Regulog Fur - Rhodospirillales
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodospirillales
- By trascription factor - FUR
- By TF family - FUR
- By effector - Iron ion, (Fe2+)
- By pathway - Iron homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Rhodospirillum rubrum ATCC 11170 | 46 | 21 |
| Magnetospirillum magnetotacticum MS-1 | 14 | 11 |
| Magnetospirillum magneticum AMB-1 | 21 | 10 |
| Azospirillum sp. B510 | 14 | 7 |
| Rhodospirillum centenum SW | 31 | 10 |
| Gluconacetobacter diazotrophicus PAl 5 | 13 | 5 |
| Acetobacter pasteurianus IFO 3283-01 | 21 | 13 |
| Gluconobacter oxydans 621H | 9 | 6 |
| Granulibacter bethesdensis CGDNIH1 | 14 | 7 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| omp5 |
|
|
|
|
|
|
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -115 score = 4.35138 sequence = TATGATATTGATAATCATT Site: position = -86 score = 4.66359 sequence = GATGAGAATGATTATCAGG Gene: APA01_22280: TonB-dependent siderophore receptor |
*
Gluconobacter oxydans 621H Site: position = -152 score = 4.54833 sequence = ATTGCTAATGAGAATCATT Site: position = -146 score = 5.79575 sequence = AATGAGAATCATTTGCATT Gene: GOX0536: TonB-dependent siderophore receptor |
|
TonB-dependent siderophore receptor |
| CRON 2. | ||||||||||
| Rru_A0841 |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -179 score = 4.551 sequence = AACGATAATTAATATCATT Gene: Rru_A0841: Transcriptional Regulator, AraC family |
|
|
|
|
|
|
|
|
Transcriptional Regulator, AraC family |
| CRON 3. | ||||||||||
| omp6 |
|
|
|
|
|
|
|
*
Gluconobacter oxydans 621H Site: position = -59 score = 5.24172 sequence = GTTGAGAATAATTATCATT Gene: GOX0641: TonB-dependent siderophore receptor |
*
Granulibacter bethesdensis CGDNIH1 Site: position = -56 score = 5.13597 sequence = ATTGAGAATACCTCGCATT Gene: GbCGDNIH1_1940: TonB-dependent siderophore receptor |
TonB-dependent siderophore receptor |
| CRON 4. | ||||||||||
| fecI2 |
*
Rhodospirillum rubrum ATCC 11170 Site: position = 19 score = 4.94951 sequence = AATGCGAAGCGTTTGCATT Gene: Rru_A2372: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|
|
|
|
|
|
|
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
| fecR2 |
Gene: Rru_A2373: Fe2+-dicitrate sensor, membrane component |
|
|
|
|
|
|
|
|
Fe2+-dicitrate sensor, membrane component |
| CRON 5. | ||||||||||
| Rru_A2799 |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -194 score = 5.60265 sequence = AATGAAAGTCATTCGCAAT Gene: Rru_A2799: Cation transport ATPase |
|
|
|
|
|
|
|
|
Cation transport ATPase |
| Rru_A2798 |
Gene: Rru_A2798: ABC-type phosphate transport system, permease component |
|
|
|
|
|
|
|
|
ABC-type phosphate transport system, permease component |
| Rru_A2797 |
Gene: Rru_A2797: Hypothetical protein |
|
|
|
|
|
|
|
|
Hypothetical protein |
| Rru_A2796 |
Gene: Rru_A2796: Probable cation-transporting P-type ATPase C (EC 3.6.3.-) (Metal-transporting ATPase Mta72) |
|
|
|
|
|
|
|
|
Probable cation-transporting P-type ATPase C (EC 3.6.3.-) (Metal-transporting ATPase Mta72) |
| CRON 6. | ||||||||||
| fhuA |
|
|
|
|
*
Rhodospirillum centenum SW Site: position = -164 score = 4.95112 sequence = AATGATAACCATTCTCATG Gene: RC1_3215: TonB-dependent siderophore receptor |
|
*2
Acetobacter pasteurianus IFO 3283-01 Site: position = -48 score = 5.5345 sequence = GATGCGAATGATTTTCATT Gene: APA01_13620: TonB-dependent siderophore receptor Gene: APA01_13570: TonB-dependent siderophore receptor |
|
*
Granulibacter bethesdensis CGDNIH1 Site: position = -1 score = 4.54557 sequence = AATGAGAACGATTATTATA Gene: GbCGDNIH1_0172: TonB-dependent siderophore receptor |
TonB-dependent siderophore receptor |
| RC1_3216 |
|
|
|
|
Gene: RC1_3216: Hypothetical protein |
|
|
|
|
Hypothetical protein |
| Rru_A2314 |
Gene: Rru_A2314: Hypothetical protein |
|
|
|
Gene: RC1_3217: Hypothetical protein |
|
Gene: APA01_14660: Hypothetical protein |
|
|
Hypothetical protein |
| COG3182 |
Gene: Rru_A2315: PepSY-associated TM helix domain protein |
|
|
|
Gene: RC1_3218: PepSY-associated TM helix domain protein |
|
Gene: APA01_14650: PepSY-associated TM helix domain protein |
2
Gluconobacter oxydans 621H Gene: GOX0640: PepSY-associated TM helix domain protein Gene: GOX0639: PepSY-associated TM helix domain protein |
|
PepSY-associated TM helix domain protein |
| CRON 7. | ||||||||||
| exbB |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -197 score = 4.62511 sequence = ATTAATAGTCAATTGCATT Gene: Rru_A2155: biopolymer transport ExbB protein |
|
|
Gene: AZL_d01920: biopolymer transport ExbB protein |
*
Rhodospirillum centenum SW Site: position = -86 score = 4.33254 sequence = GTTGATTATCATTCGCACT Gene: RC1_3833: biopolymer transport ExbB protein |
|
*2
Acetobacter pasteurianus IFO 3283-01 Gene: APA01_13510: biopolymer transport ExbB protein Site: position = -148 score = 4.83706 sequence = GATGATAGTGATTCGCACT Gene: APA01_22290: biopolymer transport ExbB protein |
*
Gluconobacter oxydans 621H Site: position = -60 score = 5.297 sequence = AGTGAGAATGACTCTCATT Gene: GOX0532: biopolymer transport ExbB protein |
*
Granulibacter bethesdensis CGDNIH1 Site: position = -30 score = 5.19944 sequence = CTTGCGAATAATTCGCAAC Gene: GbCGDNIH1_0039: biopolymer transport ExbB protein |
biopolymer transport ExbB protein |
| exbD |
Gene: Rru_A2154: biopolymer transport ExbD protein |
|
|
Gene: AZL_d01930: biopolymer transport ExbD protein |
Gene: RC1_3834: biopolymer transport ExbD protein |
|
2
Acetobacter pasteurianus IFO 3283-01 Gene: APA01_13500: biopolymer transport ExbD protein Gene: APA01_22300: biopolymer transport ExbD protein |
Gene: GOX0531: biopolymer transport ExbD protein |
Gene: GbCGDNIH1_0040: biopolymer transport ExbD protein |
biopolymer transport ExbD protein |
| tonB |
Gene: Rru_A2153: Ferric siderophore transport system, periplasmic binding protein TonB |
|
|
Gene: AZL_d01940: Ferric siderophore transport system, periplasmic binding protein TonB |
Gene: RC1_3835: Ferric siderophore transport system, periplasmic binding protein TonB |
|
2
Acetobacter pasteurianus IFO 3283-01 Gene: APA01_13490: Ferric siderophore transport system, periplasmic binding protein TonB Gene: APA01_22310: Ferric siderophore transport system, periplasmic binding protein TonB |
Gene: GOX0530: Ferric siderophore transport system, periplasmic binding protein TonB |
Gene: GbCGDNIH1_0041: Ferric siderophore transport system, periplasmic binding protein TonB |
Ferric siderophore transport system, periplasmic binding protein TonB |
| CRON 8. | ||||||||||
| omp2 |
|
|
|
|
|
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -65 score = 5.27102 sequence = ATTGTGAGTAATTCGCATT Gene: Gdia_1948: TonB-dependent siderophore receptor |
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -38 score = 5.28621 sequence = TATGCAACTGATTCGCATT Site: position = -65 score = 5.12401 sequence = ATTGCGAATCATTCGCGAC Gene: APA01_15440: TonB-dependent siderophore receptor |
*
Gluconobacter oxydans 621H Site: position = -99 score = 5.25373 sequence = AATGAGAATCTTTCGCAAT Site: position = -66 score = 5.55378 sequence = ATTGAGAATTAGTCGCATT Gene: GOX1246: TonB-dependent siderophore receptor |
|
TonB-dependent siderophore receptor |
| Gdia_1949 |
|
|
|
|
|
Gene: Gdia_1949: 2OG-Fe(II) oxygenase |
Gene: APA01_15430: 2OG-Fe(II) oxygenase |
|
|
2OG-Fe(II) oxygenase |
| Gdia_2045 |
|
|
|
|
|
2
Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_2045: Sel1 domain protein repeat-containing protein Gene: Gdia_1950: Sel1 domain protein repeat-containing protein |
Gene: APA01_15450: Sel1 domain protein repeat-containing protein |
Gene: GOX1247: Sel1 domain protein repeat-containing protein |
|
Sel1 domain protein repeat-containing protein |
| omp3 |
|
|
|
|
|
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -57 score = 5.33079 sequence = GTTGAGAATGATTATCATT Gene: Gdia_2044: TonB-dependent siderophore receptor |
|
|
|
TonB-dependent siderophore receptor |
| CRON 9. | ||||||||||
| fepA |
|
|
|
|
*
Rhodospirillum centenum SW Site: position = -240 score = 5.38647 sequence = AATAAGAATGACTCGCATT Gene: RC1_0333: TonB-dependent siderophore receptor |
|
|
|
|
TonB-dependent siderophore receptor |
| RC1_0332 |
|
|
|
|
Gene: RC1_0332: Predicted hydrolase of the alpha/beta superfamily |
|
|
|
|
Predicted hydrolase of the alpha/beta superfamily |
| RC1_0331 |
|
|
|
|
Gene: RC1_0331: Iron uptake protein |
|
|
|
|
Iron uptake protein |
| COG3182 |
|
|
|
|
Gene: RC1_0330: PepSY-associated TM helix domain protein |
Gene: Gdia_2589: PepSY-associated TM helix domain protein |
|
|
|
PepSY-associated TM helix domain protein |
| PF11804 |
|
|
|
|
Gene: RC1_0328: iron uptake protein |
Gene: Gdia_2588: iron uptake protein |
|
|
|
iron uptake protein |
| omp1 |
|
|
|
|
|
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -57 score = 5.64285 sequence = ATTGCGAATCAGTCTCATT Gene: Gdia_2591: TonB-dependent siderophore receptor |
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -72 score = 5.26264 sequence = CTTGCAAATGATTCTCAAT Gene: APA01_04950: TonB-dependent siderophore receptor |
Gene: GOX2204: TonB-dependent siderophore receptor |
|
TonB-dependent siderophore receptor |
| Gdia_2590 |
|
|
|
|
|
Gene: Gdia_2590: Hypothetical protein |
|
|
|
Hypothetical protein |
| CRON 10. | ||||||||||
| mtr1 |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -61 score = 3.75003 sequence = AATGAAAATGCATGGCTTT Gene: Rru_A2809: High-affinity Fe2+/Pb2+ permease |
*
Magnetospirillum magnetotacticum MS-1 Site: position = -64 score = 4.72314 sequence = AATTCGAGTCATTAGCAAA Gene: Magn03007972: High-affinity Fe2+/Pb2+ permease |
*
Magnetospirillum magneticum AMB-1 Site: position = -40 score = 4.72314 sequence = AATTCGAGTCATTAGCAAA Gene: amb0936: High-affinity Fe2+/Pb2+ permease |
|
|
|
|
|
|
High-affinity Fe2+/Pb2+ permease |
| mtr2 |
|
*
Magnetospirillum magnetotacticum MS-1 Site: position = -78 score = 5.21905 sequence = AATGCAATTCGCTCGCATT Gene: Magn03010317: High-affinity Fe2+/Pb2+ permease |
*2
Magnetospirillum magneticum AMB-1 Site: position = -71 score = 5.25909 sequence = AATGCGAGCTATTTGCAAT Gene: amb1681: High-affinity Fe2+/Pb2+ permease Gene: amb0937: High-affinity Fe2+/Pb2+ permease |
Gene: AZL_015570: High-affinity Fe2+/Pb2+ permease |
|
Gene: Gdia_1356: High-affinity Fe2+/Pb2+ permease |
Gene: APA01_25260: High-affinity Fe2+/Pb2+ permease |
|
|
High-affinity Fe2+/Pb2+ permease |
| COG0348 |
|
Gene: Magn03009988: Polyferredoxin |
3
Magnetospirillum magneticum AMB-1 Gene: amb1059: Polyferredoxin Gene: amb4413: Polyferredoxin Gene: amb0938: Polyferredoxin |
|
|
|
|
|
|
Polyferredoxin |
| COG3470 |
Gene: Rru_A2808: Uncharacterized protein probably involved in high-affinity Fe2+ transport |
*
Magnetospirillum magnetotacticum MS-1 Site: position = -47 score = 5.55574 sequence = ATTGCGAGTCACTTGCATT Gene: Magn03009213: Uncharacterized protein probably involved in high-affinity Fe2+ transport |
*3
Magnetospirillum magneticum AMB-1 Gene: amb0939: Uncharacterized protein probably involved in high-affinity Fe2+ transport Gene: amb0940: Uncharacterized protein probably involved in high-affinity Fe2+ transport Site: position = -197 score = 5.19794 sequence = ATTGCGATCAACTCTCATT Site: position = -1 score = 5.62895 sequence = AATGCGAGTCACTTGCATT Gene: amb4411: Uncharacterized protein probably involved in high-affinity Fe2+ transport |
|
|
Gene: Gdia_1355: Uncharacterized protein probably involved in high-affinity Fe2+ transport |
Gene: APA01_25270: Uncharacterized protein probably involved in high-affinity Fe2+ transport |
|
|
Uncharacterized protein probably involved in high-affinity Fe2+ transport |
| oprB |
|
Gene: Magn03009989: Carbohydrate-selective porin OprB |
2
Magnetospirillum magneticum AMB-1 Gene: amb0941: Carbohydrate-selective porin OprB Gene: amb4412: Carbohydrate-selective porin OprB |
|
|
|
|
|
|
Carbohydrate-selective porin OprB |
| SSF49503 |
|
*
Magnetospirillum magnetotacticum MS-1 Site: position = -39 score = 3.81749 sequence = TATGAGAATGATAAACGTT Gene: Magn03009212: Cupredoxin |
|
*
Azospirillum sp. B510 Site: position = -60 score = 3.68007 sequence = AATGATTTTCACAAGCAAA Gene: AZL_015580: Cupredoxin |
|
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -53 score = 4.9104 sequence = AATGCGAACCAGTCGCGTT Gene: Gdia_1357: Cupredoxin |
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -38 score = 4.57772 sequence = TTTGACAATGATTCGCACT Gene: APA01_25250: Cupredoxin |
|
|
Cupredoxin |
| CRON 11. | ||||||||||
| Magn03009368 |
|
*
Magnetospirillum magnetotacticum MS-1 Site: position = -165 score = 4.3051 sequence = TGTGATAATCATACGCAAT Gene: Magn03009368: Methyl-accepting chemotaxis protein |
*
Magnetospirillum magneticum AMB-1 Site: position = -132 score = 4.82514 sequence = TATGATAATCATACGCAAT Gene: amb1018: Methyl-accepting chemotaxis protein |
|
|
|
|
|
|
Methyl-accepting chemotaxis protein |
| CRON 12. | ||||||||||
| Magn03009367 |
|
*
Magnetospirillum magnetotacticum MS-1 Site: position = -134 score = 4.3051 sequence = ATTGCGTATGATTATCACA Gene: Magn03009367: Hypothetical protein |
*
Magnetospirillum magneticum AMB-1 Site: position = -83 score = 4.82514 sequence = ATTGCGTATGATTATCATA Gene: amb1019: Hypothetical protein |
|
|
|
|
|
|
Hypothetical protein |
| Magn03009366 |
|
Gene: Magn03009366: ATPase components of ABC transporters with duplicated ATPase domains |
Gene: amb1020: ATPase components of ABC transporters with duplicated ATPase domains |
|
|
|
|
|
|
ATPase components of ABC transporters with duplicated ATPase domains |
| Magn03009365 |
|
Gene: Magn03009365: Serine/threonine protein kinase |
Gene: amb1021: Serine/threonine protein kinase |
|
|
|
|
|
|
Serine/threonine protein kinase |
| CRON 13. | ||||||||||
| irr2 |
|
|
*
Magnetospirillum magneticum AMB-1 Site: position = -32 score = 5.26391 sequence = GTTGCGAGTAAATCGCAAT Gene: amb1662: Iron-responsive regulator Irr |
|
|
|
|
|
|
Iron-responsive regulator Irr |
| bfr1 |
Gene: Rru_A3474: Bacterioferritin |
Gene: Magn03010808: Bacterioferritin |
2
Magnetospirillum magneticum AMB-1 Gene: amb0825: Bacterioferritin Gene: amb1663: Bacterioferritin |
*
Azospirillum sp. B510 Site: position = -175 score = 4.65125 sequence = ATTGACATTGATTCTCAAG Site: position = -109 score = 4.81935 sequence = AATGATAGTGACTATCAAC Gene: AZL_023850: Bacterioferritin |
|
|
|
|
|
Bacterioferritin |
| bfr2 |
|
Gene: Magn03010809: Bacterioferritin (cytochrome b1) |
2
Magnetospirillum magneticum AMB-1 Gene: amb0824: Bacterioferritin (cytochrome b1) Gene: amb1664: Bacterioferritin (cytochrome b1) |
Gene: AZL_023860: Bacterioferritin (cytochrome b1) |
|
|
|
|
|
Bacterioferritin (cytochrome b1) |
| CRON 14. | ||||||||||
| Magn03007091 |
|
*
Magnetospirillum magnetotacticum MS-1 Site: position = -72 score = 4.46917 sequence = ATTGACAATGAGTGGCAAT Gene: Magn03007091: Hypothetical protein |
*
Magnetospirillum magneticum AMB-1 Site: position = -72 score = 4.46917 sequence = ATTGACAATGAGTGGCAAT Gene: amb1008: Hypothetical protein |
|
|
|
|
|
|
Hypothetical protein |
| CRON 15. | ||||||||||
| feoA |
|
|
|
*
Azospirillum sp. B510 Site: position = -79 score = 5.03344 sequence = AATGAAAGTGATTCGCAGA Gene: AZL_b04590: Ferrous iron transport protein A |
*
Rhodospirillum centenum SW Site: position = -86 score = 4.59123 sequence = GGTGCGACTTGTTCGCATT Gene: RC1_2449: Ferrous iron transport protein A |
|
|
*
Gluconobacter oxydans 621H Site: position = -105 score = 5.01446 sequence = GATGCAAATCATTCTCACT Gene: GOX0673: Ferrous iron transport protein A |
Gene: GbCGDNIH1_1618: Ferrous iron transport protein A |
Ferrous iron transport protein A |
| feoB |
|
|
|
Gene: AZL_b04580: Ferrous iron transport protein B |
Gene: RC1_2448: Ferrous iron transport protein B |
|
|
Gene: GOX0674: Ferrous iron transport protein B |
Gene: GbCGDNIH1_1619: Ferrous iron transport protein B |
Ferrous iron transport protein B |
| CRON 16. | ||||||||||
| phnP |
|
*2
Magnetospirillum magnetotacticum MS-1 Gene: Magn03008962: Hemerythrin Site: position = -121 score = 5.21905 sequence = AATGCGAGCGAATTGCATT Gene: Magn03010318: Hemerythrin |
*
Magnetospirillum magneticum AMB-1 Site: position = -84 score = 5.25909 sequence = ATTGCAAATAGCTCGCATT Gene: amb1682: Hemerythrin |
|
|
|
|
|
|
Hemerythrin |
| CRON 17. | ||||||||||
| efeU |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -41 score = 5.30064 sequence = ATTGATAATTAATCTCATT Gene: Rru_A2597: Ferrous iron transport permease EfeU |
|
|
|
|
|
|
|
|
Ferrous iron transport permease EfeU |
| efeO |
Gene: Rru_A2598: Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain |
|
|
|
|
|
|
|
|
Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain |
| efeB |
Gene: Rru_A2599: Ferrous iron transport peroxidase EfeB |
|
|
|
|
|
|
|
|
Ferrous iron transport peroxidase EfeB |
| efeO2 |
Gene: Rru_A2600: Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain |
|
|
|
|
|
|
|
|
Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain |
| CRON 18. | ||||||||||
| Rru_A0697 |
|
|
|
*
Azospirillum sp. B510 Site: position = -211 score = 5.02012 sequence = ACTGATAATTAATCTCATT Gene: AZL_e01200: MATE efflux family protein |
|
|
|
|
|
MATE efflux family protein |
| AZL_e01190 |
|
|
|
Gene: AZL_e01190: Ferrichrome ABC transporter, periplasmic binding protein |
|
|
|
|
|
Ferrichrome ABC transporter, periplasmic binding protein |
| AZL_e01180 |
|
|
|
Gene: AZL_e01180: Iron complex ABC transport system, permease protein |
|
|
|
|
|
Iron complex ABC transport system, permease protein |
| AZL_e01170 |
|
|
|
Gene: AZL_e01170: Iron complex ABC transport system, permease protein |
|
|
|
|
|
Iron complex ABC transport system, permease protein |
| AZL_e01160 |
|
|
|
Gene: AZL_e01160: Iron complex ABC transport system, ATP-binding protein |
|
|
|
|
|
Iron complex ABC transport system, ATP-binding protein |
| CRON 19. | ||||||||||
| amb1811 |
|
|
*
Magnetospirillum magneticum AMB-1 Site: position = -36 score = 5.88977 sequence = ATTGCGAGTCATTCGCATT Gene: amb1811: Hypothetical protein |
|
|
|
|
|
|
Hypothetical protein |
| CRON 20. | ||||||||||
| Rru_A1456 |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -113 score = 4.45052 sequence = CATGAGACGCATTTTCATT Gene: Rru_A1456: Transcriptional regulator, AraC family |
|
|
|
|
|
|
|
|
Transcriptional regulator, AraC family |
| CRON 21. | ||||||||||
| Rru_A2763 |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -97 score = 5.43036 sequence = AATGAGAGTGATTCTCATG Gene: Rru_A2763: Sensory box/GGDEF family protein |
|
|
|
|
|
|
|
|
Sensory box/GGDEF family protein |
| Rru_A2762 |
Gene: Rru_A2762: High-affinity Fe2+/Pb2+ permease |
|
|
|
|
|
|
|
|
High-affinity Fe2+/Pb2+ permease |
| CRON 22. | ||||||||||
| omp7 |
|
|
|
|
|
|
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -102 score = 4.03503 sequence = AACGCAAATGATAATCATG Site: position = -39 score = 5.16172 sequence = AATAATAATGATTCTCATT Gene: APA01_14060: TonB-dependent siderophore receptor |
|
|
TonB-dependent siderophore receptor |
| CRON 23. | ||||||||||
| bphO |
|
|
|
|
|
|
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -139 score = 5.16172 sequence = AATGAGAATCATTATTATT Site: position = -76 score = 4.03503 sequence = CATGATTATCATTTGCGTT Gene: APA01_14070: Heme oxygenase |
Gene: GOX0243: Heme oxygenase |
Gene: GbCGDNIH1_0284: Heme oxygenase |
Heme oxygenase |
| CRON 24. | ||||||||||
| omp8 |
|
|
|
*
Azospirillum sp. B510 Site: position = -53 score = 4.74279 sequence = GATGATAATCATTTGCACT Site: position = -20 score = 5.43338 sequence = AATGAGAATGATTCTTATT Site: position = -59 score = 4.12529 sequence = ATTGAAGATGATAATCATT Gene: AZL_d04450: TonB-dependent siderophore receptor |
|
|
|
|
|
TonB-dependent siderophore receptor |
| CRON 25. | ||||||||||
| omp9 |
|
|
|
|
*
Rhodospirillum centenum SW Site: position = -78 score = 5.26958 sequence = ATTGATATTGACTCGCAAT Gene: RC1_0945: TonB-dependent siderophore receptor |
|
|
|
|
TonB-dependent siderophore receptor |
| COG3182 |
|
|
|
|
Gene: RC1_0946: PepSY-associated TM helix domain protein |
|
|
|
|
PepSY-associated TM helix domain protein |
| CRON 26. | ||||||||||
| omp10 |
*2
Rhodospirillum rubrum ATCC 11170 Site: position = -169 score = 4.73092 sequence = AACGAGACTTATTAGCAAT Gene: Rru_A0880: TonB-dependent siderophore receptor Site: position = -104 score = 4.02445 sequence = CATGCGATTGAGACGCGAT Gene: Rru_A0838: TonB-dependent siderophore receptor |
Gene: Magn03005749: TonB-dependent siderophore receptor |
|
|
|
|
|
|
|
TonB-dependent siderophore receptor |
| CRON 27. | ||||||||||
| mcp |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -58 score = 4.4375 sequence = AATGCTATTGAATATCGAT Gene: Rru_A2321: Methyl-accepting chemotaxis protein |
Gene: Magn03007030: Methyl-accepting chemotaxis protein |
|
Gene: AZL_d03500: Methyl-accepting chemotaxis protein |
Gene: RC1_0344: Methyl-accepting chemotaxis protein |
|
|
|
|
Methyl-accepting chemotaxis protein |
| CRON 28. | ||||||||||
| mcp2 |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -126 score = 4.16186 sequence = AATGCTATTGATAATCGTT Gene: Rru_A1053: Methyl-accepting chemotaxis protein |
|
|
|
|
|
|
|
|
Methyl-accepting chemotaxis protein |
| CRON 29. | ||||||||||
| Rru_A1054 |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -118 score = 4.16186 sequence = AACGATTATCAATAGCATT Gene: Rru_A1054: Membrane protein involved in colicin uptake |
|
|
|
|
|
|
|
|
Membrane protein involved in colicin uptake |
| CRON 30. | ||||||||||
| Rru_A0879 |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -98 score = 5.38826 sequence = ATTGCAAATGACTTGCAAT Gene: Rru_A0879: Transcriptional regulator, AraC family |
|
|
|
|
|
|
|
|
Transcriptional regulator, AraC family |
| CRON 31. | ||||||||||
| GbCGDNIH1_2378 |
|
|
|
|
|
|
|
|
*
Granulibacter bethesdensis CGDNIH1 Site: position = -29 score = 4.75487 sequence = AATGAATATCAATTGCAAT Gene: GbCGDNIH1_2378: Siderophore synthetase large component, acetyltransferase |
Siderophore synthetase large component, acetyltransferase |
| GbCGDNIH1_2377 |
|
|
|
|
|
|
|
|
Gene: GbCGDNIH1_2377: Siderophore synthetase small component, acetyltransferase |
Siderophore synthetase small component, acetyltransferase |
| GbCGDNIH1_2376 |
|
|
|
|
|
|
|
|
Gene: GbCGDNIH1_2376: Siderophore synthetase component, ligase |
Siderophore synthetase component, ligase |
| iucD |
|
|
|
|
|
|
|
|
Gene: GbCGDNIH1_2375: Siderophore biosynthesis protein, monooxygenase |
Siderophore biosynthesis protein, monooxygenase |
| CRON 32. | ||||||||||
| Rru_A1459 |
Gene: Rru_A1459: Major facilitator superfamily MFS_1 |
|
|
|
|
|
|
|
*
Granulibacter bethesdensis CGDNIH1 Site: position = -36 score = 4.75487 sequence = ATTGCAATTGATATTCATT Gene: GbCGDNIH1_2379: Major facilitator superfamily MFS_1 |
Major facilitator superfamily MFS_1 |
| fhuF |
|
|
|
|
|
|
|
|
Gene: GbCGDNIH1_2380: Ferric reductase (1.6.99.14) |
Ferric reductase (1.6.99.14) |
| CRON 33. | ||||||||||
| omp11 |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -130 score = 4.24378 sequence = TATGATAATAAGAAGCATT Gene: Rru_A0845: TonB-dependent siderophore receptor |
|
|
|
|
|
|
|
|
TonB-dependent siderophore receptor |
| ftpB |
Gene: Rru_A0846: Hypothetical protein FtpB in pyochelin gene cluster |
|
|
|
|
|
|
|
|
Hypothetical protein FtpB in pyochelin gene cluster |
| Rru_A0847 |
Gene: Rru_A0847: PepSY-associated TM helix domain protein |
|
|
Gene: AZL_a07730: PepSY-associated TM helix domain protein |
|
|
|
|
|
PepSY-associated TM helix domain protein |
| CRON 34. | ||||||||||
| bfd |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -75 score = 5.18461 sequence = AATGCGATTGACTTGCAAA Gene: Rru_A2196: Bacterioferritin-associated ferredoxin |
*
Magnetospirillum magnetotacticum MS-1 Site: position = -50 score = 4.82125 sequence = GTTGCGACTGATTATCATA Gene: Magn03008031: Bacterioferritin-associated ferredoxin |
|
*
Azospirillum sp. B510 Site: position = -101 score = 4.92993 sequence = TATGCGATTGGTTCGCAAC Site: position = -76 score = 4.20473 sequence = GTTGACAACGATTCTCACT Gene: AZL_011850: Bacterioferritin-associated ferredoxin |
*
Rhodospirillum centenum SW Site: position = -57 score = 5.05141 sequence = GCTGCGATTGATTTGCATT Gene: RC1_3427: Bacterioferritin-associated ferredoxin |
|
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -69 score = 5.23082 sequence = ATTGCGATTCATTCTTATT Gene: APA01_04500: Bacterioferritin-associated ferredoxin |
|
|
Bacterioferritin-associated ferredoxin |
| bfr |
Gene: Rru_A2195: Bacterioferritin |
|
|
|
|
|
|
|
|
Bacterioferritin |
| CRON 35. | ||||||||||
| fecI |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -58 score = 5.19701 sequence = TTTGCGAATAATTCTCAAA Gene: Rru_A1438: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|
|
|
|
|
|
|
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
| fecR |
Gene: Rru_A1439: Fe2+-dicitrate sensor, membrane component |
|
|
|
|
|
|
|
|
Fe2+-dicitrate sensor, membrane component |
| omp18 |
Gene: Rru_A1440: TonB-dependent siderophore receptor |
|
|
|
|
|
|
|
|
TonB-dependent siderophore receptor |
| CRON 36. | ||||||||||
| mtrB |
|
|
*
Magnetospirillum magneticum AMB-1 Site: position = -40 score = 4.7597 sequence = ATTGCGATTACGTCTCATT Gene: amb3018: Decahaem-associated outer membrane protein |
|
|
|
|
|
|
Decahaem-associated outer membrane protein |
| CRON 37. | ||||||||||
| omp17 |
|
|
|
|
*
Rhodospirillum centenum SW Site: position = -149 score = 5.54645 sequence = AATGCGAACAACTCGCATT Gene: RC1_3856: TonB-dependent siderophore receptor |
|
|
|
|
TonB-dependent siderophore receptor |
| RC1_3857 |
|
|
|
|
Gene: RC1_3857: Hypothetical protein |
|
|
|
|
Hypothetical protein |
| hmuS |
|
|
|
|
Gene: RC1_3858: Hemin transport protein HmuS |
|
|
|
|
Hemin transport protein HmuS |
| hmuT |
|
|
|
|
Gene: RC1_3859: Hemin-binding periplasmic protein HmuT precursor, putative |
|
|
|
|
Hemin-binding periplasmic protein HmuT precursor, putative |
| hmuU |
|
Gene: Magn03004387: Hemin transport system permease protein HmuU, putative |
|
|
Gene: RC1_3860: Hemin transport system permease protein HmuU, putative |
|
|
|
|
Hemin transport system permease protein HmuU, putative |
| hmuV |
|
Gene: Magn03001320: Hemin transport system ATP-binding protein HmuV, putative |
|
|
Gene: RC1_3861: Hemin transport system ATP-binding protein HmuV, putative |
|
|
|
|
Hemin transport system ATP-binding protein HmuV, putative |
| CRON 38. | ||||||||||
| Magn03008131 |
|
Gene: Magn03008131: Predicted iron-dependent peroxidase, Dyp-type family |
Gene: amb0705: Predicted iron-dependent peroxidase, Dyp-type family |
|
|
Gene: Gdia_1591: Predicted iron-dependent peroxidase, Dyp-type family |
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -143 score = 4.37687 sequence = AATGCTATGAATACGCATT Gene: APA01_21510: Predicted iron-dependent peroxidase, Dyp-type family |
Gene: GOX0528: Predicted iron-dependent peroxidase, Dyp-type family |
|
Predicted iron-dependent peroxidase, Dyp-type family |
| Rru_A0974 |
Gene: Rru_A0974: Encapsulating protein for a DyP-type peroxidase or ferritin-like protein oligomers |
|
|
|
|
Gene: Gdia_1590: Encapsulating protein for a DyP-type peroxidase or ferritin-like protein oligomers |
Gene: APA01_21520: Encapsulating protein for a DyP-type peroxidase or ferritin-like protein oligomers |
|
|
Encapsulating protein for a DyP-type peroxidase or ferritin-like protein oligomers |
| CRON 39. | ||||||||||
| mcp3 |
|
*
Magnetospirillum magnetotacticum MS-1 Site: position = -91 score = 5.05387 sequence = TTTGCTATTGACTCGCAAT Gene: Magn03010302: Methyl-accepting chemotaxis protein |
|
|
|
|
|
|
|
Methyl-accepting chemotaxis protein |
| CRON 40. | ||||||||||
| fcuA |
|
|
|
|
*
Rhodospirillum centenum SW Site: position = -90 score = 3.62076 sequence = TATGCAATTTAGAAGCGTT Gene: RC1_3892: TonB-dependent siderophore receptor |
|
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -62 score = 4.18718 sequence = CTTGCAATTTATTCTTAGT Gene: APA01_15330: TonB-dependent siderophore receptor |
*
Gluconobacter oxydans 621H Site: position = -61 score = 5.53945 sequence = GTTGCGAATAACTCGCATT Gene: GOX1417: TonB-dependent siderophore receptor |
|
TonB-dependent siderophore receptor |
| RC1_3893 |
|
|
|
|
Gene: RC1_3893: Hypothetical protein |
|
|
|
|
Hypothetical protein |
| COG3182 |
|
|
|
|
Gene: RC1_3894: PepSY-associated TM helix domain protein |
|
|
|
|
PepSY-associated TM helix domain protein |
| CRON 41. | ||||||||||
| cysG |
Gene: Rru_A1933: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
|
|
|
|
|
|
|
*
Granulibacter bethesdensis CGDNIH1 Site: position = -177 score = 4.26116 sequence = AATGAGATAAATTCTCTTT Gene: GbCGDNIH1_0735: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
| CRON 42. | ||||||||||
| omp16 |
|
|
|
|
*
Rhodospirillum centenum SW Site: position = -68 score = 5.56231 sequence = ATTGCGAATCGCTCGCATT Gene: RC1_3980: TonB-dependent siderophore receptor |
|
|
|
|
TonB-dependent siderophore receptor |
| CRON 43. | ||||||||||
| Gdia_0995 |
|
|
|
|
|
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -42 score = 5.03704 sequence = TATGCAAGTAACTTGCATT Gene: Gdia_0995: Short-chain dehydrogenase/reductase |
|
|
|
Short-chain dehydrogenase/reductase |
| CRON 44. | ||||||||||
| omp15 |
|
|
|
*
Azospirillum sp. B510 Site: position = -31 score = 4.48569 sequence = AACGCGATTGATTCTGAAT Site: position = -25 score = 4.32898 sequence = ATTGATTCTGAATCGCATA Gene: AZL_a07740: TonB-dependent siderophore receptor |
|
|
|
|
|
TonB-dependent siderophore receptor |
| CRON 45. | ||||||||||
| fecI3 |
|
|
|
|
*
Rhodospirillum centenum SW Site: position = -68 score = 4.5667 sequence = CTTGATAATGCCTCGCATT Gene: RC1_3812: Sigma factor, ECF subfamily |
|
|
|
|
Sigma factor, ECF subfamily |
| fecR4 |
|
|
|
|
Gene: RC1_3811: Fe2+-dicitrate sensor, membrane component |
|
|
|
|
Fe2+-dicitrate sensor, membrane component |
| omp14 |
|
|
|
|
Gene: RC1_3810: TonB-dependent siderophore receptor |
|
|
|
|
TonB-dependent siderophore receptor |
| piuB |
|
|
|
|
Gene: RC1_3809: Iron-uptake factor PiuB |
|
|
|
|
Iron-uptake factor PiuB |
| CRON 46. | ||||||||||
| Rru_A0769 |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -76 score = 4.54074 sequence = TCTGCGTTTCATTCTCAAT Gene: Rru_A0769: Ferric iron ABC transporter, iron-binding protein |
|
|
|
|
|
|
|
|
Ferric iron ABC transporter, iron-binding protein |
| CRON 47. | ||||||||||
| Magn03011341 |
|
*
Magnetospirillum magnetotacticum MS-1 Site: position = -128 score = 5.10211 sequence = TTTGCGATCAATTCGCATT Gene: Magn03011341: Fe-S oxidoreductase |
|
|
|
|
|
|
|
Fe-S oxidoreductase |
| Magn03011342 |
|
Gene: Magn03011342: Predicted Fe-S oxidoreductases |
|
|
|
|
|
|
|
Predicted Fe-S oxidoreductases |
| CRON 48. | ||||||||||
| mntX |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -74 score = 4.72798 sequence = ATTAAGAATGAATTGCATA Gene: Rru_A3164: Predicted manganese transporter |
|
|
|
|
|
|
|
|
Predicted manganese transporter |
| CRON 49. | ||||||||||
| omp13 |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -53 score = 4.98583 sequence = CATGCGAACAAGTCGCATT Gene: Rru_A2395: TonB-dependent siderophore receptor |
|
|
|
|
|
|
|
|
TonB-dependent siderophore receptor |
| Rru_A2394 |
Gene: Rru_A2394: PepSY-associated TM helix domain protein |
|
|
|
|
|
|
|
|
PepSY-associated TM helix domain protein |
| Rru_A2393 |
Gene: Rru_A2393: Hypothetical protein |
|
|
|
|
|
|
|
|
Hypothetical protein |
| Rru_A2392 |
Gene: Rru_A2392: Hypothetical protein |
|
|
|
|
|
|
|
|
Hypothetical protein |
| Rru_A2391 |
Gene: Rru_A2391: Hypothetical protein |
|
|
|
|
|
|
|
|
Hypothetical protein |
| Rru_A2390 |
Gene: Rru_A2390: Manganese-binding protein |
|
|
|
|
|
|
|
|
Manganese-binding protein |
| Rru_A2389 |
Gene: Rru_A2389: ABC transporter ATP-binding protein |
|
|
|
|
|
|
|
|
ABC transporter ATP-binding protein |
| mntB |
Gene: Rru_A2388: Manganese transport system membrane protein mntB |
|
|
|
|
|
|
|
|
Manganese transport system membrane protein mntB |
| Rru_A2387 |
Gene: Rru_A2387: ABC-type metal ion transport system, periplasmic component/surface adhesin |
|
|
|
|
|
|
|
|
ABC-type metal ion transport system, periplasmic component/surface adhesin |
| CRON 50. | ||||||||||
| GbCGDNIH1_0620 |
|
|
|
|
|
|
|
|
*
Granulibacter bethesdensis CGDNIH1 Site: position = -235 score = 4.1744 sequence = ATTGATAATCATTATTAGA Site: position = -171 score = 2.96281 sequence = AAAGATATTACAGTTCATT Gene: GbCGDNIH1_0620: Hypothetical protein |
Hypothetical protein |
| omp12 |
|
|
|
|
|
|
|
|
Gene: GbCGDNIH1_0619: TonB-dependent siderophore receptor |
TonB-dependent siderophore receptor |
| CRON 51. | ||||||||||
| fecI3 |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -103 score = 4.92898 sequence = AATGATAGTCGTTCGCAAA Gene: Rru_A2397: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|
|
|
|
|
*2
Acetobacter pasteurianus IFO 3283-01 Site: position = -60 score = 4.63648 sequence = ATTAAGAATGAGTTGCATA Gene: APA01_13610: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Site: position = -270 score = 4.4038 sequence = ATTAAGAAGTAATCTCAAT Gene: APA01_15880: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
| fecR3 |
Gene: Rru_A2396: Fe2+-dicitrate sensor, membrane component |
|
|
|
|
|
2
Acetobacter pasteurianus IFO 3283-01 Gene: APA01_15870: Fe2+-dicitrate sensor, membrane component Gene: APA01_13600: Fe2+-dicitrate sensor, membrane component |
|
|
Fe2+-dicitrate sensor, membrane component |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |