Statistics of regulated genes

Genome	Genes	Operons
Nocardia farcinica IFM 10152	7	1
Rhodococcus erythropolis PR4
Rhodococcus opacus B4
Rhodococcus sp. RHA1	10	2

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes					Function
CRON 1.
rhaG	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	* Rhodococcus sp. RHA1 Site: position = -218 score = 5.77936 sequence = CTCTTGAATCGCTTCAGTCC Site: position = -30 score = 6.05618 sequence = GAAATGAACCGTTTCAATCG Gene: RHA1_ro04085: L-rhamnose ABC transporter, duplicated ATP-binding component	L-rhamnose ABC transporter, duplicated ATP-binding component
rhaJ	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro04086: L-rhamnose ABC transporter, permease component 2	L-rhamnose ABC transporter, permease component 2
rhaH	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro04087: L-rhamnose ABC transporter, permease component 1	L-rhamnose ABC transporter, permease component 1
rhaF	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro04088: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein	L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
rhaM	* Nocardia farcinica IFM 10152 Site: position = -34 score = 5.65885 sequence = GTATTGAAACGTTTCAACGA Gene: nfa32910: L-rhamnose mutarotase	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro04089: L-rhamnose mutarotase	L-rhamnose mutarotase
rhaI	Nocardia farcinica IFM 10152 Gene: nfa32930: Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro04090: Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)	Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)
RHA1_ro04091	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro04091: putative L-arabinose isomerase	putative L-arabinose isomerase
rhaEW	Nocardia farcinica IFM 10152 Gene: nfa32940: Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro04092: Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)	Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)
rhaB	Nocardia farcinica IFM 10152 Gene: nfa32950: Rhamnulokinase (EC 2.7.1.5)	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro04093: Rhamnulokinase (EC 2.7.1.5)	Rhamnulokinase (EC 2.7.1.5)
rhaY	Nocardia farcinica IFM 10152 Gene: nfa32920: Predicted L-rhamnose permease RhaY	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1	Predicted L-rhamnose permease RhaY
lldD	Nocardia farcinica IFM 10152 Gene: nfa32960: L-lactate dehydrogenase (EC 1.1.2.3)	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro02988: L-lactate dehydrogenase (EC 1.1.2.3)	L-lactate dehydrogenase (EC 1.1.2.3)
rhaR	Nocardia farcinica IFM 10152 Gene: nfa32970: Transcriptional regulator of rhamnose utilization, LacI family	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	* Rhodococcus sp. RHA1 Site: position = -282 score = 6.05618 sequence = CGATTGAAACGGTTCATTTC Site: position = -94 score = 5.77936 sequence = GGACTGAAGCGATTCAAGAG Gene: RHA1_ro04084: Transcriptional regulator of rhamnose utilization, LacI family	Transcriptional regulator of rhamnose utilization, LacI family

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