Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog LiuR - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia pseudomallei K96243
Burkholderia mallei ATCC 23344
Burkholderia sp. 383
Burkholderia cepacia AMMD
Burkholderia vietnamiensis G4
Burkholderia glumae BGR1
Burkholderia xenovorans LB400 12 3
Burkholderia phymatum STM815 12 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
liuR
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
*
Burkholderia xenovorans LB400

Site:
position = -68
score = 5.99799
sequence = GTTGACGATAACGTAAAC

Gene: Bxe_A4252: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Burkholderia phymatum STM815

Site:
position = -101
score = 5.99799
sequence = GTTGACGATAACGTAAAC

Gene: Bphy_0181: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
aceK
 
Burkholderia pseudomallei K96243

Gene: BPSL0373: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Burkholderia mallei ATCC 23344

Gene: BMA0094: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Burkholderia sp. 383

Gene: Bcep18194_A6269: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Burkholderia cepacia AMMD

Gene: Bamb_2975: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3021: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Burkholderia glumae BGR1

Gene: bglu_1g32370: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Burkholderia xenovorans LB400

Gene: Bxe_A4253: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
 
Burkholderia phymatum STM815

Gene: Bphy_0180: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
cah
 
Burkholderia pseudomallei K96243

Gene: BPSL0372: Carbonic anhydrase (EC 4.2.1.1)
 
Burkholderia mallei ATCC 23344

Gene: BMA0095: Carbonic anhydrase (EC 4.2.1.1)
 
Burkholderia sp. 383

Gene: Bcep18194_A6270: Carbonic anhydrase (EC 4.2.1.1)
 
Burkholderia cepacia AMMD

Gene: Bamb_2976: Carbonic anhydrase (EC 4.2.1.1)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3022: Carbonic anhydrase (EC 4.2.1.1)
 
Burkholderia glumae BGR1

Gene: bglu_1g32380: Carbonic anhydrase (EC 4.2.1.1)
 
Burkholderia xenovorans LB400

Gene: Bxe_A4254: Carbonic anhydrase (EC 4.2.1.1)
 
Burkholderia phymatum STM815

Gene: Bphy_0179: Carbonic anhydrase (EC 4.2.1.1)
Carbonic anhydrase (EC 4.2.1.1)
ivdA
 
Burkholderia pseudomallei K96243

Gene: BPSL0371: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Burkholderia mallei ATCC 23344

Gene: BMA0096: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1

Gene: bglu_1g32390: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Burkholderia xenovorans LB400

Gene: Bxe_A4255: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
 
Burkholderia phymatum STM815

Gene: Bphy_0178: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Bxe_A4256
 
Burkholderia pseudomallei K96243

Gene: BPSL0370: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Burkholderia mallei ATCC 23344

Gene: BMA0097: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Burkholderia sp. 383

Gene: Bcep18194_A6271: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Burkholderia cepacia AMMD

Gene: Bamb_2977: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3023: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Burkholderia glumae BGR1

Gene: bglu_1g32400: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Burkholderia xenovorans LB400

Gene: Bxe_A4256: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Burkholderia phymatum STM815

Gene: Bphy_0177: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
ivdC
 
Burkholderia pseudomallei K96243
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4
 
Burkholderia glumae BGR1
 
Burkholderia xenovorans LB400

Gene: Bxe_A4257: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Burkholderia phymatum STM815

Gene: Bphy_0176: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Bxe_A4258
 
Burkholderia pseudomallei K96243

Gene: BPSL0369: hypothetical protein
 
Burkholderia mallei ATCC 23344

Gene: BMA0098: hypothetical protein
 
Burkholderia sp. 383

Gene: Bcep18194_A6272: hypothetical protein
 
Burkholderia cepacia AMMD

Gene: Bamb_2978: hypothetical protein
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3024: hypothetical protein
 
Burkholderia glumae BGR1

Gene: bglu_1g32410: hypothetical protein
 
Burkholderia xenovorans LB400

Gene: Bxe_A4258: hypothetical protein
 
Burkholderia phymatum STM815

Gene: Bphy_0175: hypothetical protein
hypothetical protein
 
CRON 2.
liuA
 
Burkholderia pseudomallei K96243

Gene: BPSS1448: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Burkholderia mallei ATCC 23344

Gene: BMAA0802: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Burkholderia sp. 383

Gene: Bcep18194_B0423: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Burkholderia cepacia AMMD

Gene: Bamb_4588: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3495: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Burkholderia glumae BGR1

Gene: bglu_2g11300: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Burkholderia xenovorans LB400

Site:
position = -163
score = 6.08306
sequence = ATTGACGCTTACGTAAAT

Gene: Bxe_B0960: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Burkholderia phymatum STM815

Site:
position = -187
score = 5.57754
sequence = ATTGACGCATACGTCAAT

Gene: Bphy_3562: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
liuB
 
Burkholderia pseudomallei K96243

Gene: BPSS1447: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia mallei ATCC 23344

Gene: BMAA0803: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia sp. 383

Gene: Bcep18194_B0424: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia cepacia AMMD

Gene: Bamb_4587: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3494: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia glumae BGR1

Gene: bglu_2g11290: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia xenovorans LB400

Gene: Bxe_B0961: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Burkholderia phymatum STM815

Gene: Bphy_3561: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
liuC
 
Burkholderia pseudomallei K96243

Gene: BPSS1446: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia mallei ATCC 23344

Gene: BMAA0804: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia sp. 383

Gene: Bcep18194_B0425: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia cepacia AMMD

Gene: Bamb_4586: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3493: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia glumae BGR1

Gene: bglu_2g11280: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia xenovorans LB400

Gene: Bxe_B0962: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Burkholderia phymatum STM815

Gene: Bphy_3560: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuD
 
Burkholderia pseudomallei K96243

Gene: BPSS1445: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia mallei ATCC 23344

Gene: BMAA0805: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia sp. 383

Gene: Bcep18194_B0426: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia cepacia AMMD

Gene: Bamb_4585: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_3492: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia glumae BGR1

Gene: bglu_2g11270: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia xenovorans LB400

Gene: Bxe_B0963: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Burkholderia phymatum STM815

Gene: Bphy_3559: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
CRON 3.
aacS
 
Burkholderia pseudomallei K96243

Gene: BPSL3394: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
 
Burkholderia mallei ATCC 23344

Gene: BMA2959: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
 
Burkholderia sp. 383

Gene: Bcep18194_A3290: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
 
Burkholderia cepacia AMMD

Gene: Bamb_0099: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_0117: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
 
Burkholderia glumae BGR1

Gene: bglu_1g00790: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
*
Burkholderia xenovorans LB400

Site:
position = -176
score = 5.38449
sequence = CTTGACGTTTACGGAAAG

Gene: Bxe_A0042: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
*
Burkholderia phymatum STM815

Site:
position = -153
score = 5.38449
sequence = CTTGACGTTTACGGAAAG

Gene: Bphy_3025: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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