Regulog YiaJ - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	IclR
Regulation mode:	repressor
Biological process:	L-lyxose utilization
Effector:	Ascorbate-6-phosphate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By TF family - IclR
By effector - Ascorbate-6-phosphate
By pathway - L-lyxose utilization

Statistics of regulated genes
Genome	Genes	Operons
Escherichia coli str. K-12 substr. MG1655	10	2
Salmonella typhimurium LT2	11	2
Citrobacter koseri ATCC BAA-895	6	2
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Enterobacter sp. 638
Erwinia amylovora ATCC 49946
Yersinia pestis KIM
Serratia proteamaculans 568	8	2
Erwinia carotovora subsp. atroseptica SCRI1043
Edwardsiella tarda EIB202
Proteus mirabilis HI4320
Photorhabdus luminescens subsp. laumondii TTO1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
yiaJ	* Escherichia coli str. K-12 substr. MG1655 Site: position = -151 score = 6.32152 sequence = ATGCGAAACTTGATTTCAAAT Gene: b3574: transcriptional regulator of L-lyxose catabolism, IclR family	* Salmonella typhimurium LT2 Site: position = -168 score = 6.19118 sequence = ATGCGAAATCTAGTTCCAAAT Gene: STM3667: transcriptional regulator of L-lyxose catabolism, IclR family	* Citrobacter koseri ATCC BAA-895 Site: position = -167 score = 6.54484 sequence = ATGCGAAATCTGATTTCAAAT Gene: CKO_05032: transcriptional regulator of L-lyxose catabolism, IclR family	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	* Serratia proteamaculans 568 Site: position = -287 score = 6.1361 sequence = ATGCGAAATTCAATTTCAAAA Gene: Spro_3928: transcriptional regulator of L-lyxose catabolism, IclR family	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	transcriptional regulator of L-lyxose catabolism, IclR family

CRON 2.
yiaK	* Escherichia coli str. K-12 substr. MG1655 Site: position = -70 score = 6.36801 sequence = ATTTGAAATCAAGTTTCGCAT Gene: b3575: 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent	* Salmonella typhimurium LT2 Site: position = -82 score = 6.02193 sequence = ATTTGGAACTAGATTTCGCAT Gene: STM3668: 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent	* Citrobacter koseri ATCC BAA-895 Site: position = -72 score = 6.54484 sequence = ATTTGAAATCAGATTTCGCAT Gene: CKO_05033: 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	* Serratia proteamaculans 568 Site: position = -74 score = 6.09968 sequence = ATTTGAAATGCAATTCCGCAT Gene: Spro_3933: 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	2,3-diketo-L-gulonate dehydrogenase, NADH-dependent
yiaL	Escherichia coli str. K-12 substr. MG1655 Gene: b3576: hypothetical protein	Salmonella typhimurium LT2 Gene: STM3669: hypothetical protein	Citrobacter koseri ATCC BAA-895 Gene: CKO_05034: hypothetical protein	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_3934: hypothetical protein	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	hypothetical protein
cheX	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2 Gene: STM3670: putative chemotaxis protein	Citrobacter koseri ATCC BAA-895 Gene: CKO_05035: putative chemotaxis protein	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	putative chemotaxis protein
yiaM	Escherichia coli str. K-12 substr. MG1655 Gene: b3577: predicted 3-dehydro-L-gulonate TRAP transporter, small inner membrane subunit	Salmonella typhimurium LT2 Gene: STM3671: predicted 3-dehydro-L-gulonate TRAP transporter, small inner membrane subunit	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	predicted 3-dehydro-L-gulonate TRAP transporter, small inner membrane subunit
yiaN	Escherichia coli str. K-12 substr. MG1655 Gene: b3578: predicted 3-dehydro-L-gulonate TRAP transporter, large inner membrane subunit	Salmonella typhimurium LT2 Gene: STM3672: predicted 3-dehydro-L-gulonate TRAP transporter, large inner membrane subunit	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	predicted 3-dehydro-L-gulonate TRAP transporter, large inner membrane subunit
yiaO	Escherichia coli str. K-12 substr. MG1655 Gene: b3579: predicted 3-dehydro-L-gulonate TRAP transporter, substrate-binding periplasmic protein	Salmonella typhimurium LT2 Gene: STM3673: predicted 3-dehydro-L-gulonate TRAP transporter, substrate-binding periplasmic protein	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	predicted 3-dehydro-L-gulonate TRAP transporter, substrate-binding periplasmic protein
lyxK	Escherichia coli str. K-12 substr. MG1655 Gene: b3580: L-xylulose kinase	Salmonella typhimurium LT2 Gene: STM3674: L-xylulose kinase	Citrobacter koseri ATCC BAA-895 Gene: CKO_05037: L-xylulose kinase	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_3936: L-xylulose kinase	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	L-xylulose kinase
sgbH	Escherichia coli str. K-12 substr. MG1655 Gene: b3581: 3-keto-L-gulonate 6-phosphate decarboxylase	Salmonella typhimurium LT2 Gene: STM3675: 3-keto-L-gulonate 6-phosphate decarboxylase	Citrobacter koseri ATCC BAA-895 Gene: CKO_05039: 3-keto-L-gulonate 6-phosphate decarboxylase	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_3937: 3-keto-L-gulonate 6-phosphate decarboxylase	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	3-keto-L-gulonate 6-phosphate decarboxylase
sgbU	Escherichia coli str. K-12 substr. MG1655 Gene: b3582: putative 3-hexulose-6-phosphate isomerase	Salmonella typhimurium LT2 Gene: STM3676: putative 3-hexulose-6-phosphate isomerase	Citrobacter koseri ATCC BAA-895 Gene: CKO_05040: putative 3-hexulose-6-phosphate isomerase	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_3938: putative 3-hexulose-6-phosphate isomerase	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	putative 3-hexulose-6-phosphate isomerase
sgbE	Escherichia coli str. K-12 substr. MG1655 Gene: b3583: L-ribulose-5-phosphate 4-epimerase	Salmonella typhimurium LT2 Gene: STM3677: L-ribulose-5-phosphate 4-epimerase	Citrobacter koseri ATCC BAA-895 Gene: CKO_05041: L-ribulose-5-phosphate 4-epimerase	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_3939: L-ribulose-5-phosphate 4-epimerase	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	L-ribulose-5-phosphate 4-epimerase
sgbT	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_05036: predicted 3-dehydro-L-gulonate MFS transporter	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_3935: predicted 3-dehydro-L-gulonate MFS transporter	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	predicted 3-dehydro-L-gulonate MFS transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YiaJ - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --