Regulog AglR - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Alpha-glucosides utilization
Effector:	Alpha-glucoside; Maltose; Sucrose; Trehalose
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 14 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - LacI
By effector - Alpha-glucoside
By effector - Maltose
By effector - Sucrose
By effector - Trehalose
By pathway - Alpha-glucosides utilization

Statistics of regulated genes
Genome	Genes	Operons
Rhodobacter sphaeroides 2.4.1
Paracoccus denitrificans PD1222
Jannaschia sp. CCS1	8	2
Rhodobacterales bacterium HTCC2654	8	2
Oceanicola granulosus HTCC2516	7	2
Oceanicola batsensis HTCC2597
Loktanella vestfoldensis SKA53	8	2
Roseovarius nubinhibens ISM
Roseovarius sp. 217
Sulfitobacter sp. EE-36
Silicibacter TM1040	7	2
Silicibacter pomeroyi DSS-3
Roseobacter sp. MED193
Hyphomonas neptunium ATCC 15444
Oceanicaulis alexandrii HTCC2633

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
aglE	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2873: Alpha-glucoside ABC transporter periplasmic sugar-binding protein	Paracoccus denitrificans PD1222	* Jannaschia sp. CCS1 Site: position = -104 score = 4.90517 sequence = ACCCCAAAGCGCTTTGAAAA Gene: Jann_1946: Alpha-glucoside ABC transporter periplasmic sugar-binding protein	* Rhodobacterales bacterium HTCC2654 Site: position = -97 score = 5.61932 sequence = CATCCAAAACGGTTTGGAGC Gene: RB2654_03739: Alpha-glucoside ABC transporter periplasmic sugar-binding protein	* Oceanicola granulosus HTCC2516 Site: position = -96 score = 6.06337 sequence = CGTCCAAAGCGCTTTGATCC Gene: OG2516_02419: Alpha-glucoside ABC transporter periplasmic sugar-binding protein	Oceanicola batsensis HTCC2597	* Loktanella vestfoldensis SKA53 Site: position = -112 score = 6.20408 sequence = CATCCAAAGCGCTTTGGTAC Gene: SKA53_03279: Alpha-glucoside ABC transporter periplasmic sugar-binding protein	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	* Silicibacter TM1040 Site: position = -257 score = 5.08268 sequence = CCTCCAAAGCGCTTTAAAAA Site: position = -102 score = 6.3448 sequence = CAATCAAAGCGCTTTGAATC Gene: TM1040_3307: Alpha-glucoside ABC transporter periplasmic sugar-binding protein	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Alpha-glucoside ABC transporter periplasmic sugar-binding protein
aglF	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2872: Alpha-glucoside ABC transporter permease protein	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_1947: Alpha-glucoside ABC transporter permease protein	Rhodobacterales bacterium HTCC2654 Gene: RB2654_03734: Alpha-glucoside ABC transporter permease protein	Oceanicola granulosus HTCC2516 Gene: OG2516_02424: Alpha-glucoside ABC transporter permease protein	Oceanicola batsensis HTCC2597	Loktanella vestfoldensis SKA53 Gene: SKA53_03284: Alpha-glucoside ABC transporter permease protein	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_3306: Alpha-glucoside ABC transporter permease protein	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Alpha-glucoside ABC transporter permease protein
aglG	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2871: Alpha-glucoside ABC transporter permease protein	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_1948: Alpha-glucoside ABC transporter permease protein	Rhodobacterales bacterium HTCC2654 Gene: RB2654_03729: Alpha-glucoside ABC transporter permease protein	Oceanicola granulosus HTCC2516 Gene: OG2516_02429: Alpha-glucoside ABC transporter permease protein	Oceanicola batsensis HTCC2597	Loktanella vestfoldensis SKA53 Gene: SKA53_03289: Alpha-glucoside ABC transporter permease protein	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_3305: Alpha-glucoside ABC transporter permease protein	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Alpha-glucoside ABC transporter permease protein
aglA	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_1949: Alpha-glucosidase AglA	Rhodobacterales bacterium HTCC2654 Gene: RB2654_03724: Alpha-glucosidase AglA	Oceanicola granulosus HTCC2516 Gene: OG2516_02434: Alpha-glucosidase AglA	Oceanicola batsensis HTCC2597	Loktanella vestfoldensis SKA53 Gene: SKA53_03294: Alpha-glucosidase AglA	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_3304: Alpha-glucosidase AglA	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Alpha-glucosidase AglA
aglK	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2870: Alpha-glucoside ABC transporter ATP-binding protein	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_1950: Alpha-glucoside ABC transporter ATP-binding protein	Rhodobacterales bacterium HTCC2654 Gene: RB2654_03719: Alpha-glucoside ABC transporter ATP-binding protein	Oceanicola granulosus HTCC2516 Gene: OG2516_02439: Alpha-glucoside ABC transporter ATP-binding protein	Oceanicola batsensis HTCC2597	Loktanella vestfoldensis SKA53 Gene: SKA53_03299: Alpha-glucoside ABC transporter ATP-binding protein	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_3303: Alpha-glucoside ABC transporter ATP-binding protein	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Alpha-glucoside ABC transporter ATP-binding protein

CRON 2.
aglR	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	* Jannaschia sp. CCS1 Site: position = -31 score = 5.80656 sequence = AATTCCAAGCGCTTTGAAAG Site: position = -204 score = 4.90517 sequence = TTTTCAAAGCGCTTTGGGGT Gene: Jann_1945: Transcriptional regulator of alpha-glucoside utilization, LacI family	* Rhodobacterales bacterium HTCC2654 Site: position = -170 score = 5.61932 sequence = GCTCCAAACCGTTTTGGATG Gene: RB2654_03744: Transcriptional regulator of alpha-glucoside utilization, LacI family	* Oceanicola granulosus HTCC2516 Site: position = -194 score = 6.06337 sequence = GGATCAAAGCGCTTTGGACG Site: position = -28 score = 5.12366 sequence = CTCCTAAAGCGCTTTGGAAG Gene: OG2516_02414: Transcriptional regulator of alpha-glucoside utilization, LacI family	Oceanicola batsensis HTCC2597	* Loktanella vestfoldensis SKA53 Site: position = -121 score = 6.20408 sequence = GTACCAAAGCGCTTTGGATG Gene: SKA53_03274: Transcriptional regulator of alpha-glucoside utilization, LacI family	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	* Silicibacter TM1040 Site: position = -29 score = 5.08268 sequence = TTTTTAAAGCGCTTTGGAGG Site: position = -184 score = 6.3448 sequence = GATTCAAAGCGCTTTGATTG Gene: TM1040_3308: Transcriptional regulator of alpha-glucoside utilization, LacI family	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Transcriptional regulator of alpha-glucoside utilization, LacI family
RSP_2874	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_1944: Beta-glucosidase (EC 3.2.1.21)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_03749: Beta-glucosidase (EC 3.2.1.21)	Oceanicola granulosus HTCC2516	Oceanicola batsensis HTCC2597	Loktanella vestfoldensis SKA53 Gene: SKA53_03269: Beta-glucosidase (EC 3.2.1.21)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040 Gene: TM1040_3309: Beta-glucosidase (EC 3.2.1.21)	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Beta-glucosidase (EC 3.2.1.21)
glk	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1 Gene: Jann_1943: Glucokinase (EC 2.7.1.2)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_03754: Glucokinase (EC 2.7.1.2)	Oceanicola granulosus HTCC2516 Gene: OG2516_02409: Glucokinase (EC 2.7.1.2)	Oceanicola batsensis HTCC2597	Loktanella vestfoldensis SKA53 Gene: SKA53_03264: Glucokinase (EC 2.7.1.2)	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Glucokinase (EC 2.7.1.2)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AglR - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --