Regulog KdgR - Pasteurellales

Properties
Regulator type:	Transcription factor
Regulator family:	IclR
Regulation mode:	repressor
Biological process:	Pectin and polygalacturonate utlization
Effector:	2-keto-3-deoxygluconate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By trascription factor - KdgR
By taxonomy - Pasteurellales
By TF family - IclR
By effector - 2-keto-3-deoxygluconate
By pathway - Pectin and polygalacturonate utlization

Statistics of regulated genes
Genome	Genes	Operons
Haemophilus influenzae Rd KW20
Aggregatibacter aphrophilus NJ8700
Pasteurella multocida subsp. multocida str. Pm70
Mannheimia succiniciproducens MBEL55E	13	6
Actinobacillus succinogenes 130Z	13	6
Haemophilus somnus 2336
Actinobacillus pleuropneumoniae serovar 7 str. AP76
Haemophilus ducreyi 35000HP
Haemophilus parasuis SH0165

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
togX	Haemophilus influenzae Rd KW20	Aggregatibacter aphrophilus NJ8700	Pasteurella multocida subsp. multocida str. Pm70	* Mannheimia succiniciproducens MBEL55E Site: position = -99 score = 6.05124 sequence = AAATAAAACAATGTTTTAAAT Gene: MS1741: predicted oligogalacturonate transporter	* Actinobacillus succinogenes 130Z Site: position = -97 score = 5.82035 sequence = AAATAAAATTTTGTTTCAAAA Site: position = -102 score = 5.04863 sequence = ATTAAAAATAAAATTTTGTTT Gene: Asuc_1468: predicted oligogalacturonate transporter	Haemophilus somnus 2336	Actinobacillus pleuropneumoniae serovar 7 str. AP76	Haemophilus ducreyi 35000HP	Haemophilus parasuis SH0165	predicted oligogalacturonate transporter
ogl	Haemophilus influenzae Rd KW20	Aggregatibacter aphrophilus NJ8700	Pasteurella multocida subsp. multocida str. Pm70	Mannheimia succiniciproducens MBEL55E Gene: MS1740: Oligogalacturonate lyase (EC 4.2.2.6)	Actinobacillus succinogenes 130Z Gene: Asuc_1467: Oligogalacturonate lyase (EC 4.2.2.6)	Haemophilus somnus 2336	Actinobacillus pleuropneumoniae serovar 7 str. AP76	Haemophilus ducreyi 35000HP	Haemophilus parasuis SH0165	Oligogalacturonate lyase (EC 4.2.2.6)

CRON 2.
pelX	Haemophilus influenzae Rd KW20	Aggregatibacter aphrophilus NJ8700	Pasteurella multocida subsp. multocida str. Pm70	* Mannheimia succiniciproducens MBEL55E Site: position = -124 score = 4.82169 sequence = TAATAAAATAAAACATTATTT Site: position = -119 score = 6.05124 sequence = AAATAAAACATTATTTCAAAT Gene: MS1742: Exopolygalacturonate lyase (EC 4.2.2.9)	* Actinobacillus succinogenes 130Z Site: position = -73 score = 5.19626 sequence = AAATAAAATTGTGTTATATTA Site: position = -117 score = 5.79232 sequence = TATTAAAATAATGTTTCAAAA Gene: Asuc_1469: Exopolygalacturonate lyase (EC 4.2.2.9)	Haemophilus somnus 2336	Actinobacillus pleuropneumoniae serovar 7 str. AP76	Haemophilus ducreyi 35000HP	Haemophilus parasuis SH0165	Exopolygalacturonate lyase (EC 4.2.2.9)

CRON 3.
kduD	Haemophilus influenzae Rd KW20	Aggregatibacter aphrophilus NJ8700	Pasteurella multocida subsp. multocida str. Pm70	* Mannheimia succiniciproducens MBEL55E Site: position = -88 score = 5.94981 sequence = AAATGAAATTATGTTTTATAT Gene: MS0563: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	* Actinobacillus succinogenes 130Z Site: position = -122 score = 5.44366 sequence = AATTGAAATTGTATTTCAGAA Gene: Asuc_1474: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	Haemophilus somnus 2336	Actinobacillus pleuropneumoniae serovar 7 str. AP76	Haemophilus ducreyi 35000HP	Haemophilus parasuis SH0165	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
spiX	Haemophilus influenzae Rd KW20	Aggregatibacter aphrophilus NJ8700	Pasteurella multocida subsp. multocida str. Pm70	Mannheimia succiniciproducens MBEL55E Gene: MS0564: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	Actinobacillus succinogenes 130Z Gene: Asuc_1473: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	Haemophilus somnus 2336	Actinobacillus pleuropneumoniae serovar 7 str. AP76	Haemophilus ducreyi 35000HP	Haemophilus parasuis SH0165	predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
kdgK	Haemophilus influenzae Rd KW20	Aggregatibacter aphrophilus NJ8700	Pasteurella multocida subsp. multocida str. Pm70	Mannheimia succiniciproducens MBEL55E Gene: MS0565: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Actinobacillus succinogenes 130Z Gene: Asuc_1472: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Haemophilus somnus 2336	Actinobacillus pleuropneumoniae serovar 7 str. AP76	Haemophilus ducreyi 35000HP	Haemophilus parasuis SH0165	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
eda	Haemophilus influenzae Rd KW20 Gene: HI0047: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Aggregatibacter aphrophilus NJ8700 Gene: NT05HA_0021: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Pasteurella multocida subsp. multocida str. Pm70 Gene: PM0947: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Mannheimia succiniciproducens MBEL55E Gene: MS0566: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Actinobacillus succinogenes 130Z Gene: Asuc_1471: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Haemophilus somnus 2336 Gene: HSM_0408: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Actinobacillus pleuropneumoniae serovar 7 str. AP76	Haemophilus ducreyi 35000HP	Haemophilus parasuis SH0165	2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
kdgF	Haemophilus influenzae Rd KW20	Aggregatibacter aphrophilus NJ8700	Pasteurella multocida subsp. multocida str. Pm70	Mannheimia succiniciproducens MBEL55E Gene: MS0567: Pectin degradation protein	Actinobacillus succinogenes 130Z Gene: Asuc_1470: Pectin degradation protein	Haemophilus somnus 2336	Actinobacillus pleuropneumoniae serovar 7 str. AP76	Haemophilus ducreyi 35000HP	Haemophilus parasuis SH0165	Pectin degradation protein

CRON 4.
kdgR	Haemophilus influenzae Rd KW20	Aggregatibacter aphrophilus NJ8700	Pasteurella multocida subsp. multocida str. Pm70	* Mannheimia succiniciproducens MBEL55E Site: position = -126 score = 5.94981 sequence = ATATAAAACATAATTTCATTT Gene: MS0562: 2-keto-3-deoxygluconate regulator, IclR family	* Actinobacillus succinogenes 130Z Site: position = -126 score = 5.44366 sequence = TTCTGAAATACAATTTCAATT Gene: Asuc_1475: 2-keto-3-deoxygluconate regulator, IclR family	Haemophilus somnus 2336	Actinobacillus pleuropneumoniae serovar 7 str. AP76	Haemophilus ducreyi 35000HP	Haemophilus parasuis SH0165	2-keto-3-deoxygluconate regulator, IclR family

CRON 5.
oglO	Haemophilus influenzae Rd KW20	Aggregatibacter aphrophilus NJ8700 Gene: NT05HA_0419: predicted oligogalacturonate-specific outer membrane porin	2 Pasteurella multocida subsp. multocida str. Pm70 Gene: PM0389: predicted oligogalacturonate-specific outer membrane porin Gene: PM0388: predicted oligogalacturonate-specific outer membrane porin	* Mannheimia succiniciproducens MBEL55E Site: position = -208 score = 5.05066 sequence = ATTAAAAATAAAATTTTAGAA Site: position = -170 score = 5.94633 sequence = TTTTAAAATATTGTTTTATTT Site: position = -107 score = 5.32864 sequence = ATTTGACATAGTGTTTCAATT Gene: MS0561: predicted oligogalacturonate-specific outer membrane porin	* Actinobacillus succinogenes 130Z Site: position = -148 score = 5.43415 sequence = TTTTAAAACCATATTTCAATT Gene: Asuc_1477: predicted oligogalacturonate-specific outer membrane porin	Haemophilus somnus 2336	Actinobacillus pleuropneumoniae serovar 7 str. AP76	Haemophilus ducreyi 35000HP	Haemophilus parasuis SH0165	predicted oligogalacturonate-specific outer membrane porin

CRON 6.
oglP	Haemophilus influenzae Rd KW20	Aggregatibacter aphrophilus NJ8700	Pasteurella multocida subsp. multocida str. Pm70	* Mannheimia succiniciproducens MBEL55E Site: position = -155 score = 6.12521 sequence = AATTAAAATAATGTTTTATTT Gene: MS0698: predicted oligogalacturonate TRAP transporter, substrate-binding subunit	* Actinobacillus succinogenes 130Z Site: position = -153 score = 5.54167 sequence = ATTCAAAACATAATTTCATTT Gene: Asuc_1923: predicted oligogalacturonate TRAP transporter, substrate-binding subunit	Haemophilus somnus 2336	Actinobacillus pleuropneumoniae serovar 7 str. AP76	Haemophilus ducreyi 35000HP	Haemophilus parasuis SH0165	predicted oligogalacturonate TRAP transporter, substrate-binding subunit
oglQ	Haemophilus influenzae Rd KW20	Aggregatibacter aphrophilus NJ8700	Pasteurella multocida subsp. multocida str. Pm70	Mannheimia succiniciproducens MBEL55E Gene: MS0697: predicted oligogalacturonate TRAP transporter, small transmembrane subunit	Actinobacillus succinogenes 130Z Gene: Asuc_1922: predicted oligogalacturonate TRAP transporter, small transmembrane subunit	Haemophilus somnus 2336	Actinobacillus pleuropneumoniae serovar 7 str. AP76	Haemophilus ducreyi 35000HP	Haemophilus parasuis SH0165	predicted oligogalacturonate TRAP transporter, small transmembrane subunit
oglM	Haemophilus influenzae Rd KW20	Aggregatibacter aphrophilus NJ8700	Pasteurella multocida subsp. multocida str. Pm70	Mannheimia succiniciproducens MBEL55E Gene: MS0696: predicted oligogalacturonate TRAP transporter, large transmembrane subunit	Actinobacillus succinogenes 130Z Gene: Asuc_1921: predicted oligogalacturonate TRAP transporter, large transmembrane subunit	Haemophilus somnus 2336	Actinobacillus pleuropneumoniae serovar 7 str. AP76	Haemophilus ducreyi 35000HP	Haemophilus parasuis SH0165	predicted oligogalacturonate TRAP transporter, large transmembrane subunit

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog KdgR - Pasteurellales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --