Regulon of AraR in Shewanella sp W3-18-1
| Regulator type: | Transcription factor |
| TF locus tag: | Sputw3181_1948 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Arabinose utilization |
| Effector: | Arabinose |
| Regulog: | AraR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 16 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - GntR/Others
- By effector - Arabinose
- By pathway - Arabinose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -504
Score: 5.4 Sequence: ATGTAATACAATACTACTG
Locus tag: Sputw3181_1964
Name: omp(Ara) Funciton: Arabinose-regulated TonB-dependent outer membrane receptor |
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omp(Ara)
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Arabinose-regulated TonB-dependent outer membrane receptor
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Position: -88
Score: 5.4 Sequence: CAGTAGTATTGTATTACAT
Locus tag: Sputw3181_1965
Name: abnA Funciton: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Locus tag: Sputw3181_1966
Name: araL Funciton: L-arabinolactonase (EC 3.1.1.15) |
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abnA
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Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
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araL
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L-arabinolactonase (EC 3.1.1.15)
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Position: -45
Score: 6.1 Sequence: TGGTATTACTATAATACTA
Locus tag: Sputw3181_1949
Name: arb43 Funciton: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase |
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arb43
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Hypothetical glycoside hydrolase, family 43, similar to arabinosidase
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Position: -178
Score: 6.1 Sequence: TAGTATTATAGTAATACCA
Locus tag: Sputw3181_1950
Name: araC Funciton: L-arabonate dehydratase (EC 4.2.1.25)
Locus tag: Sputw3181_1951
Name: araY Funciton: predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46)
Locus tag: Sputw3181_1952
Name: araM Funciton: L-arabinose-specific 1-epimerase (mutarotase)
Locus tag: Sputw3181_1953
Name: araU Funciton: Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein
Locus tag: Sputw3181_1954
Name: araV Funciton: Predicted L-arabinose ABC transport system, ATP-binding protein
Locus tag: Sputw3181_1955
Name: araW Funciton: Predicted L-arabinose ABC transport system, permease protein 1
Locus tag: Sputw3181_1956
Name: araZ Funciton: Predicted L-arabinose ABC transport system, permease protein 2
Locus tag: Sputw3181_1957
Name: abfA1 Funciton: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic |
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araC
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L-arabonate dehydratase (EC 4.2.1.25)
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araY
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predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46)
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araM
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L-arabinose-specific 1-epimerase (mutarotase)
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araU
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Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein
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araV
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Predicted L-arabinose ABC transport system, ATP-binding protein
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araW
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Predicted L-arabinose ABC transport system, permease protein 1
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araZ
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Predicted L-arabinose ABC transport system, permease protein 2
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abfA1
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Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic
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Position: -107
Score: 5.3 Sequence: AAATAATATTGTAATACCA
Position: -80
Score: 6.1 Sequence: TAGTAGTATTGTAGTACTA
Locus tag: Sputw3181_1944
Name: araB Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: Sputw3181_1945
Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: Sputw3181_1946
Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4)
Locus tag: Sputw3181_1947
Name: araX Funciton: Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster |
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araB
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Ribulokinase (EC 2.7.1.16)
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araD
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L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
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araA
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L-arabinose isomerase (EC 5.3.1.4)
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araX
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Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |