Regulog RhgR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	AraC
Regulation mode:	activator
Biological process:	Rhamnogalacturonides utilization
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - AraC
By pathway - Rhamnogalacturonides utilization

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	12	1
Bacillus amyloliquefaciens FZB42
Bacillus pumilus SAFR-032
Bacillus licheniformis DSM 13	15	1
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
rhiL	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -99 score = 10.6037 sequence = CTCTGTTTTTT-(10)-CACTGTTTTTT Gene: BSU06970: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	* Bacillus licheniformis DSM 13 Site: position = -97 score = 10.7611 sequence = CTCTGTTTTTT-(10)-CTCTGTTTTTT Gene: BLi01368: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH1117: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein	Bacillus clausii KSM-K16 Gene: ABC0394: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -110 score = 9.22038 sequence = GTCTGTTTTTT-(10)-CACTGGTTATT Site: position = -89 score = 9.30361 sequence = CACTGGTTATT-(10)-CTCTCCTTTTT Gene: Pjdr2_3535: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein	Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
rhiF	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU06980: Putatuve rhamnogalacturonides ABC transporter, permease component 1	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi01369: Putatuve rhamnogalacturonides ABC transporter, permease component 1	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH1118: Putatuve rhamnogalacturonides ABC transporter, permease component 1	Bacillus clausii KSM-K16 Gene: ABC0395: Putatuve rhamnogalacturonides ABC transporter, permease component 1	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_3534: Putatuve rhamnogalacturonides ABC transporter, permease component 1	Putatuve rhamnogalacturonides ABC transporter, permease component 1
rhiG	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU06990: Putatuve rhamnogalacturonides ABC transporter, permease component 2	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi01370: Putatuve rhamnogalacturonides ABC transporter, permease component 2	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH1119: Putatuve rhamnogalacturonides ABC transporter, permease component 2	Bacillus clausii KSM-K16 Gene: ABC0396: Putatuve rhamnogalacturonides ABC transporter, permease component 2	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_3533: Putatuve rhamnogalacturonides ABC transporter, permease component 2	Putatuve rhamnogalacturonides ABC transporter, permease component 2
rhiN1	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU07000: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi01371: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH1120: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
rhgR	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU07010: Transcriptional regulator of rhamnogalacturonan utilization, AraC family	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi01372: Transcriptional regulator of rhamnogalacturonan utilization, AraC family	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_4099: Transcriptional regulator of rhamnogalacturonan utilization, AraC family	Transcriptional regulator of rhamnogalacturonan utilization, AraC family
yesT	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU07020: Rhamnogalacturonan acetylesterase	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	2 Bacillus licheniformis DSM 13 Gene: BLi01373: Rhamnogalacturonan acetylesterase Gene: BLi01378: Rhamnogalacturonan acetylesterase	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH1121: Rhamnogalacturonan acetylesterase	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Rhamnogalacturonan acetylesterase
yesU	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU07030: Hypothetical protein	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi01374: Hypothetical protein	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Hypothetical protein
yesV	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU07040: Putative integral inner membrane component	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi01375: Putative integral inner membrane component	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative integral inner membrane component
yesW	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU07050: Predicted rhamnogalacturonan lyase in rhamnose utilization cluster	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi01376: Predicted rhamnogalacturonan lyase in rhamnose utilization cluster	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Predicted rhamnogalacturonan lyase in rhamnose utilization cluster
BLi01377	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi01377: Hypothetical protein	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Hypothetical protein
yesX	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU07060: Predicted rhamnogalacturonan lyase in rhamnose utilization cluster	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi01379: Predicted rhamnogalacturonan lyase in rhamnose utilization cluster	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Predicted rhamnogalacturonan lyase in rhamnose utilization cluster
yghZ	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi01380: Putative ion-channel protein	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative ion-channel protein
yesY	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU07070: Possible rhamnogalacturan acetylesterase	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032 Gene: BPUM_0776: Possible rhamnogalacturan acetylesterase	Bacillus licheniformis DSM 13 Gene: BLi01381: Possible rhamnogalacturan acetylesterase	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Possible rhamnogalacturan acetylesterase
yesZ	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU07080: Beta-galactosidase (EC 3.2.1.23)	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi01382: Beta-galactosidase (EC 3.2.1.23)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Beta-galactosidase (EC 3.2.1.23)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RhgR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --