Regulog SPO0590 - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Sugar utilization |
| Effector: | |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - LacI
- By pathway - Sugar utilization
| Genome | Genes | Operons |
|---|---|---|
| Hyphomonas neptunium ATCC 15444 | ||
| Jannaschia sp. CCS1 | 12 | 4 |
| Loktanella vestfoldensis SKA53 | ||
| Oceanicaulis alexandrii HTCC2633 | ||
| Oceanicola batsensis HTCC2597 | ||
| Oceanicola granulosus HTCC2516 | ||
| Paracoccus denitrificans PD1222 | ||
| Rhodobacter sphaeroides 2.4.1 | ||
| Rhodobacterales bacterium HTCC2654 | ||
| Roseobacter sp. MED193 | 11 | 2 |
| Roseovarius nubinhibens ISM | 5 | 2 |
| Roseovarius sp. 217 | 9 | 2 |
| Silicibacter TM1040 | ||
| Silicibacter pomeroyi DSS-3 | 9 | 2 |
| Sulfitobacter sp. EE-36 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| dctP |
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Jannaschia sp. CCS1 Site: position = -281 score = 5.7057 sequence = AATTGTAACAGCTTACATTG Gene: Jann_1349: C4-dicarboxylate ABC transporter, periplasmic component |
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Roseobacter sp. MED193 Site: position = -275 score = 6.67598 sequence = CCATGTAAGCGCTTACATTG Site: position = -298 score = 6.08106 sequence = CAATGTAAGGGCTTGCATAA Gene: MED193_17079: C4-dicarboxylate ABC transporter, periplasmic component |
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Roseovarius sp. 217 Site: position = -265 score = 6.64346 sequence = ATATGTAAGCGCTTACATTT Gene: ROS217_11206: C4-dicarboxylate ABC transporter, periplasmic component |
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Silicibacter pomeroyi DSS-3 Site: position = -292 score = 5.60383 sequence = GCGTGTAAGCGCTTGCATCG Site: position = -270 score = 6.85773 sequence = AAATGTAAGCGCTTACATTG Gene: SPO0591: C4-dicarboxylate ABC transporter, periplasmic component |
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C4-dicarboxylate ABC transporter, periplasmic component |
| dctQ |
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Gene: Jann_1350: C4-dicarboxylate ABC transporter, small permease component |
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Gene: MED193_17074: C4-dicarboxylate ABC transporter, small permease component |
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Gene: ROS217_11211: C4-dicarboxylate ABC transporter, small permease component |
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Gene: SPO0592: C4-dicarboxylate ABC transporter, small permease component |
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C4-dicarboxylate ABC transporter, small permease component |
| dctM |
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Gene: Jann_1351: C4-dicarboxylate ABC transporter, large permease component |
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Gene: MED193_17069: C4-dicarboxylate ABC transporter, large permease component |
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Gene: ROS217_11216: C4-dicarboxylate ABC transporter, large permease component |
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Gene: SPO0593: C4-dicarboxylate ABC transporter, large permease component |
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C4-dicarboxylate ABC transporter, large permease component |
| hisD1 |
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Jannaschia sp. CCS1 Site: position = -107 score = 5.71418 sequence = TAATGTAAGGGCTTACACAC Site: position = -130 score = 5.11044 sequence = AATTGTAATGGCTTGCATCG Gene: Jann_1398: putative histidinol dehydrogenase |
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Gene: MED193_17064: putative histidinol dehydrogenase |
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Roseovarius nubinhibens ISM Site: position = -109 score = 6.21981 sequence = AAATGTAAGCGCTTGCAATA Site: position = -86 score = 6.50367 sequence = CCATGCAAGCGCTTACATTG Gene: ISM_05010: putative histidinol dehydrogenase |
Gene: ROS217_11221: putative histidinol dehydrogenase |
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Gene: SPO0594: putative histidinol dehydrogenase |
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putative histidinol dehydrogenase |
| gno |
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Gene: Jann_1399: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Gene: MED193_17059: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
Gene: ISM_05015: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
Gene: ROS217_11226: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Gene: SPO0595: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Gluconate 5-dehydrogenase (EC 1.1.1.69) |
| sdh |
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Gene: Jann_1400: Sorbitol dehydrogenase (EC 1.1.1.14) |
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Gene: MED193_17054: Sorbitol dehydrogenase (EC 1.1.1.14) |
Gene: ISM_05020: Sorbitol dehydrogenase (EC 1.1.1.14) |
Gene: ROS217_11231: Sorbitol dehydrogenase (EC 1.1.1.14) |
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Gene: SPO0596: Sorbitol dehydrogenase (EC 1.1.1.14) |
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Sorbitol dehydrogenase (EC 1.1.1.14) |
| usp |
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Gene: Jann_1352: Universal stress family protein |
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Gene: MED193_17049: Universal stress family protein |
Gene: ISM_05025: Universal stress family protein |
Gene: ROS217_11236: Universal stress family protein |
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Gene: SPO0597: Universal stress family protein |
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Universal stress family protein |
| comD |
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Gene: Jann_1401: Sulfopyruvate decarboxylase - alpha subunit (EC 4.1.1.79) |
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Gene: MED193_17044: Sulfopyruvate decarboxylase - alpha subunit (EC 4.1.1.79) |
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Sulfopyruvate decarboxylase - alpha subunit (EC 4.1.1.79) |
| comE |
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Gene: Jann_1402: Sulfopyruvate decarboxylase - beta subunit (EC 4.1.1.79) |
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Gene: MED193_17039: Sulfopyruvate decarboxylase - beta subunit (EC 4.1.1.79) |
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Sulfopyruvate decarboxylase - beta subunit (EC 4.1.1.79) |
| ldh |
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Gene: Jann_1403: L-lactate dehydrogenase (EC 1.1.2.3) |
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Gene: MED193_17034: L-lactate dehydrogenase (EC 1.1.2.3) |
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Gene: ROS217_11241: L-lactate dehydrogenase (EC 1.1.2.3) |
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Gene: SPO0598: L-lactate dehydrogenase (EC 1.1.2.3) |
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L-lactate dehydrogenase (EC 1.1.2.3) |
| CRON 2. | ||||||||||||||||
| SPO0590 |
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*2
Jannaschia sp. CCS1 Site: position = -79 score = 5.71418 sequence = GTGTGTAAGCCCTTACATTA Site: position = -56 score = 5.11044 sequence = CGATGCAAGCCATTACAATT Gene: Jann_1397: Transcriptional regulator, LacI family Site: position = -118 score = 5.7057 sequence = CAATGTAAGCTGTTACAATT Site: position = -95 score = 6.65994 sequence = AAATGCAAGCGCTTACATTT Gene: Jann_1347: Transcriptional regulator, LacI family |
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Roseobacter sp. MED193 Site: position = -136 score = 6.67598 sequence = CAATGTAAGCGCTTACATGG Site: position = -113 score = 6.08106 sequence = TTATGCAAGCCCTTACATTG Gene: MED193_17089: Transcriptional regulator, LacI family |
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Roseovarius nubinhibens ISM Site: position = -79 score = 6.21981 sequence = TATTGCAAGCGCTTACATTT Site: position = -102 score = 6.50367 sequence = CAATGTAAGCGCTTGCATGG Gene: ISM_05005: Transcriptional regulator, LacI family |
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Roseovarius sp. 217 Site: position = -96 score = 6.64346 sequence = AAATGTAAGCGCTTACATAT Gene: ROS217_11196: Transcriptional regulator, LacI family |
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Silicibacter pomeroyi DSS-3 Site: position = -115 score = 6.85773 sequence = CAATGTAAGCGCTTACATTT Site: position = -93 score = 5.60383 sequence = CGATGCAAGCGCTTACACGC Gene: SPO0590: Transcriptional regulator, LacI family |
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Transcriptional regulator, LacI family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |