Regulon of AraR in Shewanella sp ANA-3

Properties
Regulator type:	Transcription factor
TF locus tag:	Shewana3_2068
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Arabinose utilization
Effector:	Arabinose
Regulog:	AraR - Shewanellaceae
Statistics of regulated genes:
- Genes	18
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 30 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - GntR/Others
By effector - Arabinose
By pathway - Arabinose utilization

Regulated operons
	Locus Tag	Name	Function
Position: -520 Score: 5.8 Sequence: AAGTAATACAATACTACTG Locus tag: Shewana3_2085 Name: omp(Ara) Funciton: Arabinose-regulated TonB-dependent outer membrane receptor
	Shewana3_2085	omp(Ara)	Arabinose-regulated TonB-dependent outer membrane receptor
Position: -85 Score: 5.8 Sequence: CAGTAGTATTGTATTACTT Locus tag: Shewana3_2086 Name: abnA Funciton: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) Locus tag: Shewana3_2087 Name: Shewana3_2087 Funciton: membrane protein, putative Locus tag: Shewana3_2088 Name: araL Funciton: L-arabinolactonase (EC 3.1.1.15)
	Shewana3_2086	abnA	Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
	Shewana3_2087	Shewana3_2087	membrane protein, putative
	Shewana3_2088	araL	L-arabinolactonase (EC 3.1.1.15)
Position: -45 Score: 6 Sequence: TGGTATTACTATAATACCA Locus tag: Shewana3_2069 Name: arb43 Funciton: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase
	Shewana3_2069	arb43	Hypothetical glycoside hydrolase, family 43, similar to arabinosidase
Position: -108 Score: 4.8 Sequence: AAATCATATTGTATTACTA Position: -81 Score: 6.1 Sequence: TAGTAATATTGTAGTACTA Locus tag: Shewana3_2064 Name: araB Funciton: Ribulokinase (EC 2.7.1.16) Locus tag: Shewana3_2065 Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) Locus tag: Shewana3_2066 Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4) Locus tag: Shewana3_2067 Name: araX Funciton: Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster
	Shewana3_2064	araB	Ribulokinase (EC 2.7.1.16)
	Shewana3_2065	araD	L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
	Shewana3_2066	araA	L-arabinose isomerase (EC 5.3.1.4)
	Shewana3_2067	araX	Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster
Position: -123 Score: 6 Sequence: TGGTATTATAGTAATACCA Locus tag: Shewana3_2070 Name: araC Funciton: L-arabonate dehydratase (EC 4.2.1.25) Locus tag: Shewana3_2071 Name: araY Funciton: predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46) Locus tag: Shewana3_2072 Name: araM Funciton: L-arabinose-specific 1-epimerase (mutarotase) Locus tag: Shewana3_2073 Name: araU Funciton: Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein Locus tag: Shewana3_2074 Name: araV Funciton: Predicted L-arabinose ABC transport system, ATP-binding protein Locus tag: Shewana3_2075 Name: araW Funciton: Predicted L-arabinose ABC transport system, permease protein 1 Locus tag: Shewana3_2076 Name: araZ Funciton: Predicted L-arabinose ABC transport system, permease protein 2 Locus tag: Shewana3_2077 Name: abfA1 Funciton: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic Locus tag: Shewana3_2078 Name: abfA2 Funciton: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), cytoplasmic
	Shewana3_2070	araC	L-arabonate dehydratase (EC 4.2.1.25)
	Shewana3_2071	araY	predicted L-arabinose 1-dehydrogenase (EC 1.1.1.46)
	Shewana3_2072	araM	L-arabinose-specific 1-epimerase (mutarotase)
	Shewana3_2073	araU	Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein
	Shewana3_2074	araV	Predicted L-arabinose ABC transport system, ATP-binding protein
	Shewana3_2075	araW	Predicted L-arabinose ABC transport system, permease protein 1
	Shewana3_2076	araZ	Predicted L-arabinose ABC transport system, permease protein 2
	Shewana3_2077	abfA1	Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), periplasmic
	Shewana3_2078	abfA2	Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55), cytoplasmic

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of AraR in Shewanella sp ANA-3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --