Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Aeromonas hydrophila subsp. hydrophila ATCC 7966

Properties
Regulator type: Transcription factor
TF locus tag: AHA_2073, AHA_2141
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Psychromonadaceae/Aeromonadales
Statistics of regulated genes:
- Genes 23
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 20 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -89
Score: 5
Sequence: CCTTACCCAAACGTCAAC
Locus tag: AHA_2143
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
AHA_2143
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Position: -60
Score: 5.8
Sequence: ATTGACGTTAACGTAAAC
Position: -54
Score: 4.6
Sequence: GTTAACGTAAACGTGATA
Locus tag: AHA_2265
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: AHA_2266
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: AHA_2267
Name: prpD
Funciton: 2-methylcitrate dehydratase (EC 4.2.1.79)
AHA_2265
prpB
Methylisocitrate lyase (EC 4.1.3.30)
AHA_2266
prpC
2-methylcitrate synthase (EC 2.3.3.5)
AHA_2267
prpD
2-methylcitrate dehydratase (EC 4.2.1.79)
Position: -159
Score: 6.2
Sequence: GTTTACGTTAGCGTAAAC
Position: -153
Score: 4.8
Sequence: GTTAGCGTAAACGTAAAT
Locus tag: AHA_2079
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: AHA_2080
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: AHA_2081
Name: ivdD
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: AHA_2082
Name: ivdE
Funciton: Enoyl-CoA hydratase/isomerase family protein
Locus tag: AHA_2083
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: AHA_2084
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
AHA_2079
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
AHA_2080
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
AHA_2081
ivdD
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
AHA_2082
ivdE
Enoyl-CoA hydratase/isomerase family protein
AHA_2083
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
AHA_2084
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -75
Score: 6.3
Sequence: GTTTACGTAAACGTAAAG
Locus tag: AHA_1976
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: AHA_1977
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
AHA_1976
etfB
Electron transfer flavoprotein, beta subunit
AHA_1977
etfA
Electron transfer flavoprotein, alpha subunit
Position: -58
Score: 6.3
Sequence: CTTTACGTTTACGTAAAC
Locus tag: AHA_1975
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Locus tag: AHA_1974
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
AHA_1975
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
AHA_1974
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -111
Score: 4.8
Sequence: ATTTACGTTTACGCTAAC
Position: -105
Score: 6.2
Sequence: GTTTACGCTAACGTAAAC
Locus tag: AHA_2078
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: AHA_2077
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: AHA_2076
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: AHA_2075
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: AHA_2074
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: AHA_2073
Name: liuR1
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: AHA_2072
Name: null
Funciton: Periplasmic binding protein
Locus tag: AHA_2071
Name: null
Funciton: hypothetical protein
AHA_2078
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
AHA_2077
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
AHA_2076
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
AHA_2075
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
AHA_2074
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
AHA_2073
liuR1
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
AHA_2072
Periplasmic binding protein
AHA_2071
hypothetical protein
Position: -17
Score: 5
Sequence: GTTGACGTTTGGGTAAGG
Locus tag: AHA_2141
Name: liuR2
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
AHA_2141
liuR2
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise