Regulog NrdR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 7 | 4 |
| Pseudomonas entomophila L48 | 3 | 3 |
| Pseudomonas putida KT2440 | 3 | 3 |
| Pseudomonas syringae pv. tomato str. DC3000 | 3 | 3 |
| Pseudomonas fluorescens Pf-5 | 3 | 3 |
| Pseudomonas mendocina ymp | 2 | 2 |
| Pseudomonas stutzeri A1501 | 6 | 3 |
| Azotobacter vinelandii AvOP | 3 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| nrdA |
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Pseudomonas aeruginosa PAO1 Site: position = -398 score = 4.8741 sequence = CCCCTATATCTTGGGT Site: position = -194 score = 5.0483 sequence = CCACTAGGTATTGTGT Gene: PA1156: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Pseudomonas entomophila L48 Site: position = -432 score = 3.38984 sequence = CCGCATTATCTTGTAT Site: position = -401 score = 5.44143 sequence = CCACTAGATGTTGGGT Gene: PSEEN1337: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Pseudomonas putida KT2440 Site: position = -428 score = 3.38984 sequence = CCGCATTATCTTGTAT Site: position = -397 score = 5.61153 sequence = CCACTAGATATAGGGG Gene: PP1179: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Pseudomonas syringae pv. tomato str. DC3000 Site: position = -352 score = 4.96218 sequence = ACCCTACATGTAGGGT Gene: PSPTO1671: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Pseudomonas fluorescens Pf-5 Site: position = -375 score = 4.57877 sequence = TCCCTATATCTAGGGT Gene: PFL_4476: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Pseudomonas mendocina ymp Site: position = -407 score = 5.12509 sequence = CCACCAGATATTGGGT Site: position = -214 score = 5.08567 sequence = CCACTATATGTAGTAG Gene: Pmen_3151: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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Pseudomonas stutzeri A1501 Site: position = -202 score = 5.21223 sequence = ACACAACATATTGTGT Site: position = -392 score = 5.12427 sequence = CCCCTAGATGTTGGGT Gene: PST_1637: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Azotobacter vinelandii AvOP Site: position = -163 score = 5.42064 sequence = CCACTAGATGTTGTGG Site: position = -352 score = 5.02149 sequence = CCCCTACATATAGGGA Gene: Avin_33290: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
Gene: PA1155: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
*
Pseudomonas entomophila L48 Site: position = -453 score = 4.27906 sequence = ACACCATATGCTGTGG Site: position = -422 score = 4.8414 sequence = ACACAACATATAGGAT Gene: PSEEN1335: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
*
Pseudomonas putida KT2440 Site: position = -343 score = 4.68858 sequence = GCACAACATATAGGTT Site: position = -375 score = 3.82803 sequence = ACACCATATGATGTGC Gene: PP1177: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -447 score = 4.38541 sequence = TCACTATATGCTGCGC Site: position = -415 score = 3.93729 sequence = ACACTACATAAGGGAT Gene: PSPTO1661: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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Pseudomonas fluorescens Pf-5 Site: position = -434 score = 4.06353 sequence = ACACAACATCTAGTAA Gene: PFL_4524: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Pmen_3152: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: PST_1636: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Avin_33300: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 2. | |||||||||
| topA |
*
Pseudomonas aeruginosa PAO1 Site: position = -76 score = 5.68694 sequence = CCACTATATATAGCGG Gene: PA3011: DNA topoisomerase I (EC 5.99.1.2) |
*
Pseudomonas entomophila L48 Site: position = -73 score = 5.68694 sequence = CCACTATATATAGCGG Gene: PSEEN3725: DNA topoisomerase I (EC 5.99.1.2) |
*
Pseudomonas putida KT2440 Site: position = -73 score = 5.68694 sequence = CCACTATATATAGCGG Gene: PP2139: DNA topoisomerase I (EC 5.99.1.2) |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -71 score = 5.68694 sequence = CCACTATATATAGCGT Gene: PSPTO3514: DNA topoisomerase I (EC 5.99.1.2) |
*
Pseudomonas fluorescens Pf-5 Site: position = -72 score = 5.68694 sequence = CCACTATATATAGCGG Gene: PFL_1942: DNA topoisomerase I (EC 5.99.1.2) |
*
Pseudomonas mendocina ymp Site: position = -69 score = 5.68694 sequence = CCACTATATATAGCGG Gene: Pmen_1583: DNA topoisomerase I (EC 5.99.1.2) |
*
Pseudomonas stutzeri A1501 Site: position = -241 score = 5.68694 sequence = CCACTATATATAGCGG Gene: PST_1729: DNA topoisomerase I (EC 5.99.1.2) |
*
Azotobacter vinelandii AvOP Site: position = -222 score = 5.39327 sequence = CCACTATATATAGCGC Gene: Avin_14470: DNA topoisomerase I (EC 5.99.1.2) |
DNA topoisomerase I (EC 5.99.1.2) |
| CRON 3. | |||||||||
| nrdD |
*
Pseudomonas aeruginosa PAO1 Site: position = -57 score = 5.10769 sequence = CCACAACATATTGTTG Site: position = -26 score = 4.53379 sequence = ACACATCATGTTGTGG Gene: PA1920: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Pseudomonas stutzeri A1501 Site: position = -58 score = 4.57793 sequence = TCACACCATATTGTGG Site: position = -27 score = 4.41333 sequence = ACACTACATATGGTTA Gene: PST_3509: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| PST_3508 |
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Gene: PST_3508: hypothetical protein |
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hypothetical protein |
| nrdG |
Gene: PA1919: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Gene: PST_3507: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
| CRON 4. | |||||||||
| nrdJb |
*
Pseudomonas aeruginosa PAO1 Site: position = -38 score = 4.5837 sequence = ACACAAGATATTGATT Site: position = -7 score = 4.62243 sequence = TAACTAGATGTTGCGT Gene: PA5497: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
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Gene: PST_0109: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Gene: Avin_00810: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
| nrdJa |
Gene: PA5496: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1) |
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Gene: PST_0110: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1) |
Gene: Avin_00800: Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class II (coenzyme B12-dependent), alpha subunit (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |