Regulog NtrC - Caulobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 15 sites [see more]

Member of regulog collections

By taxonomy - Caulobacterales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Statistics of regulated genes
Genome	Genes	Operons
Caulobacter crescentus CB15	15	4
Caulobacter segnis ATCC 21756	8	2
Caulobacter sp. K31	15	4
Phenylobacterium zucineum HLK1	9	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
nifR3	* Caulobacter crescentus CB15 Site: position = -70 score = 4.57804 sequence = TGATTACAAAATGAGCA Gene: CC1739: Nitrogen assimilation transcriptional regulator NtrX, Fis family	* Caulobacter segnis ATCC 21756 Site: position = -10 score = 5.1212 sequence = TGATCATAAAATGAGCA Gene: Cseg_1980: Nitrogen assimilation transcriptional regulator NtrX, Fis family	* Caulobacter sp. K31 Site: position = -10 score = 4.87497 sequence = TGCATATAAAATGAGCA Gene: Caul_2604: Nitrogen assimilation transcriptional regulator NtrX, Fis family	* Phenylobacterium zucineum HLK1 Site: position = -10 score = 4.57804 sequence = TGATTAGAAAATGAGCA Gene: PHZ_c1732: Nitrogen assimilation transcriptional regulator NtrX, Fis family	Nitrogen assimilation transcriptional regulator NtrX, Fis family
ntrB	Caulobacter crescentus CB15 Gene: CC1740: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Caulobacter segnis ATCC 21756 Gene: Cseg_1981: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Caulobacter sp. K31 Gene: Caul_2605: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Phenylobacterium zucineum HLK1 Gene: PHZ_c1731: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC	Caulobacter crescentus CB15 Gene: CC1741: Nitrogen regulation protein NR(I), Fis family	Caulobacter segnis ATCC 21756 Gene: Cseg_1982: Nitrogen regulation protein NR(I), Fis family	Caulobacter sp. K31 Gene: Caul_2606: Nitrogen regulation protein NR(I), Fis family	Phenylobacterium zucineum HLK1 Gene: PHZ_c1730: Nitrogen regulation protein NR(I), Fis family	Nitrogen regulation protein NR(I), Fis family
ntrY	Caulobacter crescentus CB15 Gene: CC1742: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)	Caulobacter segnis ATCC 21756 Gene: Cseg_1983: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)	Caulobacter sp. K31 Gene: Caul_2607: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)	Phenylobacterium zucineum HLK1 Gene: PHZ_c1729: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)	Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
ntrX	Caulobacter crescentus CB15 Gene: CC1743: Nitrogen assimilation transcriptional regulator NtrX, Fis family	Caulobacter segnis ATCC 21756 Gene: Cseg_1984: Nitrogen assimilation transcriptional regulator NtrX, Fis family	Caulobacter sp. K31 Gene: Caul_2608: Nitrogen assimilation transcriptional regulator NtrX, Fis family	Phenylobacterium zucineum HLK1 Gene: PHZ_c1728: Nitrogen assimilation transcriptional regulator NtrX, Fis family	Nitrogen assimilation transcriptional regulator NtrX, Fis family
dat	Caulobacter crescentus CB15 Gene: CC1744: D-alanine aminotransferase (EC 2.6.1.21)	Caulobacter segnis ATCC 21756 Gene: Cseg_1985: D-alanine aminotransferase (EC 2.6.1.21)	Caulobacter sp. K31 Gene: Caul_2609: D-alanine aminotransferase (EC 2.6.1.21)	Phenylobacterium zucineum HLK1 Gene: PHZ_c1727: D-alanine aminotransferase (EC 2.6.1.21)	D-alanine aminotransferase (EC 2.6.1.21)

CRON 2.
glnK	* Caulobacter crescentus CB15 Site: position = -208 score = 4.81809 sequence = CGCTCAACTTTTGGGCG Gene: CC1339: nitrogen regulatory protein P-II	* Caulobacter segnis ATCC 21756 Site: position = -206 score = 4.91382 sequence = CGCTCAAAAATTAGGCG Gene: Cseg_1636: nitrogen regulatory protein P-II	* Caulobacter sp. K31 Site: position = -201 score = 4.92962 sequence = CGCCCAATATTTGGGCG Gene: Caul_2171: nitrogen regulatory protein P-II	* Phenylobacterium zucineum HLK1 Site: position = -211 score = 4.03919 sequence = TGCACAGAAATCGGGCG Gene: PHZ_c1361: nitrogen regulatory protein P-II	nitrogen regulatory protein P-II
amtB	Caulobacter crescentus CB15 Gene: CC1338: Ammonium transporter	Caulobacter segnis ATCC 21756 Gene: Cseg_1635: Ammonium transporter	Caulobacter sp. K31 Gene: Caul_2170: Ammonium transporter	Phenylobacterium zucineum HLK1	Ammonium transporter

CRON 3.
glnB	* Caulobacter crescentus CB15 Site: position = -141 score = 4.10729 sequence = CGCCTAGTTTTTAATCA Gene: CC1968: Nitrogen regulatory protein P-II	Caulobacter segnis ATCC 21756 Gene: Cseg_2256: Nitrogen regulatory protein P-II	* Caulobacter sp. K31 Site: position = -141 score = 4.25333 sequence = TGCTCAAATTCCAGGCA Gene: Caul_2852: Nitrogen regulatory protein P-II	* Phenylobacterium zucineum HLK1 Site: position = -140 score = 4.06663 sequence = CGCCCATTCCTTAGGCG Gene: PHZ_c1573: Nitrogen regulatory protein P-II	Nitrogen regulatory protein P-II
glnA	Caulobacter crescentus CB15 Gene: CC1969: Glutamine synthetase type I (EC 6.3.1.2)	Caulobacter segnis ATCC 21756 Gene: Cseg_2257: Glutamine synthetase type I (EC 6.3.1.2)	Caulobacter sp. K31 Gene: Caul_2853: Glutamine synthetase type I (EC 6.3.1.2)	Phenylobacterium zucineum HLK1 Gene: PHZ_c1572: Glutamine synthetase type I (EC 6.3.1.2)	Glutamine synthetase type I (EC 6.3.1.2)

CRON 4.
narK	* Caulobacter crescentus CB15 Site: position = -31 score = 4.77258 sequence = TGCTAAAATCTTGAGCG Site: position = -7 score = 4.67192 sequence = CGCTCATTTGCTGAGCA Gene: CC0614: Nitrate/nitrite antiporter	Caulobacter segnis ATCC 21756 Gene: Cseg_2059: Nitrate/nitrite antiporter	* Caulobacter sp. K31 Site: position = -235 score = 4.06287 sequence = TGCTCATGCATCGTGCA Site: position = -211 score = 3.83461 sequence = TGCCTGTTTGCTGAGCA Gene: Caul_2957: Nitrate/nitrite antiporter	Phenylobacterium zucineum HLK1 Gene: PHZ_c0968: Nitrate/nitrite antiporter	Nitrate/nitrite antiporter
nasD	Caulobacter crescentus CB15 Gene: CC0615: Nitrite reductase, large subunit (EC 1.7.1.4)	Caulobacter segnis ATCC 21756 Gene: Cseg_2058: Nitrite reductase, large subunit (EC 1.7.1.4)	Caulobacter sp. K31 Gene: Caul_2956: Nitrite reductase, large subunit (EC 1.7.1.4)	Phenylobacterium zucineum HLK1 Gene: PHZ_c0969: Nitrite reductase, large subunit (EC 1.7.1.4)	Nitrite reductase, large subunit (EC 1.7.1.4)
nasE	Caulobacter crescentus CB15 Gene: CC0616: Nitrite reductase, large subunit (EC 1.7.1.4) Nitrite reductase, small subunit (EC 1.7.1.4)	Caulobacter segnis ATCC 21756 Gene: Cseg_2057: Nitrite reductase, large subunit (EC 1.7.1.4) Nitrite reductase, small subunit (EC 1.7.1.4)	Caulobacter sp. K31 Gene: Caul_2955: Nitrite reductase, large subunit (EC 1.7.1.4) Nitrite reductase, small subunit (EC 1.7.1.4)	Phenylobacterium zucineum HLK1 Gene: PHZ_c0970: Nitrite reductase, large subunit (EC 1.7.1.4) Nitrite reductase, small subunit (EC 1.7.1.4)	Nitrite reductase, large subunit (EC 1.7.1.4) Nitrite reductase, small subunit (EC 1.7.1.4)
nasA	Caulobacter crescentus CB15 Gene: CC0617: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Caulobacter segnis ATCC 21756 Gene: Cseg_2056: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Caulobacter sp. K31 Gene: Caul_2954: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Phenylobacterium zucineum HLK1 Gene: PHZ_c0971: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)	Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
cysG	Caulobacter crescentus CB15 Gene: CC0618: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Caulobacter segnis ATCC 21756 Gene: Cseg_2055: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Caulobacter sp. K31 Gene: Caul_2953: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Phenylobacterium zucineum HLK1 Gene: PHZ_c0972: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NtrC - Caulobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --