Regulog RutR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - RutR
- By taxonomy - Burkholderia
- By TF family - TetR
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 1 | 1 |
| Burkholderia mallei ATCC 23344 | 1 | 1 |
| Burkholderia sp. 383 | 6 | 2 |
| Burkholderia cepacia AMMD | 6 | 2 |
| Burkholderia vietnamiensis G4 | 6 | 2 |
| Burkholderia glumae BGR1 | ||
| Burkholderia xenovorans LB400 | 6 | 2 |
| Burkholderia phymatum STM815 | 6 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| rutR |
*
Burkholderia pseudomallei K96243 Site: position = -160 score = 6.65327 sequence = TCCTGTCCGAATGGTCAGGT Gene: BPSS0273: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
*
Burkholderia mallei ATCC 23344 Site: position = -171 score = 6.65327 sequence = TCCTGTCCGAATGGTCAGGT Gene: BMAA1492: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
*
Burkholderia sp. 383 Site: position = -196 score = 7.04496 sequence = TCCTGTCCGATTGGACAGGT Gene: Bcep18194_C6653: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
*
Burkholderia cepacia AMMD Site: position = -195 score = 7.04496 sequence = TCCTGTCCGATTGGACAGGT Gene: Bamb_5968: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
*
Burkholderia vietnamiensis G4 Site: position = -195 score = 7.04496 sequence = TCCTGTCCGATTGGACAGGT Gene: Bcep1808_5508: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
|
*
Burkholderia xenovorans LB400 Site: position = -121 score = 6.71734 sequence = TCCTGTCCAGTTGGACAGGT Gene: Bxe_A1426: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
*
Burkholderia phymatum STM815 Site: position = -216 score = 6.89527 sequence = TCCTGTCCGAATGGACAGGT Gene: Bphy_1537: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
| CRON 2. | |||||||||
| pydC |
|
|
*
Burkholderia sp. 383 Site: position = -180 score = 6.8329 sequence = ACCTGTCCAATCGGACAGGA Gene: Bcep18194_C6654: Beta-ureidopropionase (EC 3.5.1.6) |
*
Burkholderia cepacia AMMD Site: position = -188 score = 6.8329 sequence = ACCTGTCCAATCGGACAGGA Gene: Bamb_5967: Beta-ureidopropionase (EC 3.5.1.6) |
*
Burkholderia vietnamiensis G4 Site: position = -186 score = 6.8329 sequence = ACCTGTCCAATCGGACAGGA Gene: Bcep1808_5509: Beta-ureidopropionase (EC 3.5.1.6) |
|
*
Burkholderia xenovorans LB400 Site: position = -168 score = 6.64833 sequence = ACCTGTCCAACTGGACAGGA Gene: Bxe_A1427: Beta-ureidopropionase (EC 3.5.1.6) |
*
Burkholderia phymatum STM815 Site: position = -200 score = 6.50528 sequence = ACCTGTCCATTCGGACAGGA Gene: Bphy_1536: Beta-ureidopropionase (EC 3.5.1.6) |
Beta-ureidopropionase (EC 3.5.1.6) |
| pydX |
|
|
Gene: Bcep18194_C6655: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism |
Gene: Bamb_5966: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism |
Gene: Bcep1808_5510: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism |
|
Gene: Bxe_A1428: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism |
Gene: Bphy_1535: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism |
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism |
| pydA |
|
|
Gene: Bcep18194_C6656: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2); Dihydroorotate dehydrogenase (EC 1.3.3.1) |
Gene: Bamb_5965: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2); Dihydroorotate dehydrogenase (EC 1.3.3.1) |
Gene: Bcep1808_5511: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2); Dihydroorotate dehydrogenase (EC 1.3.3.1) |
|
Gene: Bxe_A1429: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2); Dihydroorotate dehydrogenase (EC 1.3.3.1) |
Gene: Bphy_1534: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2); Dihydroorotate dehydrogenase (EC 1.3.3.1) |
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2); Dihydroorotate dehydrogenase (EC 1.3.3.1) |
| pydP |
|
|
Gene: Bcep18194_C6657: Pyrimidine permease in reductive pathway |
Gene: Bamb_5964: Pyrimidine permease in reductive pathway |
Gene: Bcep1808_5512: Pyrimidine permease in reductive pathway |
|
Gene: Bxe_A1430: Pyrimidine permease in reductive pathway |
Gene: Bphy_1533: Pyrimidine permease in reductive pathway |
Pyrimidine permease in reductive pathway |
| pydB |
|
|
Gene: Bcep18194_C6658: Dihydropyrimidinase (EC 3.5.2.2) |
Gene: Bamb_5963: Dihydropyrimidinase (EC 3.5.2.2) |
Gene: Bcep1808_5513: Dihydropyrimidinase (EC 3.5.2.2) |
|
Gene: Bxe_A1431: Dihydropyrimidinase (EC 3.5.2.2) |
Gene: Bphy_1532: Dihydropyrimidinase (EC 3.5.2.2) |
Dihydropyrimidinase (EC 3.5.2.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |