Regulog LiuQ - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuQ
- By taxonomy - Burkholderia
- By TF family - TetR
- By pathway - Branched-chain amino acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 5 | 2 |
| Burkholderia mallei ATCC 23344 | 5 | 2 |
| Burkholderia sp. 383 | 5 | 2 |
| Burkholderia cepacia AMMD | 5 | 2 |
| Burkholderia vietnamiensis G4 | 5 | 2 |
| Burkholderia glumae BGR1 | 5 | 2 |
| Burkholderia xenovorans LB400 | 9 | 4 |
| Burkholderia phymatum STM815 | 5 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| liuQ |
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Burkholderia pseudomallei K96243 Site: position = -167 score = 5.21909 sequence = TTGAGTCTTGCTCAA Site: position = -67 score = 5.30739 sequence = TTGAGCGACACTCAG Gene: BPSS1449: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family |
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Burkholderia mallei ATCC 23344 Site: position = -167 score = 5.21909 sequence = TTGAGTCTTGCTCAA Site: position = -67 score = 5.26551 sequence = TTGAGCAACACTCAG Gene: BMAA0801: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family |
*
Burkholderia sp. 383 Site: position = -129 score = 5.23039 sequence = CTGAGTTTCGCTCAA Site: position = -28 score = 5.40562 sequence = TTGAGTGACACTCAG Gene: Bcep18194_B0422: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family |
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Burkholderia cepacia AMMD Site: position = -28 score = 5.36374 sequence = TTGAGTGATACTCAG Site: position = -130 score = 5.23039 sequence = CTGAGTTTCGCTCAA Gene: Bamb_4589: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family |
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Burkholderia vietnamiensis G4 Site: position = -131 score = 5.23039 sequence = CTGAGTTTCGCTCAA Site: position = -29 score = 5.40562 sequence = TTGAGTGACACTCAG Gene: Bcep1808_3496: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family |
*
Burkholderia glumae BGR1 Site: position = -175 score = 5.01185 sequence = CTGAGTTTTGCTCAG Site: position = -74 score = 5.58227 sequence = TTGAGTGACACTCAA Gene: bglu_2g11310: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family |
*2
Burkholderia xenovorans LB400 Site: position = -126 score = 5.36374 sequence = TTGAGTATCACTCAG Gene: Bxe_B0959: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family Site: position = -136 score = 4.95288 sequence = TTGAGTTTAGCTCAT Site: position = -50 score = 5.18397 sequence = TTGAGCTAGACTCAA Gene: Bxe_A1393: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family |
*
Burkholderia phymatum STM815 Site: position = -104 score = 5.58227 sequence = TTGAGTGTCACTCAA Gene: Bphy_3563: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family |
Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family |
| CRON 2. | |||||||||
| liuA |
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Burkholderia pseudomallei K96243 Site: position = -155 score = 5.30739 sequence = CTGAGTGTCGCTCAA Site: position = -55 score = 5.21909 sequence = TTGAGCAAGACTCAA Gene: BPSS1448: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Burkholderia mallei ATCC 23344 Site: position = -155 score = 5.26551 sequence = CTGAGTGTTGCTCAA Site: position = -55 score = 5.21909 sequence = TTGAGCAAGACTCAA Gene: BMAA0802: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Burkholderia sp. 383 Site: position = -94 score = 5.40562 sequence = CTGAGTGTCACTCAA Site: position = 7 score = 5.23039 sequence = TTGAGCGAAACTCAG Gene: Bcep18194_B0423: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Burkholderia cepacia AMMD Site: position = -158 score = 5.36374 sequence = CTGAGTATCACTCAA Site: position = -56 score = 5.23039 sequence = TTGAGCGAAACTCAG Gene: Bamb_4588: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Burkholderia vietnamiensis G4 Site: position = -156 score = 5.40562 sequence = CTGAGTGTCACTCAA Site: position = -54 score = 5.23039 sequence = TTGAGCGAAACTCAG Gene: Bcep1808_3495: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Burkholderia glumae BGR1 Site: position = -172 score = 5.58227 sequence = TTGAGTGTCACTCAA Site: position = -71 score = 5.01185 sequence = CTGAGCAAAACTCAG Gene: bglu_2g11300: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Burkholderia xenovorans LB400 Site: position = -186 score = 5.36374 sequence = CTGAGTGATACTCAA Gene: Bxe_B0960: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Burkholderia phymatum STM815 Site: position = -210 score = 5.58227 sequence = TTGAGTGACACTCAA Gene: Bphy_3562: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| liuB |
Gene: BPSS1447: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: BMAA0803: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Bcep18194_B0424: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Bamb_4587: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Bcep1808_3494: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: bglu_2g11290: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Bxe_B0961: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Bphy_3561: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
| liuC |
Gene: BPSS1446: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: BMAA0804: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Bcep18194_B0425: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Bamb_4586: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Bcep1808_3493: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: bglu_2g11280: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Bxe_B0962: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Bphy_3560: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
| liuD |
Gene: BPSS1445: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: BMAA0805: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Bcep18194_B0426: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Bamb_4585: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Bcep1808_3492: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: bglu_2g11270: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Bxe_B0963: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Bphy_3559: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
| CRON 3. | |||||||||
| atuB |
Gene: BPSS2030: Short-chain dehydrogenase/reductase SDR |
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Burkholderia xenovorans LB400 Site: position = -139 score = 5.18397 sequence = TTGAGTCTAGCTCAA Site: position = -53 score = 4.95288 sequence = ATGAGCTAAACTCAA Gene: Bxe_A1394: Short-chain dehydrogenase/reductase SDR |
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Short-chain dehydrogenase/reductase SDR |
| acsA |
Gene: BPSL1380: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
Gene: BMA0802: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
Gene: Bcep18194_A4459: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
Gene: Bamb_1201: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
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Gene: bglu_1g11900: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
Gene: Bxe_A1395: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
Gene: Bphy_1850: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
| Bxe_A1396 |
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Gene: Bxe_A1396: Transcriptional regulator, AsnC family |
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Transcriptional regulator, AsnC family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |