Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog RL4253 - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Sugar utilization
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42 5 2
Rhizobium leguminosarum bv. viciae 3841 5 2
Rhizobium sp. NGR234 6 2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
RL4253
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -81
score = 6.11577
sequence = AATTTAAAACGTTTTCATTG

Site:
position = -202
score = 5.82936
sequence = AATTTAAAACGTTATAAGCC

Gene: RHE_CH03710: Transcriptional regulator, LacI family
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -82
score = 6.05236
sequence = AATTTAAAACGTTTCCATTC

Site:
position = -203
score = 6.43867
sequence = AATTTAAAACGTTATAAATC

Gene: RL4253: Transcriptional regulator, LacI family
*
Rhizobium sp. NGR234

Site:
position = -88
score = 5.00711
sequence = GATTTAAAACGTTTGCATCA

Site:
position = -225
score = 6.21277
sequence = AATTTAAAACGTTACAAATC

Gene: NGR_c33050: Transcriptional regulator, LacI family
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Transcriptional regulator, LacI family
 
CRON 2.
RL4252
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -123
score = 5.82936
sequence = GGCTTATAACGTTTTAAATT

Site:
position = -244
score = 6.11577
sequence = CAATGAAAACGTTTTAAATT

Gene: RHE_CH03709: sugar ABC transporter, substrate-binding component
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -245
score = 6.05236
sequence = GAATGGAAACGTTTTAAATT

Site:
position = -124
score = 6.43867
sequence = GATTTATAACGTTTTAAATT

Gene: RL4252: sugar ABC transporter, substrate-binding component
*
Rhizobium sp. NGR234

Site:
position = -129
score = 6.21277
sequence = GATTTGTAACGTTTTAAATT

Gene: NGR_c33060: sugar ABC transporter, substrate-binding component
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
sugar ABC transporter, substrate-binding component
RL4251
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH03708: sugar ABC transporter, permease protein
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL4251: sugar ABC transporter, permease protein
 
Rhizobium sp. NGR234

Gene: NGR_c33070: sugar ABC transporter, permease protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
sugar ABC transporter, permease protein
RL4250
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH03707: sugar ABC transporter, permease protein
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL4250: sugar ABC transporter, permease protein
 
Rhizobium sp. NGR234

Gene: NGR_c33080: sugar ABC transporter, permease protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
sugar ABC transporter, permease protein
RL4249
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH03706: sugar ABC transporter, ATP-binding protein
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL4249: sugar ABC transporter, ATP-binding protein
 
Rhizobium sp. NGR234

Gene: NGR_c33090: sugar ABC transporter, ATP-binding protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
sugar ABC transporter, ATP-binding protein
COG2303
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_c33110: Choline dehydrogenase and related flavoproteins
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Choline dehydrogenase and related flavoproteins
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD