Regulog LiuR - Psychromonadaceae/Aeromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 20 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Psychromonadaceae/Aeromonadales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Psychromonas ingrahamii 37
Psychromonas sp. CNPT3
Moritella sp. PE36
Aeromonas hydrophila subsp. hydrophila ATCC 7966	23	7
Aeromonas salmonicida subsp. salmonicida A449	22	7
Tolumonas auensis DSM 9187

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
ivdA	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -89 score = 5.02754 sequence = CCTTACCCAAACGTCAAC Gene: AHA_2143: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -89 score = 5.02754 sequence = CCTTACCCAAACGTCAAC Gene: ASA_2159: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	Tolumonas auensis DSM 9187	3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)

CRON 2.
prpB	Psychromonas ingrahamii 37 Gene: Ping_1869: Methylisocitrate lyase (EC 4.1.3.30)	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_01055: Methylisocitrate lyase (EC 4.1.3.30)	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -60 score = 5.76419 sequence = ATTGACGTTAACGTAAAC Site: position = -54 score = 4.56075 sequence = GTTAACGTAAACGTGATA Gene: AHA_2265: Methylisocitrate lyase (EC 4.1.3.30)	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -54 score = 4.56075 sequence = GTTAACGTAAACGTGATA Site: position = -60 score = 5.76419 sequence = ATTGACGTTAACGTAAAC Gene: ASA_2041: Methylisocitrate lyase (EC 4.1.3.30)	Tolumonas auensis DSM 9187	Methylisocitrate lyase (EC 4.1.3.30)
prpC	Psychromonas ingrahamii 37 Gene: Ping_1868: 2-methylcitrate synthase (EC 2.3.3.5)	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_01050: 2-methylcitrate synthase (EC 2.3.3.5)	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2266: 2-methylcitrate synthase (EC 2.3.3.5)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_2040: 2-methylcitrate synthase (EC 2.3.3.5)	Tolumonas auensis DSM 9187	2-methylcitrate synthase (EC 2.3.3.5)
prpD	Psychromonas ingrahamii 37 Gene: Ping_1572: 2-methylcitrate dehydratase (EC 4.2.1.79)	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2267: 2-methylcitrate dehydratase (EC 4.2.1.79)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_2039: 2-methylcitrate dehydratase (EC 4.2.1.79)	Tolumonas auensis DSM 9187	2-methylcitrate dehydratase (EC 4.2.1.79)

CRON 3.
ivdB	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -159 score = 6.17952 sequence = GTTTACGTTAGCGTAAAC Site: position = -153 score = 4.75085 sequence = GTTAGCGTAAACGTAAAT Gene: AHA_2079: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -158 score = 6.17952 sequence = GTTTACGTTAGCGTAAAC Site: position = -152 score = 4.75085 sequence = GTTAGCGTAAACGTAAAT Gene: ASA_1913: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	Tolumonas auensis DSM 9187	Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
ivdC	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2080: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1914: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	Tolumonas auensis DSM 9187	Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
ivdD	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2081: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1915: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)	Tolumonas auensis DSM 9187	3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
ivdE	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2082: Enoyl-CoA hydratase/isomerase family protein	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1916: Enoyl-CoA hydratase/isomerase family protein	Tolumonas auensis DSM 9187	Enoyl-CoA hydratase/isomerase family protein
ivdF	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2083: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1917: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	Tolumonas auensis DSM 9187	3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
ivdG	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2084: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1918: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Tolumonas auensis DSM 9187	3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)

CRON 4.
liuA	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_13674: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -111 score = 4.75085 sequence = ATTTACGTTTACGCTAAC Site: position = -105 score = 6.17952 sequence = GTTTACGCTAACGTAAAC Gene: AHA_2078: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -118 score = 4.75085 sequence = ATTTACGTTTACGCTAAC Site: position = -112 score = 6.17952 sequence = GTTTACGCTAACGTAAAC Gene: ASA_1912: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	Tolumonas auensis DSM 9187	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
liuB	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_13679: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2077: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1911: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Tolumonas auensis DSM 9187	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
liuC	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_13689: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2076: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1910: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Tolumonas auensis DSM 9187	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuD	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	2 Moritella sp. PE36 Gene: PE36_13694: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) Gene: PE36_13699: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2075: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1909: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Tolumonas auensis DSM 9187	Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuE	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_13704: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2074: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1908: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Tolumonas auensis DSM 9187	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
liuR	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	2 Aeromonas hydrophila subsp. hydrophila ATCC 7966* Gene: AHA_2073: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Site: position = -17 score = 5.02754 sequence = GTTGACGTTTGGGTAAGG Gene: AHA_2141: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	2 Aeromonas salmonicida subsp. salmonicida A449* Gene: ASA_1907: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Site: position = -61 score = 5.02754 sequence = GTTGACGTTTGGGTAAGG Gene: ASA_2160: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	Tolumonas auensis DSM 9187	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
ASA_1906	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2072: Periplasmic binding protein	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1906: Periplasmic binding protein	Tolumonas auensis DSM 9187	Periplasmic binding protein
ASA_1905	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_13092: hypothetical protein	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2071: hypothetical protein	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1905: hypothetical protein	Tolumonas auensis DSM 9187	hypothetical protein

CRON 5.
etfD	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_13919: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	2 Aeromonas hydrophila subsp. hydrophila ATCC 7966* Site: position = -58 score = 6.33972 sequence = CTTTACGTTTACGTAAAC Gene: AHA_1975: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Gene: AHA_1974: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -58 score = 6.33972 sequence = CTTTACGTTTACGTAAAC Gene: ASA_1855: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Tolumonas auensis DSM 9187	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

CRON 6.
etfB	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -75 score = 6.33972 sequence = GTTTACGTAAACGTAAAG Gene: AHA_1976: Electron transfer flavoprotein, beta subunit	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -86 score = 6.33972 sequence = GTTTACGTAAACGTAAAG Gene: ASA_1856: Electron transfer flavoprotein, beta subunit	Tolumonas auensis DSM 9187	Electron transfer flavoprotein, beta subunit
etfA	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_1977: Electron transfer flavoprotein, alpha subunit	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1857: Electron transfer flavoprotein, alpha subunit	Tolumonas auensis DSM 9187	Electron transfer flavoprotein, alpha subunit

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LiuR - Psychromonadaceae/Aeromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --