Regulog FabR - Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid biosynthesis |
| Effector: | Unsaturated acyl-ACP; Unsaturated acyl-CoA |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - FabR
- By TF family - TetR
- By effector - Unsaturated acyl-ACP
- By effector - Unsaturated acyl-CoA
- By pathway - Fatty acid biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Pseudoalteromonas atlantica T6c | 4 | 4 |
| Alteromonas macleodii 'Deep ecotype' | 6 | 4 |
| Glaciecola sp. HTCC2999 | 5 | 4 |
| Colwellia psychrerythraea 34H | 2 | 2 |
| Alteromonadales bacterium TW-7 | 10 | 8 |
| Pseudoalteromonas haloplanktis TAC125 | 9 | 7 |
| Pseudoalteromonas tunicata D2 | 7 | 5 |
| Idiomarina baltica OS145 | 3 | 3 |
| Idiomarina loihiensis L2TR | 4 | 4 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| fadE |
Gene: Patl_1688: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: MADE_02616: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: GHTCC_010100000785: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|
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Alteromonadales bacterium TW-7 Site: position = -155 score = 6.10392 sequence = AGCGTACAGGTGTAAGCC Gene: ATW7_02937: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: PSHAb0374: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: PTD2_02811: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| CRON 2. | ||||||||||
| psrA |
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Gene: MADE_01897: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
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Gene: CPS_1586: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
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Idiomarina baltica OS145 Site: position = -69 score = 5.4473 sequence = AGCGAACACTTGATCGCT Gene: OS145_12684: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Idiomarina loihiensis L2TR Site: position = -72 score = 5.63873 sequence = AGCGAACACTTGCACGCT Gene: IL0918: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
| CRON 3. | ||||||||||
| fabB |
Gene: Patl_3383: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: MADE_01194: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: GHTCC_010100007637: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
*
Colwellia psychrerythraea 34H Site: position = -111 score = 5.83017 sequence = AGTGTACAAGTGTACGCT Gene: CPS_3807: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
*
Alteromonadales bacterium TW-7 Site: position = -93 score = 5.83017 sequence = AGAGTACAAGTGTACGCT Gene: ATW7_05551: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -93 score = 5.83017 sequence = AGAGTACAAGTGTACGCT Gene: PSHAa2080: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: PTD2_15422: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: OS145_12101: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: IL1021: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
| CRON 4. | ||||||||||
| hyIII |
*
Pseudoalteromonas atlantica T6c Site: position = -62 score = 5.63873 sequence = AGTGTACAAGTGTTCGCT Gene: Patl_3595: COG1272: Predicted membrane protein hemolysin III homolog |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -126 score = 5.67723 sequence = AGCGAACAAGTGTGCGCT Gene: MADE_03143: COG1272: Predicted membrane protein hemolysin III homolog |
|
Gene: CPS_0720: COG1272: Predicted membrane protein hemolysin III homolog |
*
Alteromonadales bacterium TW-7 Site: position = -48 score = 5.83017 sequence = AGCGTACACTTGTACACT Gene: ATW7_00075: COG1272: Predicted membrane protein hemolysin III homolog |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -47 score = 5.20586 sequence = AGCGTACACACGTACACT Gene: PSHAb0446: COG1272: Predicted membrane protein hemolysin III homolog |
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Gene: OS145_08998: COG1272: Predicted membrane protein hemolysin III homolog |
Gene: IL2439: COG1272: Predicted membrane protein hemolysin III homolog |
COG1272: Predicted membrane protein hemolysin III homolog |
| CRON 5. | ||||||||||
| OLE1 |
*
Pseudoalteromonas atlantica T6c Site: position = -40 score = 6.3191 sequence = AGCGTACAAGTGTAAGCT Gene: Patl_4032: Fatty acid desaturase (EC 1.14.19.1) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -30 score = 5.67533 sequence = AGCGAACAGATGTAAGCC Gene: MADE_03581: Fatty acid desaturase (EC 1.14.19.1) |
*
Glaciecola sp. HTCC2999 Site: position = -57 score = 6.3191 sequence = AGCTTACACTTGTACGCT Gene: GHTCC_010100010798: Fatty acid desaturase (EC 1.14.19.1) |
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Alteromonadales bacterium TW-7 Site: position = -31 score = 6.23286 sequence = AGCTTACAGTTGTACGCT Gene: ATW7_16877: Fatty acid desaturase (EC 1.14.19.1) |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -31 score = 6.23286 sequence = AGCTTACAGTTGTACGCT Gene: PSHAa2897: Fatty acid desaturase (EC 1.14.19.1) |
*
Pseudoalteromonas tunicata D2 Site: position = -30 score = 6.33114 sequence = AGCGTACAGTTGTACGCT Gene: PTD2_09622: Fatty acid desaturase (EC 1.14.19.1) |
*
Idiomarina baltica OS145 Site: position = -80 score = 6.12767 sequence = AGCGTACAAGTGTTAGCT Gene: OS145_02090: Fatty acid desaturase (EC 1.14.19.1) |
*
Idiomarina loihiensis L2TR Site: position = -59 score = 6.5312 sequence = AGCGTACAGGTGTACGCT Gene: IL0278: Fatty acid desaturase (EC 1.14.19.1) |
Fatty acid desaturase (EC 1.14.19.1) |
| CRON 6. | ||||||||||
| fabR |
*
Pseudoalteromonas atlantica T6c Site: position = -137 score = 6.3191 sequence = AGCTTACACTTGTACGCT Gene: Patl_4031: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
Gene: MADE_03580: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
*
Glaciecola sp. HTCC2999 Site: position = -62 score = 6.3191 sequence = AGCGTACAAGTGTAAGCT Gene: GHTCC_010100010803: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
Gene: CPS_0335: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
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Alteromonadales bacterium TW-7 Site: position = -113 score = 6.23286 sequence = AGCGTACAACTGTAAGCT Gene: ATW7_16882: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -113 score = 6.23286 sequence = AGCGTACAACTGTAAGCT Gene: PSHAa2896: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
*
Pseudoalteromonas tunicata D2 Site: position = -129 score = 6.33114 sequence = AGCGTACAACTGTACGCT Gene: PTD2_09617: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
*
Idiomarina baltica OS145 Site: position = -104 score = 6.12767 sequence = AGCTAACACTTGTACGCT Gene: OS145_02095: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
*
Idiomarina loihiensis L2TR Site: position = -112 score = 6.5312 sequence = AGCGTACACCTGTACGCT Gene: IL0277: Unsaturated fatty acid biosythesis repressor FabR, TetR family |
Unsaturated fatty acid biosythesis repressor FabR, TetR family |
| CRON 7. | ||||||||||
| fabA |
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Pseudoalteromonas atlantica T6c Site: position = -54 score = 6.13971 sequence = AGCGTACAACTGTTCGCT Gene: Patl_2009: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
|
*
Glaciecola sp. HTCC2999 Site: position = -53 score = 6.22595 sequence = AGCGTACAAGTGTTCGCT Gene: GHTCC_010100006274: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
*
Colwellia psychrerythraea 34H Site: position = -65 score = 5.24296 sequence = AGTGTACAAGCGTACGCT Gene: CPS_3274: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
*
Alteromonadales bacterium TW-7 Site: position = -54 score = 6.41738 sequence = AGCGTACAAGTGTACGCT Gene: ATW7_12758: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
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Pseudoalteromonas haloplanktis TAC125 Site: position = -54 score = 6.41738 sequence = AGCGTACAAGTGTACGCT Gene: PSHAa1491: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
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Pseudoalteromonas tunicata D2 Site: position = -53 score = 6.10261 sequence = AGCGTACATCTGTTCGCT Gene: PTD2_19707: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
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Idiomarina loihiensis L2TR Site: position = -59 score = 6.00214 sequence = GGCGTACAGTTGTACGCT Gene: IL1287: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
| CRON 8. | ||||||||||
| plsC |
Gene: Patl_1030: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -121 score = 5.28145 sequence = ATCGGACAAGTGTACGCT Gene: MADE_01586: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
*
Glaciecola sp. HTCC2999 Site: position = -141 score = 6.32772 sequence = AGCGTACACGTGTTAGCT Gene: GHTCC_010100001125: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
Gene: CPS_1016: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
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Alteromonadales bacterium TW-7 Site: position = -109 score = 6.13971 sequence = AGCGTACAGTTGTTCGCT Gene: ATW7_11946: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
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Pseudoalteromonas haloplanktis TAC125 Site: position = -92 score = 5.86866 sequence = AGCGTACACTTGTGCGCT Gene: PSHAa2584: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
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Pseudoalteromonas tunicata D2 Site: position = -79 score = 5.45342 sequence = GGCGTACAGTTGTGCGCT Gene: PTD2_08769: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
Gene: OS145_05885: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
Gene: IL1952: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) |
| rraB |
Gene: Patl_1031: Ribonuclease E inhibitor RraB |
Gene: MADE_01585: Ribonuclease E inhibitor RraB |
Gene: GHTCC_010100001130: Ribonuclease E inhibitor RraB |
Gene: CPS_1017: Ribonuclease E inhibitor RraB |
Gene: ATW7_11941: Ribonuclease E inhibitor RraB |
Gene: PSHAa2583: Ribonuclease E inhibitor RraB |
Gene: PTD2_08774: Ribonuclease E inhibitor RraB |
Gene: OS145_05880: Ribonuclease E inhibitor RraB |
Gene: IL1951: Ribonuclease E inhibitor RraB |
Ribonuclease E inhibitor RraB |
| CRON 9. | ||||||||||
| desC |
|
*
Alteromonas macleodii 'Deep ecotype' Site: position = -179 score = 5.77038 sequence = AGCTTACACTTGTGCGCT Site: position = -156 score = 6.33114 sequence = AGCGTACAACTGTACGCT Gene: MADE_02772: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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Alteromonadales bacterium TW-7 Site: position = -101 score = 5.89566 sequence = AGCGTACACTTGTAGGCT Site: position = -127 score = 5.86866 sequence = AGCGTACACTTGTGCGCT Gene: ATW7_07904: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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Pseudoalteromonas haloplanktis TAC125 Site: position = -133 score = 5.31243 sequence = GGCGCACACGTGTAAGCC Site: position = -160 score = 5.86866 sequence = AGCGTACACTTGTGCGCT Gene: PSHAa1268: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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Pseudoalteromonas tunicata D2 Site: position = -48 score = 4.95245 sequence = GACGTACACTTGTGCGCT Site: position = -22 score = 6.12767 sequence = AGCTAACACTTGTACGCT Gene: PTD2_10629: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
| desB |
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Gene: MADE_02773: Acyl-CoA delta-9-desaturase, DesB |
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Gene: ATW7_07899: Acyl-CoA delta-9-desaturase, DesB |
Gene: PSHAa1269: Acyl-CoA delta-9-desaturase, DesB |
Gene: PTD2_10634: Acyl-CoA delta-9-desaturase, DesB |
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Acyl-CoA delta-9-desaturase, DesB |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |