Regulog LexA - Sphingomonadales
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingomonadales
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Erythrobacter litoralis HTCC2594 | 12 | 10 |
| Erythrobacter sp. NAP1 | 12 | 10 |
| Novosphingobium aromaticivorans DSM 12444 | 13 | 10 |
| Sphingopyxis alaskensis RB2256 | 9 | 8 |
| Sphingobium japonicum UT26S | 13 | 10 |
| Sphingomonas wittichii RW1 | 12 | 9 |
| Zymomonas mobilis subsp. mobilis ZM4 | 3 | 3 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| COG3871 |
*
Erythrobacter litoralis HTCC2594 Site: position = -118 score = 5.04148 sequence = GTTCTATTTATGTTC Gene: ELI_05360: General stress protein |
*
Erythrobacter sp. NAP1 Site: position = -128 score = 4.70961 sequence = GTTCCTAATATGTTC Gene: NAP1_04570: General stress protein |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -274 score = 5.06219 sequence = GTTCTTTATATGTTC Gene: Saro_2041: General stress protein |
Gene: Sala_2167: General stress protein |
2
Sphingobium japonicum UT26S Gene: SJA_C1-20490: General stress protein Gene: SJA_C2-00860: General stress protein |
|
|
General stress protein |
| CRON 2. | ||||||||
| PF04055 |
*
Erythrobacter litoralis HTCC2594 Site: position = -27 score = 5.49878 sequence = GTTCCACATTTGTTC Gene: ELI_06955: Radical SAM domain protein |
*
Erythrobacter sp. NAP1 Site: position = -20 score = 5.06219 sequence = GTTCTTTATATGTTC Gene: NAP1_06190: Radical SAM domain protein |
Gene: Saro_1773: Radical SAM domain protein |
*
Sphingopyxis alaskensis RB2256 Site: position = -39 score = 5.15426 sequence = GTTCTTTATTTGTTC Gene: Sala_1181: Radical SAM domain protein |
*
Sphingobium japonicum UT26S Site: position = -25 score = 5.03359 sequence = GTTCTCTCTATGTTC Gene: SJA_C1-17380: Radical SAM domain protein |
*
Sphingomonas wittichii RW1 Site: position = -20 score = 4.59356 sequence = GTTCATGATATGTTC Gene: Swit_4095: Radical SAM domain protein |
|
Radical SAM domain protein |
| CRON 3. | ||||||||
| recA |
*
Erythrobacter litoralis HTCC2594 Site: position = -90 score = 5.1958 sequence = GTTCCCCCCTTGTTC Gene: ELI_07730: Recombinase A |
*
Erythrobacter sp. NAP1 Site: position = -126 score = 4.99993 sequence = GTTCTACTCTTGTTC Gene: NAP1_06995: Recombinase A |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -88 score = 5.1958 sequence = GTTCCCCCCTTGTTC Gene: Saro_1275: Recombinase A |
*
Sphingopyxis alaskensis RB2256 Site: position = -91 score = 5.33924 sequence = GTTCCCCTCTTGTTC Gene: Sala_1725: Recombinase A |
*
Sphingobium japonicum UT26S Site: position = -90 score = 5.33924 sequence = GTTCCCCTCTTGTTC Gene: SJA_C1-32810: Recombinase A |
*
Sphingomonas wittichii RW1 Site: position = -89 score = 4.99203 sequence = GTTCTCCCCTTGTTC Gene: Swit_0512: Recombinase A |
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -103 score = 5.03292 sequence = GTTCACCTTATGTTC Gene: ZMO1166: Recombinase A |
Recombinase A |
| CRON 4. | ||||||||
| lexA |
*
Erythrobacter litoralis HTCC2594 Site: position = -74 score = 5.34547 sequence = GTTCCACATTCGTTC Gene: ELI_06530: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Erythrobacter sp. NAP1 Site: position = -158 score = 5.34547 sequence = GTTCCACATTCGTTC Gene: NAP1_05785: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -93 score = 5.34547 sequence = GTTCCACATTCGTTC Gene: Saro_2029: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Sphingopyxis alaskensis RB2256 Site: position = -61 score = 5.03269 sequence = GTTCCACTATCGTTC Gene: Sala_0832: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Sphingobium japonicum UT26S Site: position = -33 score = 5.10323 sequence = GTTCTCCATCCGTTC Gene: SJA_C1-08440: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Sphingomonas wittichii RW1 Site: position = -44 score = 4.92149 sequence = GTTGCCTAAATGTTC Gene: Swit_3216: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -97 score = 5.09507 sequence = GTTCTATATCTGTTC Gene: ZMO0199: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| CRON 5. | ||||||||
| radA |
*
Erythrobacter litoralis HTCC2594 Site: position = -31 score = 4.99981 sequence = GTTCTCTTAATGTTC Gene: ELI_06075: DNA repair protein RadA |
*
Erythrobacter sp. NAP1 Site: position = -77 score = 5.22949 sequence = GTTCCACAAATGTTC Gene: NAP1_05385: DNA repair protein RadA |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -31 score = 5.17426 sequence = GTTCCAGATTTGTTC Gene: Saro_1956: DNA repair protein RadA |
*
Sphingopyxis alaskensis RB2256 Site: position = -32 score = 5.33731 sequence = GTTCCATTTTTGTTC Gene: Sala_1806: DNA repair protein RadA |
*
Sphingobium japonicum UT26S Site: position = -30 score = 5.29187 sequence = GTTCCTCATATGTTC Gene: SJA_C1-10500: DNA repair protein RadA |
*
Sphingomonas wittichii RW1 Site: position = -28 score = 4.21934 sequence = GTTCTTGGTTCGTTC Gene: Swit_4092: DNA repair protein RadA |
Gene: ZMO0589: DNA repair protein RadA |
DNA repair protein RadA |
| cvpA |
Gene: ELI_06080: Colicin V production protein |
Gene: NAP1_05390: Colicin V production protein |
Gene: Saro_1955: Colicin V production protein |
Gene: Sala_1805: Colicin V production protein |
Gene: SJA_C1-10510: Colicin V production protein |
Gene: Swit_4093: Colicin V production protein |
Gene: ZMO0590: Colicin V production protein |
Colicin V production protein |
| CRON 6. | ||||||||
| rmuC |
Gene: ELI_02090: DNA recombination protein RmuC |
*
Erythrobacter sp. NAP1 Site: position = -5 score = 4.89778 sequence = GTTCCATGTATGTTC Gene: NAP1_01345: DNA recombination protein RmuC |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -30 score = 4.76321 sequence = GTTCCCATTTCGTTC Gene: Saro_2898: DNA recombination protein RmuC |
*
Sphingopyxis alaskensis RB2256 Site: position = -20 score = 4.63908 sequence = GTTCGTCCTATGTTC Gene: Sala_2055: DNA recombination protein RmuC |
*
Sphingobium japonicum UT26S Site: position = -30 score = 4.97167 sequence = GTTCACCTTTCGTTC Gene: SJA_C1-04020: DNA recombination protein RmuC |
*
Sphingomonas wittichii RW1 Site: position = -28 score = 4.74249 sequence = GTTCCCATTCTGTTC Gene: Swit_0232: DNA recombination protein RmuC |
Gene: ZMO0814: DNA recombination protein RmuC |
DNA recombination protein RmuC |
| CRON 7. | ||||||||
| uvrA |
*
Erythrobacter litoralis HTCC2594 Site: position = -24 score = 0.607669 sequence = GAACACAACGGGAAC Gene: ELI_07900: Excinuclease ABC subunit A |
*
Erythrobacter sp. NAP1 Site: position = -64 score = 0.611846 sequence = GAACATTTGCGGAAC Gene: NAP1_07150: Excinuclease ABC subunit A |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -25 score = 0.657311 sequence = GAACATATATGGAAC Gene: Saro_1192: Excinuclease ABC subunit A |
*
Sphingopyxis alaskensis RB2256 Site: position = -26 score = 0.789832 sequence = GAACAAATCTGGAAC Gene: Sala_0926: Excinuclease ABC subunit A |
*
Sphingobium japonicum UT26S Site: position = -64 score = 0.789832 sequence = GAACAAATCTGGAAC Gene: SJA_C1-11700: Excinuclease ABC subunit A |
*
Sphingomonas wittichii RW1 Site: position = -25 score = 0.789832 sequence = GAACAAATCTGGAAC Gene: Swit_3107: Excinuclease ABC subunit A |
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -94 score = -1.16307 sequence = GAACAAAGGGGGAAT Gene: ZMO1588: Excinuclease ABC subunit A |
Excinuclease ABC subunit A |
| CRON 8. | ||||||||
| PF06319 |
*
Erythrobacter litoralis HTCC2594 Site: position = -27 score = 4.80751 sequence = GTTCGCCCTCTGTTC Gene: ELI_12605: Conserved hypothetical protein |
*
Erythrobacter sp. NAP1 Site: position = -27 score = 4.86355 sequence = GTTCGCTCTATGTTC Gene: NAP1_13438: Conserved hypothetical protein |
*2
Novosphingobium aromaticivorans DSM 12444 Gene: Saro_0621: Conserved hypothetical protein Site: position = -28 score = 4.16554 sequence = GTTCAGCGTTTGTTC Gene: Saro_0242: Conserved hypothetical protein |
Gene: Sala_2989: Conserved hypothetical protein |
*
Sphingobium japonicum UT26S Site: position = -27 score = 5.22125 sequence = GTTCCCTTCATGTTC Gene: SJA_C1-00110: Conserved hypothetical protein |
*
Sphingomonas wittichii RW1 Site: position = -9 score = 4.76152 sequence = GTTCCCGCAATGTTC Gene: Swit_2823: Conserved hypothetical protein |
|
Conserved hypothetical protein |
| CRON 9. | ||||||||
| uvrD |
*
Erythrobacter litoralis HTCC2594 Site: position = -24 score = 5.25716 sequence = GTTCCCTAACTGTTC Site: position = -69 score = 4.5026 sequence = GTTCCACAAACTTTC Gene: ELI_07645: ATP-dependent DNA helicase II |
*
Erythrobacter sp. NAP1 Site: position = -39 score = 5.27484 sequence = GTTCCCTACCTGTTC Gene: NAP1_06915: ATP-dependent DNA helicase II |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -19 score = 4.86082 sequence = GGTCCCTATCTGTTC Gene: Saro_1293: ATP-dependent DNA helicase II |
*
Sphingopyxis alaskensis RB2256 Site: position = -19 score = 5.27788 sequence = GTTCCCTAATCGTTC Gene: Sala_3012: ATP-dependent DNA helicase II |
*
Sphingobium japonicum UT26S Site: position = -87 score = 4.55142 sequence = ATTCGCCTTTTGTTC Gene: SJA_C1-21470: ATP-dependent DNA helicase II |
Gene: Swit_1212: ATP-dependent DNA helicase II |
Gene: ZMO0574: ATP-dependent DNA helicase II |
ATP-dependent DNA helicase II |
| CRON 10. | ||||||||
| yoaA |
*
Erythrobacter litoralis HTCC2594 Site: position = -37 score = 4.56954 sequence = GTTTACTTTTCGTTC Gene: ELI_02930: DinG family ATP-dependent helicase YoaA |
Gene: NAP1_02265: DinG family ATP-dependent helicase YoaA |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -27 score = 5.00373 sequence = GTTCCATTCCTGTTC Gene: Saro_2362: DinG family ATP-dependent helicase YoaA |
*
Sphingopyxis alaskensis RB2256 Site: position = -28 score = 4.63102 sequence = GTTCGCCTTTTGTCC Gene: Sala_1414: DinG family ATP-dependent helicase YoaA |
*
Sphingobium japonicum UT26S Site: position = -36 score = 5.12257 sequence = GTTTCCCTTTTGTTC Gene: SJA_C1-32440: DinG family ATP-dependent helicase YoaA |
*
Sphingomonas wittichii RW1 Site: position = -39 score = 5.3038 sequence = GTTCCCCAATCGTTC Gene: Swit_3565: DinG family ATP-dependent helicase YoaA |
Gene: ZMO0892: DinG family ATP-dependent helicase YoaA |
DinG family ATP-dependent helicase YoaA |
| CRON 11. | ||||||||
| imuA |
*
Erythrobacter litoralis HTCC2594 Site: position = -32 score = 0.792866 sequence = GAACATAAATAGAAC Gene: ELI_05365: Predicted RecA/RadA recombinase |
*
Erythrobacter sp. NAP1 Site: position = -148 score = 0.742462 sequence = GAACATATTAGGAAC Gene: NAP1_04575: Predicted RecA/RadA recombinase |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -17 score = 0.878017 sequence = GAACATAATAGGAAC Gene: Saro_1536: Predicted RecA/RadA recombinase |
|
*
Sphingobium japonicum UT26S Site: position = -19 score = 0.318879 sequence = GAACAAATAGGGAAC Gene: SJA_C1-11420: Predicted RecA/RadA recombinase |
*
Sphingomonas wittichii RW1 Site: position = -15 score = 0.907707 sequence = GAACAAAAATAGAAC Gene: Swit_1121: Predicted RecA/RadA recombinase |
|
Predicted RecA/RadA recombinase |
| imuB |
Gene: ELI_05370: DNA polymerase-like protein PA0670 |
Gene: NAP1_04580: hypothetical protein |
Gene: Saro_1537: DNA polymerase-like protein PA0670 |
Gene: Sala_2779: DNA polymerase-like protein PA0670 |
Gene: SJA_C1-11430: DNA polymerase-like protein PA0670 |
Gene: Swit_1120: DNA polymerase-like protein PA0670 |
|
DNA polymerase-like protein PA0670 |
| dnaE2 |
Gene: ELI_05390: DNA polymerase III alpha chain |
Gene: NAP1_04600: DNA polymerase III alpha chain |
Gene: Saro_1538: DNA polymerase III alpha chain |
Gene: Sala_2780: DNA polymerase III alpha chain |
Gene: SJA_C1-11440: DNA polymerase III alpha chain |
Gene: Swit_1119: DNA polymerase III alpha chain |
|
DNA polymerase III alpha chain |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |