGTACTA Site: position = -108 score = 4.80544 sequence = AAATCATATTGTATTACTA Gene: Shewmr4_1977: Ribulokinase (EC 2.7.1.16) |
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Shewanella sp MR-7 Site: position = -81 score = 6.13981 sequence = TAGTAATATTGTAGTACTA Site: position = -108 score = 4.80544 sequence = AAATCATATTGTATTACTA Gene: Shewmr7_1997: Ribulokinase (EC 2.7.1.16) |
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Ribulokinase (EC 2.7.1.16) |
| araD |
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Gene: Sputcn32_2067: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: Sputw3181_1945: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: Shewana3_2065: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: Shewmr4_1978: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: Shewmr7_1996: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
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L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
| araA |
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Gene: Sputcn32_2066: L-arabinose isomerase (EC 5.3.1.4) |
Gene: Sputw3181_1946: L-arabinose isomerase (EC 5.3.1.4) |
Gene: Shewana3_2066: L-arabinose isomerase (EC 5.3.1.4) |
Gene: Shewmr4_1979: L-arabinose isomerase (EC 5.3.1.4) |
Gene: Shewmr7_1995: L-arabinose isomerase (EC 5.3.1.4) |
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L-arabinose isomerase (EC 5.3.1.4) |
| araX |
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Gene: Sputcn32_2065: Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster |
Gene: Sputw3181_1947: Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster |
Gene: Shewana3_2067: Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster |
Gene: Shewmr4_1980: Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster |
Gene: Shewmr7_1994: Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster |
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Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |