Regulog SMb20667 - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Sugar utilization
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 29 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LacI
By pathway - Sugar utilization

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571	5	2
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42	5	2
Rhizobium leguminosarum bv. viciae 3841	6	2
Rhizobium sp. NGR234	6	2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021	5	2
Xanthobacter autotrophicus Py2	6	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
SMb20667	Agrobacterium tumefaciens str. C58 (Cereon)	* Azorhizobium caulinodans ORS 571 Site: position = -2 score = 6.61902 sequence = TTTTGGCAGCGCTGCCATTT Site: position = -58 score = 6.61902 sequence = TTTTGGCAGCGCTGCCATTT Gene: AZC_2778: Putative transcriptional regulator SMb20667, LacI family	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -310 score = 6.59375 sequence = TTTTGGCAGCGCTGCCATTC Site: position = -256 score = 6.61902 sequence = AAATGGCAGCGCTGCCAAAA Gene: RHE_PF00344: Putative transcriptional regulator SMb20667, LacI family	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -200 score = 6.59375 sequence = TTTTGGCAGCGCTGCCATTC Site: position = -169 score = 6.54869 sequence = TTTTGGCAGCGCTGCCAACG Site: position = -146 score = 6.50884 sequence = AATTGGTAGCGCTGCCAAAA Gene: pRL120618: Putative transcriptional regulator SMb20667, LacI family	* Rhizobium sp. NGR234 Site: position = -161 score = 6.35756 sequence = AGATGGCAGCGCTGCCATTA Site: position = -129 score = 6.37894 sequence = GTTTGGCAGCGCTGCCAAGT Site: position = -106 score = 6.50884 sequence = AATTGGTAGCGCTGCCAAAA Gene: NGR_b20310: Putative transcriptional regulator SMb20667, LacI family	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -81 score = 6.50884 sequence = AATTGGTAGCGCTGCCAAAA Site: position = -103 score = 6.4508 sequence = CTTTGGCAGCGCTGCCAACC Gene: SMb20667: Putative transcriptional regulator SMb20667, LacI family	* Xanthobacter autotrophicus Py2 Site: position = -155 score = 6.38939 sequence = AAATGGTAGCGCTGCCAAAA Site: position = -210 score = 6.07063 sequence = GCATGGCAGCGCTGCCATCA Site: position = -178 score = 6.18486 sequence = CAGTGGCAGCGCTGCCAAAC Gene: Xaut_1029: Putative transcriptional regulator SMb20667, LacI family	Putative transcriptional regulator SMb20667, LacI family
ygbL	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_2779: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PF00343: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120619: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	Rhizobium sp. NGR234 Gene: NGR_b20300: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20666: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	Xanthobacter autotrophicus Py2 Gene: Xaut_1030: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

CRON 2.
COG2271	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -56 score = 6.50884 sequence = TTTTGGCAGCGCTACCAATT Site: position = -33 score = 6.54869 sequence = CGTTGGCAGCGCTGCCAAAA Gene: pRL120617: Putative sugar acid transporter, MFS family	* Rhizobium sp. NGR234 Site: position = -136 score = 6.50884 sequence = TTTTGGCAGCGCTACCAATT Site: position = -113 score = 6.37894 sequence = ACTTGGCAGCGCTGCCAAAC Site: position = -81 score = 6.35756 sequence = TAATGGCAGCGCTGCCATCT Gene: NGR_b20320: Putative sugar acid transporter, MFS family	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	* Xanthobacter autotrophicus Py2 Site: position = -131 score = 6.38939 sequence = TTTTGGCAGCGCTACCATTT Site: position = -108 score = 6.18486 sequence = GTTTGGCAGCGCTGCCACTG Site: position = -76 score = 6.07063 sequence = TGATGGCAGCGCTGCCATGC Gene: Xaut_1028: Putative sugar acid transporter, MFS family	Putative sugar acid transporter, MFS family
ygbJ	Agrobacterium tumefaciens str. C58 (Cereon)	* Azorhizobium caulinodans ORS 571 Site: position = -125 score = 6.61902 sequence = AAATGGCAGCGCTGCCAAAA Site: position = -69 score = 6.61902 sequence = AAATGGCAGCGCTGCCAAAA Gene: AZC_2777: 3-hydroxyacid dehydrogenase/reductase	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr2928: 3-hydroxyacid dehydrogenase/reductase	Bradyrhizobium sp. BTAi1 Gene: BBta_2897: 3-hydroxyacid dehydrogenase/reductase	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -99 score = 6.61902 sequence = TTTTGGCAGCGCTGCCATTT Site: position = -45 score = 6.59375 sequence = GAATGGCAGCGCTGCCAAAA Gene: RHE_PF00345: 3-hydroxyacid dehydrogenase/reductase	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120616: 3-hydroxyacid dehydrogenase/reductase	Rhizobium sp. NGR234 Gene: NGR_b20330: 3-hydroxyacid dehydrogenase/reductase	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -81 score = 6.50884 sequence = TTTTGGCAGCGCTACCAATT Site: position = -59 score = 6.4508 sequence = GGTTGGCAGCGCTGCCAAAG Gene: SMb20668: 3-hydroxyacid dehydrogenase/reductase	Xanthobacter autotrophicus Py2 Gene: Xaut_1027: 3-hydroxyacid dehydrogenase/reductase	3-hydroxyacid dehydrogenase/reductase
ygbM	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_2776: Hydroxypyruvate isomerase (EC 5.3.1.22)	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr2929: Hydroxypyruvate isomerase (EC 5.3.1.22)	Bradyrhizobium sp. BTAi1 Gene: BBta_2898: Hydroxypyruvate isomerase (EC 5.3.1.22)	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PF00346: Hydroxypyruvate isomerase (EC 5.3.1.22)	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120615: Hydroxypyruvate isomerase (EC 5.3.1.22)	Rhizobium sp. NGR234 Gene: NGR_b20340: Hydroxypyruvate isomerase (EC 5.3.1.22)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20669: Hydroxypyruvate isomerase (EC 5.3.1.22)	Xanthobacter autotrophicus Py2 Gene: Xaut_1026: Hydroxypyruvate isomerase (EC 5.3.1.22)	Hydroxypyruvate isomerase (EC 5.3.1.22)
ygbK	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571 Gene: AZC_2775: Uncharacterized protein conserved in bacteria	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr2930: Uncharacterized protein conserved in bacteria	Bradyrhizobium sp. BTAi1 Gene: BBta_2899: Uncharacterized protein conserved in bacteria	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PF00347: Uncharacterized protein conserved in bacteria	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120614: Uncharacterized protein conserved in bacteria	Rhizobium sp. NGR234 Gene: NGR_b20350: Uncharacterized protein conserved in bacteria	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20670: Uncharacterized protein conserved in bacteria	Xanthobacter autotrophicus Py2 Gene: Xaut_1025: Uncharacterized protein conserved in bacteria	Uncharacterized protein conserved in bacteria

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SMb20667 - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --