Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NtrC - Caulobacterales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 15 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Caulobacter crescentus CB15 15 4
Caulobacter segnis ATCC 21756 8 2
Caulobacter sp. K31 15 4
Phenylobacterium zucineum HLK1 9 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nifR3
*
Caulobacter crescentus CB15

Site:
position = -70
score = 4.57804
sequence = TGATTACAAAATGAGCA

Gene: CC1739: Nitrogen assimilation transcriptional regulator NtrX, Fis family
*
Caulobacter segnis ATCC 21756

Site:
position = -10
score = 5.1212
sequence = TGATCATAAAATGAGCA

Gene: Cseg_1980: Nitrogen assimilation transcriptional regulator NtrX, Fis family
*
Caulobacter sp. K31

Site:
position = -10
score = 4.87497
sequence = TGCATATAAAATGAGCA

Gene: Caul_2604: Nitrogen assimilation transcriptional regulator NtrX, Fis family
*
Phenylobacterium zucineum HLK1

Site:
position = -10
score = 4.57804
sequence = TGATTAGAAAATGAGCA

Gene: PHZ_c1732: Nitrogen assimilation transcriptional regulator NtrX, Fis family
Nitrogen assimilation transcriptional regulator NtrX, Fis family
ntrB
 
Caulobacter crescentus CB15

Gene: CC1740: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Caulobacter segnis ATCC 21756

Gene: Cseg_1981: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Caulobacter sp. K31

Gene: Caul_2605: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c1731: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
 
Caulobacter crescentus CB15

Gene: CC1741: Nitrogen regulation protein NR(I), Fis family
 
Caulobacter segnis ATCC 21756

Gene: Cseg_1982: Nitrogen regulation protein NR(I), Fis family
 
Caulobacter sp. K31

Gene: Caul_2606: Nitrogen regulation protein NR(I), Fis family
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c1730: Nitrogen regulation protein NR(I), Fis family
Nitrogen regulation protein NR(I), Fis family
ntrY
 
Caulobacter crescentus CB15

Gene: CC1742: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Caulobacter segnis ATCC 21756

Gene: Cseg_1983: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Caulobacter sp. K31

Gene: Caul_2607: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c1729: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
ntrX
 
Caulobacter crescentus CB15

Gene: CC1743: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Caulobacter segnis ATCC 21756

Gene: Cseg_1984: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Caulobacter sp. K31

Gene: Caul_2608: Nitrogen assimilation transcriptional regulator NtrX, Fis family
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c1728: Nitrogen assimilation transcriptional regulator NtrX, Fis family
Nitrogen assimilation transcriptional regulator NtrX, Fis family
dat
 
Caulobacter crescentus CB15

Gene: CC1744: D-alanine aminotransferase (EC 2.6.1.21)
 
Caulobacter segnis ATCC 21756

Gene: Cseg_1985: D-alanine aminotransferase (EC 2.6.1.21)
 
Caulobacter sp. K31

Gene: Caul_2609: D-alanine aminotransferase (EC 2.6.1.21)
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c1727: D-alanine aminotransferase (EC 2.6.1.21)
D-alanine aminotransferase (EC 2.6.1.21)
 
CRON 2.
glnK
*
Caulobacter crescentus CB15

Site:
position = -208
score = 4.81809
sequence = CGCTCAACTTTTGGGCG

Gene: CC1339: nitrogen regulatory protein P-II
*
Caulobacter segnis ATCC 21756

Site:
position = -206
score = 4.91382
sequence = CGCTCAAAAATTAGGCG

Gene: Cseg_1636: nitrogen regulatory protein P-II
*
Caulobacter sp. K31

Site:
position = -201
score = 4.92962
sequence = CGCCCAATATTTGGGCG

Gene: Caul_2171: nitrogen regulatory protein P-II
*
Phenylobacterium zucineum HLK1

Site:
position = -211
score = 4.03919
sequence = TGCACAGAAATCGGGCG

Gene: PHZ_c1361: nitrogen regulatory protein P-II
nitrogen regulatory protein P-II
amtB
 
Caulobacter crescentus CB15

Gene: CC1338: Ammonium transporter
 
Caulobacter segnis ATCC 21756

Gene: Cseg_1635: Ammonium transporter
 
Caulobacter sp. K31

Gene: Caul_2170: Ammonium transporter
 
Phenylobacterium zucineum HLK1
Ammonium transporter
 
CRON 3.
glnB
*
Caulobacter crescentus CB15

Site:
position = -141
score = 4.10729
sequence = CGCCTAGTTTTTAATCA

Gene: CC1968: Nitrogen regulatory protein P-II
 
Caulobacter segnis ATCC 21756

Gene: Cseg_2256: Nitrogen regulatory protein P-II
*
Caulobacter sp. K31

Site:
position = -141
score = 4.25333
sequence = TGCTCAAATTCCAGGCA

Gene: Caul_2852: Nitrogen regulatory protein P-II
*
Phenylobacterium zucineum HLK1

Site:
position = -140
score = 4.06663
sequence = CGCCCATTCCTTAGGCG

Gene: PHZ_c1573: Nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II
glnA
 
Caulobacter crescentus CB15

Gene: CC1969: Glutamine synthetase type I (EC 6.3.1.2)
 
Caulobacter segnis ATCC 21756

Gene: Cseg_2257: Glutamine synthetase type I (EC 6.3.1.2)
 
Caulobacter sp. K31

Gene: Caul_2853: Glutamine synthetase type I (EC 6.3.1.2)
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c1572: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
 
CRON 4.
narK
*
Caulobacter crescentus CB15

Site:
position = -31
score = 4.77258
sequence = TGCTAAAATCTTGAGCG

Site:
position = -7
score = 4.67192
sequence = CGCTCATTTGCTGAGCA

Gene: CC0614: Nitrate/nitrite antiporter
 
Caulobacter segnis ATCC 21756

Gene: Cseg_2059: Nitrate/nitrite antiporter
*
Caulobacter sp. K31

Site:
position = -235
score = 4.06287
sequence = TGCTCATGCATCGTGCA

Site:
position = -211
score = 3.83461
sequence = TGCCTGTTTGCTGAGCA

Gene: Caul_2957: Nitrate/nitrite antiporter
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c0968: Nitrate/nitrite antiporter
Nitrate/nitrite antiporter
nasD
 
Caulobacter crescentus CB15

Gene: CC0615: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Caulobacter segnis ATCC 21756

Gene: Cseg_2058: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Caulobacter sp. K31

Gene: Caul_2956: Nitrite reductase, large subunit (EC 1.7.1.4)
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c0969: Nitrite reductase, large subunit (EC 1.7.1.4)
Nitrite reductase, large subunit (EC 1.7.1.4)
nasE
 
Caulobacter crescentus CB15

Gene: CC0616: Nitrite reductase, large subunit (EC 1.7.1.4) Nitrite reductase, small subunit (EC 1.7.1.4)
 
Caulobacter segnis ATCC 21756

Gene: Cseg_2057: Nitrite reductase, large subunit (EC 1.7.1.4) Nitrite reductase, small subunit (EC 1.7.1.4)
 
Caulobacter sp. K31

Gene: Caul_2955: Nitrite reductase, large subunit (EC 1.7.1.4) Nitrite reductase, small subunit (EC 1.7.1.4)
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c0970: Nitrite reductase, large subunit (EC 1.7.1.4) Nitrite reductase, small subunit (EC 1.7.1.4)
Nitrite reductase, large subunit (EC 1.7.1.4) Nitrite reductase, small subunit (EC 1.7.1.4)
nasA
 
Caulobacter crescentus CB15

Gene: CC0617: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Caulobacter segnis ATCC 21756

Gene: Cseg_2056: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Caulobacter sp. K31

Gene: Caul_2954: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c0971: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
cysG
 
Caulobacter crescentus CB15

Gene: CC0618: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
 
Caulobacter segnis ATCC 21756

Gene: Cseg_2055: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
 
Caulobacter sp. K31

Gene: Caul_2953: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c0972: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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