Regulog BirA - Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - BirA
- By TF family - BirA
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Pseudoalteromonas atlantica T6c | 5 | 2 |
| Alteromonas macleodii 'Deep ecotype' | 5 | 2 |
| Glaciecola sp. HTCC2999 | 5 | 2 |
| Colwellia psychrerythraea 34H | 5 | 2 |
| Alteromonadales bacterium TW-7 | 5 | 2 |
| Pseudoalteromonas haloplanktis TAC125 | 1 | 1 |
| Pseudoalteromonas tunicata D2 | 5 | 2 |
| Idiomarina baltica OS145 | 5 | 2 |
| Idiomarina loihiensis L2TR | 5 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| bioA |
*
Pseudoalteromonas atlantica T6c Site: position = -44 score = 7.61506 sequence = TTGTCAACT-(15)-ACTTTACAA Gene: Patl_2558: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -18 score = 6.89628 sequence = TTGTcAACt-(15)-ccTTTACcA Gene: MADE_02212: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Glaciecola sp. HTCC2999 Site: position = -44 score = 8.70579 sequence = TTGTCAACC-(15)-AGTTTACAA Gene: GHTCC_010100004703: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Colwellia psychrerythraea 34H Site: position = -33 score = 7.67587 sequence = ATGTCAACG-(15)-GGTTAACAA Gene: CPS_2593: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Alteromonadales bacterium TW-7 Site: position = -34 score = 8.02193 sequence = TTGTCAACG-(16)-AGTTTACAT Gene: ATW7_13078: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: PSHAa1610: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Pseudoalteromonas tunicata D2 Site: position = -34 score = 7.90934 sequence = TTGTCAACA-(16)-AGTTTACAT Gene: PTD2_19562: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Idiomarina baltica OS145 Site: position = -44 score = 6.809 sequence = CTGTCAATT-(15)-ACTTTACAA Gene: OS145_05987: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
*
Idiomarina loihiensis L2TR Site: position = -45 score = 6.61898 sequence = cTGTcAAta-(15)-acTTTACAA Gene: IL1325: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
| CRON 2. | ||||||||||
| bioB |
*
Pseudoalteromonas atlantica T6c Site: position = -87 score = 7.61506 sequence = TTGTAAAGT-(15)-AGTTGACAA Gene: Patl_2557: Biotin synthase (EC 2.8.1.6) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -86 score = 6.89628 sequence = TgGTAAAgg-(15)-aGTTgACAA Gene: MADE_02211: Biotin synthase (EC 2.8.1.6) |
*
Glaciecola sp. HTCC2999 Site: position = -92 score = 8.70579 sequence = TTGTAAACT-(15)-GGTTGACAA Gene: GHTCC_010100004698: Biotin synthase (EC 2.8.1.6) |
*
Colwellia psychrerythraea 34H Site: position = -87 score = 7.67587 sequence = TTGTTAACC-(15)-CGTTGACAT Gene: CPS_2594: Biotin synthase (EC 2.8.1.6) |
*
Alteromonadales bacterium TW-7 Site: position = -95 score = 8.02193 sequence = ATGTAAACT-(16)-CGTTGACAA Gene: ATW7_13073: Biotin synthase (EC 2.8.1.6) |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -99 score = 8.02193 sequence = ATGTAAACT-(16)-CGTTGACAA Gene: PSHAa1609: Biotin synthase (EC 2.8.1.6) |
*
Pseudoalteromonas tunicata D2 Site: position = -95 score = 7.90934 sequence = ATGTAAACT-(16)-TGTTGACAA Gene: PTD2_19567: Biotin synthase (EC 2.8.1.6) |
*
Idiomarina baltica OS145 Site: position = -95 score = 6.809 sequence = TTGTAAAGT-(15)-AATTGACAG Gene: OS145_05992: Biotin synthase (EC 2.8.1.6) |
*
Idiomarina loihiensis L2TR Site: position = -89 score = 6.61898 sequence = TTGTAAAgt-(15)-taTTgACAg Gene: IL1324: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| bioF |
Gene: Patl_2556: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: MADE_02210: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: GHTCC_010100004693: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: CPS_2595: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: ATW7_13068: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: PSHAa1608: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: PTD2_19572: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: OS145_05997: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: IL1323: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| bioC |
Gene: Patl_2555: Biotin biosynthesis protein BioC |
Gene: MADE_02209: Biotin biosynthesis protein BioC |
Gene: GHTCC_010100004688: Biotin biosynthesis protein BioC |
Gene: CPS_2596: Biotin biosynthesis protein BioC |
Gene: ATW7_13063: Biotin biosynthesis protein BioC |
Gene: PSHAa1607: Biotin biosynthesis protein BioC |
Gene: PTD2_19577: Biotin biosynthesis protein BioC |
Gene: OS145_06002: Biotin biosynthesis protein BioC |
Gene: IL1322: Biotin biosynthesis protein BioC |
Biotin biosynthesis protein BioC |
| bioD |
Gene: Patl_2554: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: MADE_02208: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: GHTCC_010100004683: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: CPS_2597: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: ATW7_13058: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: PSHAa1606: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: PTD2_19582: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: OS145_06007: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: IL1321: Dethiobiotin synthetase (EC 6.3.3.3) |
Dethiobiotin synthetase (EC 6.3.3.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |