Regulog SPO0590 - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Sugar utilization
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 21 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - LacI
By pathway - Sugar utilization

Statistics of regulated genes
Genome	Genes	Operons
Hyphomonas neptunium ATCC 15444
Jannaschia sp. CCS1	12	4
Loktanella vestfoldensis SKA53
Oceanicaulis alexandrii HTCC2633
Oceanicola batsensis HTCC2597
Oceanicola granulosus HTCC2516
Paracoccus denitrificans PD1222
Rhodobacter sphaeroides 2.4.1
Rhodobacterales bacterium HTCC2654
Roseobacter sp. MED193	11	2
Roseovarius nubinhibens ISM	5	2
Roseovarius sp. 217	9	2
Silicibacter TM1040
Silicibacter pomeroyi DSS-3	9	2
Sulfitobacter sp. EE-36

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
dctP	Hyphomonas neptunium ATCC 15444	* Jannaschia sp. CCS1 Site: position = -281 score = 5.7057 sequence = AATTGTAACAGCTTACATTG Gene: Jann_1349: C4-dicarboxylate ABC transporter, periplasmic component	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	* Roseobacter sp. MED193 Site: position = -275 score = 6.67598 sequence = CCATGTAAGCGCTTACATTG Site: position = -298 score = 6.08106 sequence = CAATGTAAGGGCTTGCATAA Gene: MED193_17079: C4-dicarboxylate ABC transporter, periplasmic component	Roseovarius nubinhibens ISM	* Roseovarius sp. 217 Site: position = -265 score = 6.64346 sequence = ATATGTAAGCGCTTACATTT Gene: ROS217_11206: C4-dicarboxylate ABC transporter, periplasmic component	Silicibacter TM1040	* Silicibacter pomeroyi DSS-3 Site: position = -292 score = 5.60383 sequence = GCGTGTAAGCGCTTGCATCG Site: position = -270 score = 6.85773 sequence = AAATGTAAGCGCTTACATTG Gene: SPO0591: C4-dicarboxylate ABC transporter, periplasmic component	Sulfitobacter sp. EE-36	C4-dicarboxylate ABC transporter, periplasmic component
dctQ	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1350: C4-dicarboxylate ABC transporter, small permease component	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_17074: C4-dicarboxylate ABC transporter, small permease component	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_11211: C4-dicarboxylate ABC transporter, small permease component	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO0592: C4-dicarboxylate ABC transporter, small permease component	Sulfitobacter sp. EE-36	C4-dicarboxylate ABC transporter, small permease component
dctM	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1351: C4-dicarboxylate ABC transporter, large permease component	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_17069: C4-dicarboxylate ABC transporter, large permease component	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_11216: C4-dicarboxylate ABC transporter, large permease component	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO0593: C4-dicarboxylate ABC transporter, large permease component	Sulfitobacter sp. EE-36	C4-dicarboxylate ABC transporter, large permease component
hisD1	Hyphomonas neptunium ATCC 15444	* Jannaschia sp. CCS1 Site: position = -107 score = 5.71418 sequence = TAATGTAAGGGCTTACACAC Site: position = -130 score = 5.11044 sequence = AATTGTAATGGCTTGCATCG Gene: Jann_1398: putative histidinol dehydrogenase	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_17064: putative histidinol dehydrogenase	* Roseovarius nubinhibens ISM Site: position = -109 score = 6.21981 sequence = AAATGTAAGCGCTTGCAATA Site: position = -86 score = 6.50367 sequence = CCATGCAAGCGCTTACATTG Gene: ISM_05010: putative histidinol dehydrogenase	Roseovarius sp. 217 Gene: ROS217_11221: putative histidinol dehydrogenase	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO0594: putative histidinol dehydrogenase	Sulfitobacter sp. EE-36	putative histidinol dehydrogenase
gno	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1399: Gluconate 5-dehydrogenase (EC 1.1.1.69)	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_17059: Gluconate 5-dehydrogenase (EC 1.1.1.69)	Roseovarius nubinhibens ISM Gene: ISM_05015: Gluconate 5-dehydrogenase (EC 1.1.1.69)	Roseovarius sp. 217 Gene: ROS217_11226: Gluconate 5-dehydrogenase (EC 1.1.1.69)	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO0595: Gluconate 5-dehydrogenase (EC 1.1.1.69)	Sulfitobacter sp. EE-36	Gluconate 5-dehydrogenase (EC 1.1.1.69)
sdh	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1400: Sorbitol dehydrogenase (EC 1.1.1.14)	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_17054: Sorbitol dehydrogenase (EC 1.1.1.14)	Roseovarius nubinhibens ISM Gene: ISM_05020: Sorbitol dehydrogenase (EC 1.1.1.14)	Roseovarius sp. 217 Gene: ROS217_11231: Sorbitol dehydrogenase (EC 1.1.1.14)	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO0596: Sorbitol dehydrogenase (EC 1.1.1.14)	Sulfitobacter sp. EE-36	Sorbitol dehydrogenase (EC 1.1.1.14)
usp	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1352: Universal stress family protein	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_17049: Universal stress family protein	Roseovarius nubinhibens ISM Gene: ISM_05025: Universal stress family protein	Roseovarius sp. 217 Gene: ROS217_11236: Universal stress family protein	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO0597: Universal stress family protein	Sulfitobacter sp. EE-36	Universal stress family protein
comD	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1401: Sulfopyruvate decarboxylase - alpha subunit (EC 4.1.1.79)	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_17044: Sulfopyruvate decarboxylase - alpha subunit (EC 4.1.1.79)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Sulfopyruvate decarboxylase - alpha subunit (EC 4.1.1.79)
comE	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1402: Sulfopyruvate decarboxylase - beta subunit (EC 4.1.1.79)	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_17039: Sulfopyruvate decarboxylase - beta subunit (EC 4.1.1.79)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Sulfitobacter sp. EE-36	Sulfopyruvate decarboxylase - beta subunit (EC 4.1.1.79)
ldh	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1 Gene: Jann_1403: L-lactate dehydrogenase (EC 1.1.2.3)	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193 Gene: MED193_17034: L-lactate dehydrogenase (EC 1.1.2.3)	Roseovarius nubinhibens ISM	Roseovarius sp. 217 Gene: ROS217_11241: L-lactate dehydrogenase (EC 1.1.2.3)	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPO0598: L-lactate dehydrogenase (EC 1.1.2.3)	Sulfitobacter sp. EE-36	L-lactate dehydrogenase (EC 1.1.2.3)

CRON 2.
SPO0590	Hyphomonas neptunium ATCC 15444	2 Jannaschia sp. CCS1* Site: position = -79 score = 5.71418 sequence = GTGTGTAAGCCCTTACATTA Site: position = -56 score = 5.11044 sequence = CGATGCAAGCCATTACAATT Gene: Jann_1397: Transcriptional regulator, LacI family Site: position = -118 score = 5.7057 sequence = CAATGTAAGCTGTTACAATT Site: position = -95 score = 6.65994 sequence = AAATGCAAGCGCTTACATTT Gene: Jann_1347: Transcriptional regulator, LacI family	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	* Roseobacter sp. MED193 Site: position = -136 score = 6.67598 sequence = CAATGTAAGCGCTTACATGG Site: position = -113 score = 6.08106 sequence = TTATGCAAGCCCTTACATTG Gene: MED193_17089: Transcriptional regulator, LacI family	* Roseovarius nubinhibens ISM Site: position = -79 score = 6.21981 sequence = TATTGCAAGCGCTTACATTT Site: position = -102 score = 6.50367 sequence = CAATGTAAGCGCTTGCATGG Gene: ISM_05005: Transcriptional regulator, LacI family	* Roseovarius sp. 217 Site: position = -96 score = 6.64346 sequence = AAATGTAAGCGCTTACATAT Gene: ROS217_11196: Transcriptional regulator, LacI family	Silicibacter TM1040	* Silicibacter pomeroyi DSS-3 Site: position = -115 score = 6.85773 sequence = CAATGTAAGCGCTTACATTT Site: position = -93 score = 5.60383 sequence = CGATGCAAGCGCTTACACGC Gene: SPO0590: Transcriptional regulator, LacI family	Sulfitobacter sp. EE-36	Transcriptional regulator, LacI family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SPO0590 - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --