Regulon of KdgR in Actinobacillus succinogenes 130Z
| Regulator type: | Transcription factor |
| TF locus tag: | Asuc_1475 |
| Regulator family: | IclR |
| Regulation mode: | repressor |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Regulog: | KdgR - Pasteurellales |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - KdgR
- By taxonomy - Pasteurellales
- By TF family - IclR
- By effector - 2-keto-3-deoxygluconate
- By pathway - Pectin and polygalacturonate utlization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -117
Score: 5.8 Sequence: TATTAAAATAATGTTTCAAAA
Position: -73
Score: 5.2 Sequence: AAATAAAATTGTGTTATATTA
Locus tag: Asuc_1469
Name: pelX Funciton: Exopolygalacturonate lyase (EC 4.2.2.9) |
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pelX
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Exopolygalacturonate lyase (EC 4.2.2.9)
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Position: -102
Score: 5 Sequence: ATTAAAAATAAAATTTTGTTT
Position: -97
Score: 5.8 Sequence: AAATAAAATTTTGTTTCAAAA
Locus tag: Asuc_1468
Name: togX Funciton: predicted oligogalacturonate transporter
Locus tag: Asuc_1467
Name: ogl Funciton: Oligogalacturonate lyase (EC 4.2.2.6) |
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togX
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predicted oligogalacturonate transporter
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ogl
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Oligogalacturonate lyase (EC 4.2.2.6)
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Position: -153
Score: 5.5 Sequence: ATTCAAAACATAATTTCATTT
Locus tag: Asuc_1923
Name: oglP Funciton: predicted oligogalacturonate TRAP transporter, substrate-binding subunit
Locus tag: Asuc_1922
Name: oglQ Funciton: predicted oligogalacturonate TRAP transporter, small transmembrane subunit
Locus tag: Asuc_1921
Name: oglM Funciton: predicted oligogalacturonate TRAP transporter, large transmembrane subunit |
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oglP
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predicted oligogalacturonate TRAP transporter, substrate-binding subunit
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oglQ
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predicted oligogalacturonate TRAP transporter, small transmembrane subunit
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oglM
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predicted oligogalacturonate TRAP transporter, large transmembrane subunit
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Position: -148
Score: 5.4 Sequence: TTTTAAAACCATATTTCAATT
Locus tag: Asuc_1477
Name: oglO Funciton: predicted oligogalacturonate-specific outer membrane porin |
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oglO
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predicted oligogalacturonate-specific outer membrane porin
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Position: -122
Score: 5.4 Sequence: AATTGAAATTGTATTTCAGAA
Locus tag: Asuc_1474
Name: kduD Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Locus tag: Asuc_1473
Name: spiX Funciton: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Locus tag: Asuc_1472
Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Locus tag: Asuc_1471
Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Locus tag: Asuc_1470
Name: kdgF Funciton: Pectin degradation protein |
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kduD
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2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
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spiX
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predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
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kdgK
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2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
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eda
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2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
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kdgF
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Pectin degradation protein
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Position: -126
Score: 5.4 Sequence: TTCTGAAATACAATTTCAATT
Locus tag: Asuc_1475
Name: kdgR Funciton: 2-keto-3-deoxygluconate regulator, IclR family |
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kdgR
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2-keto-3-deoxygluconate regulator, IclR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |