Regulon of LiuR in Aeromonas salmonicida subsp. salmonicida A449
| Regulator type: | Transcription factor |
| TF locus tag: | ASA_2160, ASA_1907 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Psychromonadaceae/Aeromonadales |
| Statistics of regulated genes: | |
| - Genes | 22 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Psychromonadaceae/Aeromonadales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -89
Score: 5 Sequence: CCTTACCCAAACGTCAAC
Locus tag: ASA_2159
Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
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ivdA
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3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
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Position: -60
Score: 5.8 Sequence: ATTGACGTTAACGTAAAC
Position: -54
Score: 4.6 Sequence: GTTAACGTAAACGTGATA
Locus tag: ASA_2041
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: ASA_2040
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: ASA_2039
Name: prpD Funciton: 2-methylcitrate dehydratase (EC 4.2.1.79) |
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prpB
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Methylisocitrate lyase (EC 4.1.3.30)
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prpC
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2-methylcitrate synthase (EC 2.3.3.5)
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prpD
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2-methylcitrate dehydratase (EC 4.2.1.79)
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Position: -158
Score: 6.2 Sequence: GTTTACGTTAGCGTAAAC
Position: -152
Score: 4.8 Sequence: GTTAGCGTAAACGTAAAT
Locus tag: ASA_1913
Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: ASA_1914
Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: ASA_1915
Name: ivdD Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: ASA_1916
Name: ivdE Funciton: Enoyl-CoA hydratase/isomerase family protein
Locus tag: ASA_1917
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: ASA_1918
Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
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ivdB
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Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
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ivdC
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Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
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ivdD
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3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
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ivdE
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Enoyl-CoA hydratase/isomerase family protein
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ivdF
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3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
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ivdG
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3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
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Position: -86
Score: 6.3 Sequence: GTTTACGTAAACGTAAAG
Locus tag: ASA_1856
Name: etfB Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: ASA_1857
Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit |
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etfB
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Electron transfer flavoprotein, beta subunit
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etfA
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Electron transfer flavoprotein, alpha subunit
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Position: -58
Score: 6.3 Sequence: CTTTACGTTTACGTAAAC
Locus tag: ASA_1855
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Position: -118
Score: 4.8 Sequence: ATTTACGTTTACGCTAAC
Position: -112
Score: 6.2 Sequence: GTTTACGCTAACGTAAAC
Locus tag: ASA_1912
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: ASA_1911
Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: ASA_1910
Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: ASA_1909
Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: ASA_1908
Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: ASA_1907
Name: liuR1 Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: ASA_1906
Name: null Funciton: Periplasmic binding protein
Locus tag: ASA_1905
Name: null Funciton: hypothetical protein |
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liuA
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Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
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liuB
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Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
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liuC
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Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
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liuD
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Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
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liuE
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Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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liuR1
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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Periplasmic binding protein
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hypothetical protein
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Position: -61
Score: 5 Sequence: GTTGACGTTTGGGTAAGG
Locus tag: ASA_2160
Name: liuR2 Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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liuR2
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |