Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of AraR in Shewanella putrefaciens CN-32

Properties
Regulator type: Transcription factor
TF locus tag: Sputcn32_2064
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Arabinose utilization
Effector: Arabinose
Regulog: AraR - Shewanellaceae
Statistics of regulated genes:
- Genes 16
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 30 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -503
Score: 5.4
Sequence: ATGTAATACAATACTACTG
Locus tag: Sputcn32_2048
Name: omp(Ara)
Funciton: Arabinose-regulated TonB-dependent outer membrane receptor
Sputcn32_2048
omp(Ara)
Arabinose-regulated TonB-dependent outer membrane receptor
Position: -88
Score: 5.4
Sequence: CAGTAGTATTGTATTACAT
Locus tag: Sputcn32_2047
Name: abnA
Funciton: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Locus tag: Sputcn32_2046
Name: araL
Funciton: L-arabinolactonase (EC 3.1.1.15)
Sputcn32_2047
abnA
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Sputcn32_2046
araL
L-arabinolactonase (EC 3.1.1.15)
Position: -45
Score: 6.1
Sequence: TGGTATTACTATAATACTA
Locus tag: Sputcn32_2063
Name: arb43
Funciton: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase
Sputcn32_2063
arb43
Hypothetical glycoside hydrolase, family 43, similar to arabinosidase
Position: -178
Score: 6.1
Sequence: TAGTATTATAGTAATACCA
Locus tag: Sputcn32_2062
Name: araC
Funciton: L-arabonate dehydratase (EC 4.2.1.25)
Locus tag: Sputcn32_2061
Name: araY
Funciton: predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46)
Locus tag: Sputcn32_2060
Name: araM
Funciton: L-arabinose-specific 1-epimerase (mutarotase)
Locus tag: Sputcn32_2059
Name: araU
Funciton: Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein
Locus tag: Sputcn32_2058
Name: araV
Funciton: Predicted L-arabinose ABC transport system, ATP-binding protein
Locus tag: Sputcn32_2057
Name: araW
Funciton: Predicted L-arabinose ABC transport system, permease protein 1
Locus tag: Sputcn32_2056
Name: araZ
Funciton: Predicted L-arabinose ABC transport system, permease protein 2
Locus tag: Sputcn32_2055
Name: abfA1
Funciton: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic
Sputcn32_2062
araC
L-arabonate dehydratase (EC 4.2.1.25)
Sputcn32_2061
araY
predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46)
Sputcn32_2060
araM
L-arabinose-specific 1-epimerase (mutarotase)
Sputcn32_2059
araU
Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein
Sputcn32_2058
araV
Predicted L-arabinose ABC transport system, ATP-binding protein
Sputcn32_2057
araW
Predicted L-arabinose ABC transport system, permease protein 1
Sputcn32_2056
araZ
Predicted L-arabinose ABC transport system, permease protein 2
Sputcn32_2055
abfA1
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic
Position: -107
Score: 5.3
Sequence: AAATAATATTGTAATACCA
Position: -80
Score: 6.1
Sequence: TAGTAGTATTGTAGTACTA
Locus tag: Sputcn32_2068
Name: araB
Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: Sputcn32_2067
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: Sputcn32_2066
Name: araA
Funciton: L-arabinose isomerase (EC 5.3.1.4)
Locus tag: Sputcn32_2065
Name: araX
Funciton: Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster
Sputcn32_2068
araB
Ribulokinase (EC 2.7.1.16)
Sputcn32_2067
araD
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Sputcn32_2066
araA
L-arabinose isomerase (EC 5.3.1.4)
Sputcn32_2065
araX
Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster
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