Regulog PsiR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Psicose utilization
Effector:	Psicose
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 16 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LacI
By effector - Psicose
By pathway - Psicose utilization

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)	8	2
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841	6	2
Rhizobium sp. NGR234	8	2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021	8	2
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
psiA	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -288 score = 6.40198 sequence = TTGCACCATCGATTGTGCAG Site: position = -266 score = 5.81251 sequence = TGGCAATATCGATTGTGCAT Gene: Atu4744: Predicted psicose ABC transporter, substrate-binding protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -149 score = 5.27024 sequence = AAGAAAGATCGATTGTGCAA Site: position = -171 score = 6.64981 sequence = TTGCACCATCGATTGTGCAA Gene: pRL120191: Predicted psicose ABC transporter, substrate-binding protein	* Rhizobium sp. NGR234 Site: position = -173 score = 6.64981 sequence = TTGCACCATCGATTGTGCAA Site: position = -151 score = 5.18165 sequence = AAGAAATATCGATTGTGCAG Gene: NGR_b11530: Predicted psicose ABC transporter, substrate-binding protein	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -151 score = 5.42948 sequence = AAGAAATATCGATTGTGCAA Site: position = -173 score = 6.64981 sequence = TTGCACCATCGATTGTGCAA Gene: SMb20484: Predicted psicose ABC transporter, substrate-binding protein	Xanthobacter autotrophicus Py2	Predicted psicose ABC transporter, substrate-binding protein
psiB	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4745: Predicted psicose ABC transporter, ATP-binding protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120192: Predicted psicose ABC transporter, ATP-binding protein	Rhizobium sp. NGR234 Gene: NGR_b11540: Predicted psicose ABC transporter, ATP-binding protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20485: Predicted psicose ABC transporter, ATP-binding protein	Xanthobacter autotrophicus Py2	Predicted psicose ABC transporter, ATP-binding protein
psiC	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4746: Predicted psicose ABC transporter, inner membrane protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120193: Predicted psicose ABC transporter, inner membrane protein	Rhizobium sp. NGR234 Gene: NGR_b11550: Predicted psicose ABC transporter, inner membrane protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20486: Predicted psicose ABC transporter, inner membrane protein	Xanthobacter autotrophicus Py2	Predicted psicose ABC transporter, inner membrane protein
psiD	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4747: Predicted psicose ABC transporter, inner membrane protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120194: Predicted psicose ABC transporter, inner membrane protein	Rhizobium sp. NGR234 Gene: NGR_b11560: Predicted psicose ABC transporter, inner membrane protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20487: Predicted psicose ABC transporter, inner membrane protein	Xanthobacter autotrophicus Py2	Predicted psicose ABC transporter, inner membrane protein
psiE	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4748: Fructose:psicose-3-epimerase (EC 5.3.1.-)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120195: Fructose:psicose-3-epimerase (EC 5.3.1.-)	Rhizobium sp. NGR234 Gene: NGR_b11570: Fructose:psicose-3-epimerase (EC 5.3.1.-)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20488: Fructose:psicose-3-epimerase (EC 5.3.1.-)	Xanthobacter autotrophicus Py2	Fructose:psicose-3-epimerase (EC 5.3.1.-)
frcK	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4749: Fructokinase FrcK (EC 2.7.1.4)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M Gene: BMEI1883: Fructokinase FrcK (EC 2.7.1.4)	Mesorhizobium loti MAFF303099 Gene: mll4957: Fructokinase FrcK (EC 2.7.1.4)	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH00468: Fructokinase FrcK (EC 2.7.1.4)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0492: Fructokinase FrcK (EC 2.7.1.4)	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Fructokinase FrcK (EC 2.7.1.4)
dpe	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4750: D-psicose 3-epimerase	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	D-psicose 3-epimerase
psiK	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b11580: Predicted fructokinase, FGGY family	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20489: Predicted fructokinase, FGGY family	Xanthobacter autotrophicus Py2	Predicted fructokinase, FGGY family
fucA	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b11590: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20490: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	Xanthobacter autotrophicus Py2	Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

CRON 2.
psiR	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -116 score = 5.81251 sequence = ATGCACAATCGATATTGCCA Site: position = -94 score = 6.40198 sequence = CTGCACAATCGATGGTGCAA Gene: Atu4743: Predicted transcriptional regulator for psicose utilization, LacI family	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -116 score = 5.27024 sequence = TTGCACAATCGATCTTTCTT Site: position = -94 score = 6.64981 sequence = TTGCACAATCGATGGTGCAA Gene: pRL120189: Predicted transcriptional regulator for psicose utilization, LacI family	* Rhizobium sp. NGR234 Site: position = -109 score = 5.18165 sequence = CTGCACAATCGATATTTCTT Site: position = -87 score = 6.64981 sequence = TTGCACAATCGATGGTGCAA Gene: NGR_b11520: Predicted transcriptional regulator for psicose utilization, LacI family	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -142 score = 5.42948 sequence = TTGCACAATCGATATTTCTT Site: position = -120 score = 6.64981 sequence = TTGCACAATCGATGGTGCAA Gene: SMb20483: Predicted transcriptional regulator for psicose utilization, LacI family	Xanthobacter autotrophicus Py2	Predicted transcriptional regulator for psicose utilization, LacI family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PsiR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --