Regulog RhgR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | AraC |
| Regulation mode: | activator |
| Biological process: | Rhamnogalacturonides utilization |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - AraC
- By pathway - Rhamnogalacturonides utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 12 | 1 |
| Bacillus amyloliquefaciens FZB42 | ||
| Bacillus pumilus SAFR-032 | ||
| Bacillus licheniformis DSM 13 | 15 | 1 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus halodurans C-125 | ||
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 | 3 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| rhiL |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -99 score = 10.6037 sequence = CTCTGTTTTTT-(10)-CACTGTTTTTT Gene: BSU06970: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein |
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Bacillus licheniformis DSM 13 Site: position = -97 score = 10.7611 sequence = CTCTGTTTTTT-(10)-CTCTGTTTTTT Gene: BLi01368: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein |
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Gene: BH1117: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein |
Gene: ABC0394: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein |
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*
Paenibacillus sp. JDR-2 Site: position = -110 score = 9.22038 sequence = GTCTGTTTTTT-(10)-CACTGGTTATT Site: position = -89 score = 9.30361 sequence = CACTGGTTATT-(10)-CTCTCCTTTTT Gene: Pjdr2_3535: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein |
Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein |
| rhiF |
Gene: BSU06980: Putatuve rhamnogalacturonides ABC transporter, permease component 1 |
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Gene: BLi01369: Putatuve rhamnogalacturonides ABC transporter, permease component 1 |
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Gene: BH1118: Putatuve rhamnogalacturonides ABC transporter, permease component 1 |
Gene: ABC0395: Putatuve rhamnogalacturonides ABC transporter, permease component 1 |
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Gene: Pjdr2_3534: Putatuve rhamnogalacturonides ABC transporter, permease component 1 |
Putatuve rhamnogalacturonides ABC transporter, permease component 1 |
| rhiG |
Gene: BSU06990: Putatuve rhamnogalacturonides ABC transporter, permease component 2 |
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Gene: BLi01370: Putatuve rhamnogalacturonides ABC transporter, permease component 2 |
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Gene: BH1119: Putatuve rhamnogalacturonides ABC transporter, permease component 2 |
Gene: ABC0396: Putatuve rhamnogalacturonides ABC transporter, permease component 2 |
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Gene: Pjdr2_3533: Putatuve rhamnogalacturonides ABC transporter, permease component 2 |
Putatuve rhamnogalacturonides ABC transporter, permease component 2 |
| rhiN1 |
Gene: BSU07000: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Gene: BLi01371: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Gene: BH1120: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
| rhgR |
Gene: BSU07010: Transcriptional regulator of rhamnogalacturonan utilization, AraC family |
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Gene: BLi01372: Transcriptional regulator of rhamnogalacturonan utilization, AraC family |
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Gene: Pjdr2_4099: Transcriptional regulator of rhamnogalacturonan utilization, AraC family |
Transcriptional regulator of rhamnogalacturonan utilization, AraC family |
| yesT |
Gene: BSU07020: Rhamnogalacturonan acetylesterase |
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2
Bacillus licheniformis DSM 13 Gene: BLi01373: Rhamnogalacturonan acetylesterase Gene: BLi01378: Rhamnogalacturonan acetylesterase |
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Gene: BH1121: Rhamnogalacturonan acetylesterase |
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Rhamnogalacturonan acetylesterase |
| yesU |
Gene: BSU07030: Hypothetical protein |
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Gene: BLi01374: Hypothetical protein |
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Hypothetical protein |
| yesV |
Gene: BSU07040: Putative integral inner membrane component |
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Gene: BLi01375: Putative integral inner membrane component |
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Putative integral inner membrane component |
| yesW |
Gene: BSU07050: Predicted rhamnogalacturonan lyase in rhamnose utilization cluster |
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Gene: BLi01376: Predicted rhamnogalacturonan lyase in rhamnose utilization cluster |
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Predicted rhamnogalacturonan lyase in rhamnose utilization cluster |
| BLi01377 |
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Gene: BLi01377: Hypothetical protein |
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Hypothetical protein |
| yesX |
Gene: BSU07060: Predicted rhamnogalacturonan lyase in rhamnose utilization cluster |
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Gene: BLi01379: Predicted rhamnogalacturonan lyase in rhamnose utilization cluster |
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Predicted rhamnogalacturonan lyase in rhamnose utilization cluster |
| yghZ |
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Gene: BLi01380: Putative ion-channel protein |
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Putative ion-channel protein |
| yesY |
Gene: BSU07070: Possible rhamnogalacturan acetylesterase |
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Gene: BPUM_0776: Possible rhamnogalacturan acetylesterase |
Gene: BLi01381: Possible rhamnogalacturan acetylesterase |
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Possible rhamnogalacturan acetylesterase |
| yesZ |
Gene: BSU07080: Beta-galactosidase (EC 3.2.1.23) |
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Gene: BLi01382: Beta-galactosidase (EC 3.2.1.23) |
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Beta-galactosidase (EC 3.2.1.23) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |