Regulog LiuR - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Psychromonadaceae/Aeromonadales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | ||
| Psychromonas sp. CNPT3 | ||
| Moritella sp. PE36 | ||
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 23 | 7 |
| Aeromonas salmonicida subsp. salmonicida A449 | 22 | 7 |
| Tolumonas auensis DSM 9187 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| ivdA |
|
|
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -89 score = 5.02754 sequence = CCTTACCCAAACGTCAAC Gene: AHA_2143: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -89 score = 5.02754 sequence = CCTTACCCAAACGTCAAC Gene: ASA_2159: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
|
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
| CRON 2. | |||||||
| prpB |
Gene: Ping_1869: Methylisocitrate lyase (EC 4.1.3.30) |
|
Gene: PE36_01055: Methylisocitrate lyase (EC 4.1.3.30) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -60 score = 5.76419 sequence = ATTGACGTTAACGTAAAC Site: position = -54 score = 4.56075 sequence = GTTAACGTAAACGTGATA Gene: AHA_2265: Methylisocitrate lyase (EC 4.1.3.30) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -54 score = 4.56075 sequence = GTTAACGTAAACGTGATA Site: position = -60 score = 5.76419 sequence = ATTGACGTTAACGTAAAC Gene: ASA_2041: Methylisocitrate lyase (EC 4.1.3.30) |
|
Methylisocitrate lyase (EC 4.1.3.30) |
| prpC |
Gene: Ping_1868: 2-methylcitrate synthase (EC 2.3.3.5) |
|
Gene: PE36_01050: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: AHA_2266: 2-methylcitrate synthase (EC 2.3.3.5) |
Gene: ASA_2040: 2-methylcitrate synthase (EC 2.3.3.5) |
|
2-methylcitrate synthase (EC 2.3.3.5) |
| prpD |
Gene: Ping_1572: 2-methylcitrate dehydratase (EC 4.2.1.79) |
|
|
Gene: AHA_2267: 2-methylcitrate dehydratase (EC 4.2.1.79) |
Gene: ASA_2039: 2-methylcitrate dehydratase (EC 4.2.1.79) |
|
2-methylcitrate dehydratase (EC 4.2.1.79) |
| CRON 3. | |||||||
| ivdB |
|
|
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -159 score = 6.17952 sequence = GTTTACGTTAGCGTAAAC Site: position = -153 score = 4.75085 sequence = GTTAGCGTAAACGTAAAT Gene: AHA_2079: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -158 score = 6.17952 sequence = GTTTACGTTAGCGTAAAC Site: position = -152 score = 4.75085 sequence = GTTAGCGTAAACGTAAAT Gene: ASA_1913: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
|
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
| ivdC |
|
|
|
Gene: AHA_2080: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: ASA_1914: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
|
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
| ivdD |
|
|
|
Gene: AHA_2081: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: ASA_1915: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
|
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
| ivdE |
|
|
|
Gene: AHA_2082: Enoyl-CoA hydratase/isomerase family protein |
Gene: ASA_1916: Enoyl-CoA hydratase/isomerase family protein |
|
Enoyl-CoA hydratase/isomerase family protein |
| ivdF |
|
|
|
Gene: AHA_2083: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: ASA_1917: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
|
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
| ivdG |
|
|
|
Gene: AHA_2084: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: ASA_1918: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
|
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
| CRON 4. | |||||||
| liuA |
|
|
Gene: PE36_13674: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -111 score = 4.75085 sequence = ATTTACGTTTACGCTAAC Site: position = -105 score = 6.17952 sequence = GTTTACGCTAACGTAAAC Gene: AHA_2078: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -118 score = 4.75085 sequence = ATTTACGTTTACGCTAAC Site: position = -112 score = 6.17952 sequence = GTTTACGCTAACGTAAAC Gene: ASA_1912: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
|
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
| liuB |
|
|
Gene: PE36_13679: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: AHA_2077: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: ASA_1911: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
|
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
| liuC |
|
|
Gene: PE36_13689: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: AHA_2076: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: ASA_1910: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
|
Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
| liuD |
|
|
2
Moritella sp. PE36 Gene: PE36_13694: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) Gene: PE36_13699: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: AHA_2075: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: ASA_1909: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
|
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
| liuE |
|
|
Gene: PE36_13704: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: AHA_2074: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: ASA_1908: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
|
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
| liuR |
|
|
|
*2
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2073: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Site: position = -17 score = 5.02754 sequence = GTTGACGTTTGGGTAAGG Gene: AHA_2141: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*2
Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_1907: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Site: position = -61 score = 5.02754 sequence = GTTGACGTTTGGGTAAGG Gene: ASA_2160: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
|
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
| ASA_1906 |
|
|
|
Gene: AHA_2072: Periplasmic binding protein |
Gene: ASA_1906: Periplasmic binding protein |
|
Periplasmic binding protein |
| ASA_1905 |
|
|
Gene: PE36_13092: hypothetical protein |
Gene: AHA_2071: hypothetical protein |
Gene: ASA_1905: hypothetical protein |
|
hypothetical protein |
| CRON 5. | |||||||
| etfD |
|
|
Gene: PE36_13919: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*2
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -58 score = 6.33972 sequence = CTTTACGTTTACGTAAAC Gene: AHA_1975: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Gene: AHA_1974: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -58 score = 6.33972 sequence = CTTTACGTTTACGTAAAC Gene: ASA_1855: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
|
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
| CRON 6. | |||||||
| etfB |
|
|
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -75 score = 6.33972 sequence = GTTTACGTAAACGTAAAG Gene: AHA_1976: Electron transfer flavoprotein, beta subunit |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -86 score = 6.33972 sequence = GTTTACGTAAACGTAAAG Gene: ASA_1856: Electron transfer flavoprotein, beta subunit |
|
Electron transfer flavoprotein, beta subunit |
| etfA |
|
|
|
Gene: AHA_1977: Electron transfer flavoprotein, alpha subunit |
Gene: ASA_1857: Electron transfer flavoprotein, alpha subunit |
|
Electron transfer flavoprotein, alpha subunit |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |