Regulon of KdgR in Mannheimia succiniciproducens MBEL55E

Properties
Regulator type:	Transcription factor
TF locus tag:	MS0562
Regulator family:	IclR
Regulation mode:	repressor
Biological process:	Pectin and polygalacturonate utlization
Effector:	2-keto-3-deoxygluconate
Regulog:	KdgR - Pasteurellales
Statistics of regulated genes:
- Genes	13
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By trascription factor - KdgR
By taxonomy - Pasteurellales
By TF family - IclR
By effector - 2-keto-3-deoxygluconate
By pathway - Pectin and polygalacturonate utlization

Regulated operons
	Locus Tag	Name	Function
Position: -124 Score: 4.8 Sequence: TAATAAAATAAAACATTATTT Position: -119 Score: 6.1 Sequence: AAATAAAACATTATTTCAAAT Locus tag: MS1742 Name: pelX Funciton: Exopolygalacturonate lyase (EC 4.2.2.9)
	MS1742	pelX	Exopolygalacturonate lyase (EC 4.2.2.9)
Position: -155 Score: 6.1 Sequence: AATTAAAATAATGTTTTATTT Locus tag: MS0698 Name: oglP Funciton: predicted oligogalacturonate TRAP transporter, substrate-binding subunit Locus tag: MS0697 Name: oglQ Funciton: predicted oligogalacturonate TRAP transporter, small transmembrane subunit Locus tag: MS0696 Name: oglM Funciton: predicted oligogalacturonate TRAP transporter, large transmembrane subunit
	MS0698	oglP	predicted oligogalacturonate TRAP transporter, substrate-binding subunit
	MS0697	oglQ	predicted oligogalacturonate TRAP transporter, small transmembrane subunit
	MS0696	oglM	predicted oligogalacturonate TRAP transporter, large transmembrane subunit
Position: -99 Score: 6.1 Sequence: AAATAAAACAATGTTTTAAAT Locus tag: MS1741 Name: togX Funciton: predicted oligogalacturonate transporter Locus tag: MS1740 Name: ogl Funciton: Oligogalacturonate lyase (EC 4.2.2.6)
	MS1741	togX	predicted oligogalacturonate transporter
	MS1740	ogl	Oligogalacturonate lyase (EC 4.2.2.6)
Position: -208 Score: 5.1 Sequence: ATTAAAAATAAAATTTTAGAA Position: -170 Score: 5.9 Sequence: TTTTAAAATATTGTTTTATTT Position: -107 Score: 5.3 Sequence: ATTTGACATAGTGTTTCAATT Locus tag: MS0561 Name: oglO Funciton: predicted oligogalacturonate-specific outer membrane porin
	MS0561	oglO	predicted oligogalacturonate-specific outer membrane porin
Position: -126 Score: 5.9 Sequence: ATATAAAACATAATTTCATTT Locus tag: MS0562 Name: kdgR Funciton: 2-keto-3-deoxygluconate regulator, IclR family
	MS0562	kdgR	2-keto-3-deoxygluconate regulator, IclR family
Position: -88 Score: 5.9 Sequence: AAATGAAATTATGTTTTATAT Locus tag: MS0563 Name: kduD Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) Locus tag: MS0564 Name: spiX Funciton: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) Locus tag: MS0565 Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) Locus tag: MS0566 Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) Locus tag: MS0567 Name: kdgF Funciton: Pectin degradation protein
	MS0563	kduD	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
	MS0564	spiX	predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
	MS0565	kdgK	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
	MS0566	eda	2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
	MS0567	kdgF	Pectin degradation protein

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD