Regulog XylR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Xylose utilization
Effector:	Xylose
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LacI
By effector - Xylose
By pathway - Xylose utilization

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)	6	3
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110	6	1
Bradyrhizobium sp. BTAi1	6	1
Brucella melitensis 16M	11	3
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42	5	3
Rhizobium leguminosarum bv. viciae 3841	6	4
Rhizobium sp. NGR234	3	1
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021	3	1
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
xylR	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -72 score = 6.28367 sequence = TATGAGGTACGTACATCATT Gene: Atu4481: Transcriptional regulator for xylose utilization, LacI family	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	* Bradyrhizobium japonicum USDA 110 Site: position = -42 score = 5.70999 sequence = AATGAGTTGCGTACCTCAAA Gene: blr1118: Transcriptional regulator for xylose utilization, LacI family	* Bradyrhizobium sp. BTAi1 Site: position = -58 score = 5.14317 sequence = AATGAGTTGCGCACCTCAAA Gene: BBta_2712: Transcriptional regulator for xylose utilization, LacI family	* Brucella melitensis 16M Site: position = -52 score = 6.31375 sequence = TTTGATTTACGTACCTCATT Gene: BMEI1385: Transcriptional regulator for xylose utilization, LacI family	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -51 score = 6.57698 sequence = TTTGATTTACGTACATCAAA Gene: RHE_CH03650: Transcriptional regulator for xylose utilization, LacI family	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -48 score = 6.57698 sequence = TTTGATTTACGTACATCAAA Gene: RL4178: Transcriptional regulator for xylose utilization, LacI family	* Rhizobium sp. NGR234 Site: position = -53 score = 6.57698 sequence = TTTGATTTACGTACATCAAA Gene: NGR_c29500: Transcriptional regulator for xylose utilization, LacI family	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -52 score = 6.29346 sequence = TCTGATTTACGTACATCAAA Gene: SMc03165: Transcriptional regulator for xylose utilization, LacI family	Xanthobacter autotrophicus Py2	Transcriptional regulator for xylose utilization, LacI family
xylB	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4482: Xylulose kinase (EC 2.7.1.17)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr1119: Xylulose kinase (EC 2.7.1.17)	Bradyrhizobium sp. BTAi1 Gene: BBta_2713: Xylulose kinase (EC 2.7.1.17)	Brucella melitensis 16M Gene: BMEI1386: Xylulose kinase (EC 2.7.1.17)	Mesorhizobium loti MAFF303099 Gene: mlr5033: Xylulose kinase (EC 2.7.1.17)	Mesorhizobium sp. BNC1 Gene: Meso_2819: Xylulose kinase (EC 2.7.1.17)	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH03649: Xylulose kinase (EC 2.7.1.17)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4177: Xylulose kinase (EC 2.7.1.17)	Rhizobium sp. NGR234 Gene: NGR_c29490: Xylulose kinase (EC 2.7.1.17)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc03164: Xylulose kinase (EC 2.7.1.17)	Xanthobacter autotrophicus Py2	Xylulose kinase (EC 2.7.1.17)
xylA	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4483: Xylose isomerase (EC 5.3.1.5)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr1120: Xylose isomerase (EC 5.3.1.5)	Bradyrhizobium sp. BTAi1 Gene: BBta_2714: Xylose isomerase (EC 5.3.1.5)	Brucella melitensis 16M Gene: BMEI1387: Xylose isomerase (EC 5.3.1.5)	Mesorhizobium loti MAFF303099 Gene: mlr5036: Xylose isomerase (EC 5.3.1.5)	Mesorhizobium sp. BNC1 Gene: Meso_2820: Xylose isomerase (EC 5.3.1.5)	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH03648: Xylose isomerase (EC 5.3.1.5)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4176: Xylose isomerase (EC 5.3.1.5)	Rhizobium sp. NGR234 Gene: NGR_c29480: Xylose isomerase (EC 5.3.1.5)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc03163: Xylose isomerase (EC 5.3.1.5)	Xanthobacter autotrophicus Py2	Xylose isomerase (EC 5.3.1.5)
xylG	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr1121: Xylose ABC transporter, ATP-binding protein XylG	Bradyrhizobium sp. BTAi1 Gene: BBta_2715: Xylose ABC transporter, ATP-binding protein XylG	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Xylose ABC transporter, ATP-binding protein XylG
xylH	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr1122: Xylose ABC transporter, permease protein XylH	Bradyrhizobium sp. BTAi1 Gene: BBta_2716: Xylose ABC transporter, permease protein XylH	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Xylose ABC transporter, permease protein XylH
xylF	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr1123: Xylose ABC transporter, periplasmic xylose-binding protein XylF	Bradyrhizobium sp. BTAi1 Gene: BBta_2717: Xylose ABC transporter, periplasmic xylose-binding protein XylF	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Xylose ABC transporter, periplasmic xylose-binding protein XylF

CRON 2.
xynA	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -41 score = 6.3869 sequence = TTTGATGTACGTACCTCAAC Gene: RHE_CH02453: Beta-xylosidase (EC 3.2.1.37)	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -50 score = 6.00309 sequence = TGTGATGTACGTACAGCAAA Gene: RL2788: Beta-xylosidase (EC 3.2.1.37)	Rhizobium sp. NGR234 Gene: NGR_c17670: Beta-xylosidase (EC 3.2.1.37)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04247: Beta-xylosidase (EC 3.2.1.37)	Xanthobacter autotrophicus Py2	Beta-xylosidase (EC 3.2.1.37)

CRON 3.
COG5001	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -63 score = 5.8848 sequence = TTTGAGGTACGTCCATCAGA Gene: RHE_CH01398: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -72 score = 5.20507 sequence = AATGATGCACGTACGTCAGT Gene: RL1519: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

CRON 4.
COG3576	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -104 score = 6.49928 sequence = TTTGAGGTACGTACCTCAAT Gene: Atu4480: Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -115 score = 6.22643 sequence = TCTGAGGTACGTACATCATA Gene: RL1181: Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase

CRON 5.
Atu3200	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -129 score = 6.18194 sequence = ATTGCTTTACGTACCTCAAA Gene: Atu3200: ABC transporter, nucleotide binding/ATPase protein (ribose)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	* Brucella melitensis 16M Site: position = -102 score = 6.03262 sequence = TTTGCTTTACGTACCTCAAC Gene: BMEI1392: ABC transporter, nucleotide binding/ATPase protein (ribose)	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	ABC transporter, nucleotide binding/ATPase protein (ribose)
Atu3199	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3199: ABC transporter, membrane spanning protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M Gene: BMEI1391: ABC transporter, membrane spanning protein	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	ABC transporter, membrane spanning protein
Atu3198	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3198: ABC transporter, substrate binding protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M Gene: BMEI1390: ABC transporter, substrate binding protein	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	ABC transporter, substrate binding protein
Atu3235	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M Gene: BMEI1389: Sugar phosphate isomerases/epimerases	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Sugar phosphate isomerases/epimerases
Atu4375	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M Gene: BMEI1388: Oxidoreductase, Gfo/Idh/MocA family	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Oxidoreductase, Gfo/Idh/MocA family

CRON 6.
xylF2	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	* Brucella melitensis 16M Site: position = -320 score = 6.31375 sequence = AATGAGGTACGTAAATCAAA Gene: BMEII0146: Xylose ABC transporter, periplasmic xylose-binding protein XylF	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Xylose ABC transporter, periplasmic xylose-binding protein XylF
xylG2	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M Gene: BMEII0145: Xylose ABC transporter, ATP-binding protein XylG	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Xylose ABC transporter, ATP-binding protein XylG
xylH2	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M Gene: BMEII0144: Xylose ABC transporter, permease protein XylH	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Xylose ABC transporter, permease protein XylH

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog XylR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --