Regulog LiuR - Caulobacterales
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Caulobacterales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Caulobacter crescentus CB15 | 8 | 2 |
| Caulobacter segnis ATCC 21756 | 7 | 2 |
| Caulobacter sp. K31 | 9 | 3 |
| Phenylobacterium zucineum HLK1 | 5 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| liuR |
*
Caulobacter crescentus CB15 Site: position = -108 score = 5.14201 sequence = GTTTACGTAAGCGTTGAC Site: position = -114 score = 5.6187 sequence = GTTGACGTTTACGTAAGC Gene: CC0081: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Caulobacter segnis ATCC 21756 Site: position = -107 score = 5.14201 sequence = GTTTACGTAAGCGTTGAC Site: position = -113 score = 5.19804 sequence = ATTGACGTTTACGTAAGC Gene: Cseg_0076: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Caulobacter sp. K31 Site: position = -101 score = 5.14201 sequence = GTTTACGTAAGCGTTGAC Site: position = -107 score = 5.6187 sequence = GTTGACGTTTACGTAAGC Gene: Caul_0132: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*2
Phenylobacterium zucineum HLK1 Site: position = -64 score = 4.88569 sequence = CTTGACGTAAACGGAAAG Gene: PHZ_c3353: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Gene: PHZ_c2019: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
| acdH |
Gene: CC0080: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Cseg_0075: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Caul_0131: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: PHZ_c3354: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Acyl-CoA dehydrogenase (EC 1.3.99.3) |
| acdL |
Gene: CC0079: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
Gene: Cseg_0074: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
Gene: Caul_0130: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
|
Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
| CC0078 |
Gene: CC0078: hypothetical protein |
Gene: Cseg_0073: hypothetical protein |
Gene: Caul_0128: hypothetical protein |
|
hypothetical protein |
| acdA |
Gene: CC0077: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Cseg_0072: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Caul_0126: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| acdB |
Gene: CC0076: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
|
Gene: Caul_0125: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
|
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
| Caul_0129 |
|
|
Gene: Caul_0129: hypothetical protein |
|
hypothetical protein |
| PHZ_c3355 |
|
|
|
Gene: PHZ_c3355: predicted redox protein, regulator of disulfide bond formation |
predicted redox protein, regulator of disulfide bond formation |
| CRON 2. | |||||
| acdL2 |
*
Caulobacter crescentus CB15 Site: position = -105 score = 5.56069 sequence = GTTGACGCTAACGTCATC Gene: CC1310: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
*
Caulobacter segnis ATCC 21756 Site: position = -106 score = 5.56069 sequence = GTTGACGCTAACGTCATC Gene: Cseg_1597: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
*
Caulobacter sp. K31 Site: position = -101 score = 5.10474 sequence = GTTGACGCTAAGGTCATC Site: position = -107 score = 4.42325 sequence = GTTTACGTTGACGCTAAG Gene: Caul_2048: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
*
Phenylobacterium zucineum HLK1 Site: position = -94 score = 5.11343 sequence = GTTTACGTTGACGTTAGC Site: position = -88 score = 5.56069 sequence = GTTGACGTTAGCGTCATC Gene: PHZ_c2336: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
| acdH2 |
Gene: CC1311: Acyl-CoA dehydrogenase family protein |
Gene: Cseg_1598: Acyl-CoA dehydrogenase family protein |
Gene: Caul_2049: Acyl-CoA dehydrogenase family protein |
Gene: PHZ_c2335: Acyl-CoA dehydrogenase family protein |
Acyl-CoA dehydrogenase family protein |
| CRON 3. | |||||
| etfB |
Gene: CC0727: Electron transfer flavoprotein, beta subunit |
Gene: Cseg_3663: Electron transfer flavoprotein, beta subunit |
*
Caulobacter sp. K31 Site: position = -97 score = 4.9505 sequence = CCTTACGCTTACGTCAGG Gene: Caul_1047: Electron transfer flavoprotein, beta subunit |
Gene: PHZ_c3150: Electron transfer flavoprotein, beta subunit |
Electron transfer flavoprotein, beta subunit |
| etfA |
Gene: CC0726: Electron transfer flavoprotein, alpha subunit |
Gene: Cseg_3664: Electron transfer flavoprotein, alpha subunit |
Gene: Caul_1046: Electron transfer flavoprotein, alpha subunit |
Gene: PHZ_c3151: Electron transfer flavoprotein, alpha subunit |
Electron transfer flavoprotein, alpha subunit |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |