Regulog IdnR - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	activator (repressor)
Biological process:	Idonate utilization
Effector:	L-idonate; 5-dehydro-D-gluconate
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 7 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By TF family - LacI
By effector - L-idonate
By effector - 5-dehydro-D-gluconate
By pathway - Idonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Citrobacter koseri ATCC BAA-895	3	1
Edwardsiella tarda EIB202
Enterobacter sp. 638
Erwinia amylovora ATCC 49946
Erwinia carotovora subsp. atroseptica SCRI1043
Escherichia coli str. K-12 substr. MG1655	5	2
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Photorhabdus luminescens subsp. laumondii TTO1
Proteus mirabilis HI4320
Salmonella typhimurium LT2	5	2
Serratia proteamaculans 568	3	2
Yersinia pestis KIM

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
idnK	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	* Escherichia coli str. K-12 substr. MG1655 Site: position = -119 score = 5.87062 sequence = CTATGTTACGCATAACGTGA Gene: b4268: Gluconokinase (EC 2.7.1.12)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	* Salmonella typhimurium LT2 Site: position = -119 score = 5.93303 sequence = CAATGTTACGCATAACGTGA Gene: STM4485: Gluconokinase (EC 2.7.1.12)	Serratia proteamaculans 568	Yersinia pestis KIM Gene: y1646: Gluconokinase (EC 2.7.1.12)	Gluconokinase (EC 2.7.1.12)

CRON 2.
idnD	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	* Escherichia coli str. K-12 substr. MG1655 Site: position = -117 score = 5.87062 sequence = TCACGTTATGCGTAACATAG Gene: b4267: L-idonate 5-dehydrogenase (EC 1.1.1.264)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	* Salmonella typhimurium LT2 Site: position = -117 score = 5.93303 sequence = TCACGTTATGCGTAACATTG Gene: STM4484: L-idonate 5-dehydrogenase (EC 1.1.1.264)	Serratia proteamaculans 568 Gene: Spro_3287: L-idonate 5-dehydrogenase (EC 1.1.1.264)	Yersinia pestis KIM	L-idonate 5-dehydrogenase (EC 1.1.1.264)
idnO	* Citrobacter koseri ATCC BAA-895 Site: position = -39 score = 5.29997 sequence = TACAGTTACGCGTAACAGCT Gene: CKO_02793: 5-keto-D-gluconate 5-reductase (EC 1.1.1.69)	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655 Gene: b4266: 5-keto-D-gluconate 5-reductase (EC 1.1.1.69)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2 Gene: STM4483: 5-keto-D-gluconate 5-reductase (EC 1.1.1.69)	* Serratia proteamaculans 568 Site: position = -121 score = 5.08153 sequence = TCACGTTAAAGGTAACAGCT Gene: Spro_3288: 5-keto-D-gluconate 5-reductase (EC 1.1.1.69)	Yersinia pestis KIM Gene: y1645: 5-keto-D-gluconate 5-reductase (EC 1.1.1.69)	5-keto-D-gluconate 5-reductase (EC 1.1.1.69)
idnT	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655 Gene: b4265: L-idonate, D-gluconate, 5-keto-D-gluconate transporter	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2 Gene: STM4482: L-idonate, D-gluconate, 5-keto-D-gluconate transporter	Serratia proteamaculans 568	Yersinia pestis KIM	L-idonate, D-gluconate, 5-keto-D-gluconate transporter
idnR	Citrobacter koseri ATCC BAA-895 Gene: CKO_02791: Positive regulator of L-idonate catabolism	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655 Gene: b4264: Positive regulator of L-idonate catabolism	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2 Gene: STM4481: Positive regulator of L-idonate catabolism	* Serratia proteamaculans 568 Site: position = -169 score = 5.08153 sequence = AGCTGTTACCTTTAACGTGA Gene: Spro_3289: Positive regulator of L-idonate catabolism	Yersinia pestis KIM Gene: y1650: Positive regulator of L-idonate catabolism	Positive regulator of L-idonate catabolism
CKO_02792	Citrobacter koseri ATCC BAA-895 Gene: CKO_02792: 2-ketogluconate transporter	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	Yersinia pestis KIM	2-ketogluconate transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog IdnR - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --