Regulog PhnR - Caulobacterales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Phosphonate utilization; 2-aminoethylphosphonate utilization |
| Effector: | |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PhnR
- By taxonomy - Caulobacterales
- By TF family - GntR/Others
- By pathway - Phosphonate utilization
- By pathway - 2-aminoethylphosphonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Caulobacter crescentus CB15 | ||
| Caulobacter segnis ATCC 21756 | 11 | 3 |
| Caulobacter sp. K31 | 11 | 4 |
| Phenylobacterium zucineum HLK1 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| COG3511 |
|
*
Caulobacter segnis ATCC 21756 Site: position = -40 score = 5.99349 sequence = AATCTGGTCTATACCAAACT Gene: Cseg_3204: phospholipase C, phosphocholine-specific |
*
Caulobacter sp. K31 Site: position = -39 score = 5.88797 sequence = ATTTTGGTCTATACCAGAAT Site: position = -115 score = 3.94805 sequence = CAACTGGATCAGACCACTGA Gene: Caul_2987: phospholipase C, phosphocholine-specific |
|
phospholipase C, phosphocholine-specific |
| COG4341 |
|
Gene: Cseg_3205: Predicted HD phosphohydrolase |
Gene: Caul_2988: Predicted HD phosphohydrolase |
|
Predicted HD phosphohydrolase |
| CRON 2. | |||||
| phnR |
|
*
Caulobacter segnis ATCC 21756 Site: position = -151 score = 5.75107 sequence = AGTTTGGTATAGACCAGATT Gene: Cseg_3203: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
*
Caulobacter sp. K31 Site: position = -165 score = 6.42722 sequence = ATTCTGGTATAGACCAAAAT Gene: Caul_2986: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
|
2-aminoethylphosphonate uptake and metabolism regulator, GntR family |
| Cseg_3202 |
|
Gene: Cseg_3202: conserved membrane protein, probable transporter |
*
Caulobacter sp. K31 Site: position = -40 score = 5.35722 sequence = GATTTGGTCTAGACCAGAAC Gene: Caul_2985: conserved membrane protein, probable transporter |
|
conserved membrane protein, probable transporter |
| CRON 3. | |||||
| omp |
|
*
Caulobacter segnis ATCC 21756 Site: position = -208 score = 5.13676 sequence = GATTTGGTATAGTCCAAAAT Site: position = -37 score = 4.6371 sequence = CCACTGGTCCATACCAGAGT Gene: Cseg_3212: TonB-dependent receptor |
*
Caulobacter sp. K31 Site: position = -35 score = 5.15488 sequence = CAACTGGTTCATACCAGTTG Gene: Caul_2995: TonB-dependent receptor |
|
TonB-dependent receptor |
| Cseg_3211 |
|
Gene: Cseg_3211: hypothetical protein |
Gene: Caul_2994: hypothetical protein |
|
hypothetical protein |
| Cseg_3210 |
|
Gene: Cseg_3210: aspartyl/asparaginyl beta-hydroxylase |
Gene: Caul_2993: aspartyl/asparaginyl beta-hydroxylase |
|
aspartyl/asparaginyl beta-hydroxylase |
| Cseg_3209 |
|
Gene: Cseg_3209: TPR repeat-containing protein |
Gene: Caul_2992: TPR repeat-containing protein |
|
TPR repeat-containing protein |
| Cseg_3208 |
|
Gene: Cseg_3208: aspartyl/asparaginyl beta-hydroxylase |
Gene: Caul_2991: aspartyl/asparaginyl beta-hydroxylase |
|
aspartyl/asparaginyl beta-hydroxylase |
| Cseg_3207 |
|
Gene: Cseg_3207: FAD dependent oxidoreductase |
Gene: Caul_2990: FAD dependent oxidoreductase |
|
FAD dependent oxidoreductase |
| phnX |
|
Gene: Cseg_3206: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
Gene: Caul_2989: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
|
Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |