Regulog UxuR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Glucuronate utilization
Effector:	Aldotetraouronic acid
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

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Member of regulog collections

By taxonomy - Bacillales
By TF family - GntR/Others
By effector - Aldotetraouronic acid
By pathway - Glucuronate utilization

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16	8	3
Bacillus halodurans C-125	6	2
Bacillus licheniformis DSM 13	6	1
Bacillus pumilus SAFR-032
Bacillus subtilis subsp. subtilis str. 168
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
uxuR2	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	* Bacillus clausii KSM-K16 Site: position = -62 score = 5.7713 sequence = CTACCATATTTGTATGGTAG Gene: ABC4047: Transcriptional regulator of glucuronate utilization, GntR family	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Transcriptional regulator of glucuronate utilization, GntR family
uxuP2	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC4046: Predicted glucuronate TRAP-type transporter, periplasmic component	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Predicted glucuronate TRAP-type transporter, periplasmic component
uxuQ2	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC4045: Predicted glucuronate TRAP-type transporter, small permease component	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Predicted glucuronate TRAP-type transporter, small permease component
uxuM2	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC4044: Predicted glucuronate TRAP-type transporter, large permease component	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Predicted glucuronate TRAP-type transporter, large permease component

CRON 2.
uxuR	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	* Bacillus clausii KSM-K16 Site: position = -31 score = 5.39918 sequence = CTACCATACTAGTATAAGTA Gene: ABC0604: Transcriptional regulator of glucuronate utilization, GntR family	Bacillus halodurans C-125 Gene: BH1062: Transcriptional regulator of glucuronate utilization, GntR family	* Bacillus licheniformis DSM 13 Site: position = -44 score = 5.99049 sequence = CAGCCATACTTGTATGGTAG Gene: BLi01354: Transcriptional regulator of glucuronate utilization, GntR family	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -53 score = 4.66189 sequence = CAAGAATACAAGTAAAGTAA Gene: Pjdr2_0332: Transcriptional regulator of glucuronate utilization, GntR family	Transcriptional regulator of glucuronate utilization, GntR family
uxmD	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_017960: Predicted mannuronate dehydrogenase (EC 1.1.1.131)	Bacillus cereus ATCC 14579	* Bacillus clausii KSM-K16 Site: position = -146 score = 5.99917 sequence = CTACCACACTTGTATGGTAG Gene: ABC0630: Predicted mannuronate dehydrogenase (EC 1.1.1.131)	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi01355: Predicted mannuronate dehydrogenase (EC 1.1.1.131)	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Predicted mannuronate dehydrogenase (EC 1.1.1.131)
uxuA	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_017980: Mannonate dehydratase (EC 4.2.1.8)	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC0631: Mannonate dehydratase (EC 4.2.1.8)	* Bacillus halodurans C-125 Site: position = -45 score = 5.59622 sequence = TATGTATACTAGTATGGTTA Gene: BH1063: Mannonate dehydratase (EC 4.2.1.8)	Bacillus licheniformis DSM 13 Gene: BLi01356: Mannonate dehydratase (EC 4.2.1.8)	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_0333: Mannonate dehydratase (EC 4.2.1.8)	Mannonate dehydratase (EC 4.2.1.8)
uxuB	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_017990: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC0632: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacillus halodurans C-125 Gene: BH1067: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacillus licheniformis DSM 13 Gene: BLi01357: D-mannonate oxidoreductase (EC 1.1.1.57)	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_0334: D-mannonate oxidoreductase (EC 1.1.1.57)	D-mannonate oxidoreductase (EC 1.1.1.57)
yjmD2	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi01358: Oxidoreductase, zinc-binding dehydrogenase family (EC 1.1.1.-)	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Oxidoreductase, zinc-binding dehydrogenase family (EC 1.1.1.-)
exuT	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_018010: Hexuronate transporter	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi01359: Hexuronate transporter	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Hexuronate transporter
BH1064	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC0724: Putative aldotetraouronic acid ABC transporter, substrate-binding protein	* Bacillus halodurans C-125 Site: position = -186 score = 6.10062 sequence = CTACCATACTAGTATGATTA Gene: BH1064: Putative aldotetraouronic acid ABC transporter, substrate-binding protein	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	3 Paenibacillus sp. JDR-2 Gene: Pjdr2_0687: Putative aldotetraouronic acid ABC transporter, substrate-binding protein Gene: Pjdr2_0823: Putative aldotetraouronic acid ABC transporter, substrate-binding protein Gene: Pjdr2_0953: Putative aldotetraouronic acid ABC transporter, substrate-binding protein	Putative aldotetraouronic acid ABC transporter, substrate-binding protein
BH1065	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC0727: Putative aldotetraouronic acid ABC transporter, permease component	Bacillus halodurans C-125 Gene: BH1065: Putative aldotetraouronic acid ABC transporter, permease component	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	2 Paenibacillus sp. JDR-2 Gene: Pjdr2_0690: Putative aldotetraouronic acid ABC transporter, permease component Gene: Pjdr2_0821: Putative aldotetraouronic acid ABC transporter, permease component	Putative aldotetraouronic acid ABC transporter, permease component
BH1066	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC0728: Putative aldotetraouronic acid ABC transporter, permease component	Bacillus halodurans C-125 Gene: BH1066: Putative aldotetraouronic acid ABC transporter, permease component	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	2 Paenibacillus sp. JDR-2 Gene: Pjdr2_0691: Putative aldotetraouronic acid ABC transporter, permease component Gene: Pjdr2_0822: Putative aldotetraouronic acid ABC transporter, permease component	Putative aldotetraouronic acid ABC transporter, permease component
xynB	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125 Gene: BH1068: Beta-xylosidase	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Beta-xylosidase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog UxuR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --