Regulog PdhR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Pyruvate metabolism |
| Effector: | Pyruvate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - PdhR
- By TF family - GntR/Others
- By effector - Pyruvate
- By pathway - Pyruvate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | 17 | 6 |
| Salmonella typhimurium LT2 | 12 | 5 |
| Citrobacter koseri ATCC BAA-895 | 11 | 5 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 7 | 4 |
| Enterobacter sp. 638 | 12 | 5 |
| Erwinia amylovora ATCC 49946 | 4 | 1 |
| Yersinia pestis KIM | 7 | 4 |
| Serratia proteamaculans 568 | 6 | 3 |
| Erwinia carotovora subsp. atroseptica SCRI1043 | 5 | 2 |
| Edwardsiella tarda EIB202 | 6 | 3 |
| Proteus mirabilis HI4320 | 6 | 3 |
| Photorhabdus luminescens subsp. laumondii TTO1 | 5 | 2 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| cyoA |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -230 score = 5.66584 sequence = CACATTGGTTATACCAATTGC Gene: b0432: cytochrome o ubiquinol oxidase subunit II |
*
Salmonella typhimurium LT2 Site: position = -230 score = 5.62576 sequence = TACATTGGTTATACCAATTAT Gene: STM0443: cytochrome o ubiquinol oxidase subunit II |
*
Citrobacter koseri ATCC BAA-895 Site: position = -230 score = 5.69906 sequence = TACATTGGTTATACCAATTAC Gene: CKO_02729: cytochrome o ubiquinol oxidase subunit II |
Gene: KPN_00394: cytochrome o ubiquinol oxidase subunit II |
*
Enterobacter sp. 638 Site: position = -243 score = 5.13105 sequence = AGCAATGGTTATACCAATTGC Gene: Ent638_0899: cytochrome o ubiquinol oxidase subunit II |
Gene: EAM_0985: cytochrome o ubiquinol oxidase subunit II |
Gene: y1021: cytochrome o ubiquinol oxidase subunit II |
Gene: Spro_1090: cytochrome o ubiquinol oxidase subunit II |
Gene: ECA1143: cytochrome o ubiquinol oxidase subunit II |
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Gene: PMI0108: cytochrome o ubiquinol oxidase subunit II |
Gene: plu3875: cytochrome o ubiquinol oxidase subunit II |
cytochrome o ubiquinol oxidase subunit II |
| cyoB |
Gene: b0431: cytochrome o ubiquinol oxidase subunit I |
Gene: STM0442: cytochrome o ubiquinol oxidase subunit I |
Gene: CKO_02730: cytochrome o ubiquinol oxidase subunit I |
Gene: KPN_00393: cytochrome o ubiquinol oxidase subunit I |
Gene: Ent638_0898: cytochrome o ubiquinol oxidase subunit I |
Gene: EAM_0984: cytochrome o ubiquinol oxidase subunit I |
Gene: y1020: cytochrome o ubiquinol oxidase subunit I |
Gene: Spro_1089: cytochrome o ubiquinol oxidase subunit I |
Gene: ECA1142: cytochrome o ubiquinol oxidase subunit I |
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Gene: PMI0107: cytochrome o ubiquinol oxidase subunit I |
Gene: plu3876: cytochrome o ubiquinol oxidase subunit I |
cytochrome o ubiquinol oxidase subunit I |
| cyoC |
Gene: b0430: cytochrome o ubiquinol oxidase subunit III |
Gene: STM0441: cytochrome o ubiquinol oxidase subunit III |
Gene: CKO_02731: cytochrome o ubiquinol oxidase subunit III |
Gene: KPN_00392: cytochrome o ubiquinol oxidase subunit III |
Gene: Ent638_0897: cytochrome o ubiquinol oxidase subunit III |
Gene: EAM_0983: cytochrome o ubiquinol oxidase subunit III |
Gene: y1019: cytochrome o ubiquinol oxidase subunit III |
Gene: Spro_1088: cytochrome o ubiquinol oxidase subunit III |
Gene: ECA1141: cytochrome o ubiquinol oxidase subunit III |
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Gene: PMI0106: cytochrome o ubiquinol oxidase subunit III |
Gene: plu3877: cytochrome o ubiquinol oxidase subunit III |
cytochrome o ubiquinol oxidase subunit III |
| cyoD |
Gene: b0429: cytochrome o ubiquinol oxidase subunit IV |
Gene: STM0440: cytochrome o ubiquinol oxidase subunit IV |
Gene: CKO_02732: cytochrome o ubiquinol oxidase subunit IV |
Gene: KPN_00391: cytochrome o ubiquinol oxidase subunit IV |
Gene: Ent638_0896: cytochrome o ubiquinol oxidase subunit IV |
Gene: EAM_0982: cytochrome o ubiquinol oxidase subunit IV |
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Gene: Spro_1087: cytochrome o ubiquinol oxidase subunit IV |
Gene: ECA1140: cytochrome o ubiquinol oxidase subunit IV |
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Gene: PMI0105A: cytochrome o ubiquinol oxidase subunit IV |
Gene: plu3878: cytochrome o ubiquinol oxidase subunit IV |
cytochrome o ubiquinol oxidase subunit IV |
| cyoE |
Gene: b0428: protoheme IX farnesyltransferase |
Gene: STM0439: protoheme IX farnesyltransferase |
Gene: CKO_02733: protoheme IX farnesyltransferase |
Gene: KPN_00390: protoheme IX farnesyltransferase |
Gene: Ent638_0895: protoheme IX farnesyltransferase |
Gene: EAM_0981: protoheme IX farnesyltransferase |
Gene: y1018: protoheme IX farnesyltransferase |
Gene: Spro_1086: protoheme IX farnesyltransferase |
Gene: ECA1139: protoheme IX farnesyltransferase |
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Gene: PMI0105: protoheme IX farnesyltransferase |
Gene: plu3879: protoheme IX farnesyltransferase |
protoheme IX farnesyltransferase |
| CRON 2. | |||||||||||||
| yfiD |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -68 score = 5.65711 sequence = AACAATGGTTTTACCAATTGG Gene: b2579: stress-induced alternate pyruvate formate-lyase subunit |
*
Salmonella typhimurium LT2 Site: position = -71 score = 5.65711 sequence = AACAATGGTTTTACCAATTGG Gene: STM2646: stress-induced alternate pyruvate formate-lyase subunit |
*
Citrobacter koseri ATCC BAA-895 Site: position = -70 score = 5.65711 sequence = AACAATGGTTTTACCAATTGG Gene: CKO_00205: stress-induced alternate pyruvate formate-lyase subunit |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -67 score = 5.65711 sequence = AACAATGGTTTTACCAATTGG Gene: KPN_02902: stress-induced alternate pyruvate formate-lyase subunit |
*
Enterobacter sp. 638 Site: position = -67 score = 5.65711 sequence = AACAATGGTTTTACCAATTGG Gene: Ent638_3064: stress-induced alternate pyruvate formate-lyase subunit |
|
*
Yersinia pestis KIM Site: position = -73 score = 6.04674 sequence = AACATTGGTTTTACCAAATAA Gene: y1282: stress-induced alternate pyruvate formate-lyase subunit |
*
Serratia proteamaculans 568 Site: position = -82 score = 5.46644 sequence = AACAATGGTTTTACCAAATGG Gene: Spro_3682: stress-induced alternate pyruvate formate-lyase subunit |
Gene: ECA3288: stress-induced alternate pyruvate formate-lyase subunit |
*
Edwardsiella tarda EIB202 Site: position = -89 score = 5.88779 sequence = AACATTGGTTTTACCAAATGG Gene: ETAE_2732: stress-induced alternate pyruvate formate-lyase subunit |
*
Proteus mirabilis HI4320 Site: position = -75 score = 5.67473 sequence = AACATTGGTTAGACCAAATAC Gene: PMI1898: stress-induced alternate pyruvate formate-lyase subunit |
|
stress-induced alternate pyruvate formate-lyase subunit |
| CRON 3. | |||||||||||||
| ndh |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -138 score = 6.3993 sequence = AATTTTGGTATGACCAATGCA Gene: b1109: NADH dehydrogenase |
*
Salmonella typhimurium LT2 Site: position = -138 score = 6.3993 sequence = AATTTTGGTATGACCAATGCA Gene: STM1211: NADH dehydrogenase |
*
Citrobacter koseri ATCC BAA-895 Site: position = -151 score = 6.3993 sequence = AATTTTGGTATGACCAATGCA Gene: CKO_01946: NADH dehydrogenase |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -136 score = 6.3993 sequence = AATTTTGGTATGACCAATGCA Gene: KPN_01106: NADH dehydrogenase |
*
Enterobacter sp. 638 Site: position = -137 score = 6.08099 sequence = AATTTTGGTATGACCAATGCG Gene: Ent638_1624: NADH dehydrogenase |
Gene: EAM_1473: NADH dehydrogenase |
*
Yersinia pestis KIM Site: position = -136 score = 6.26475 sequence = AATTTTGGTATGACCATATGA Gene: y1777: NADH dehydrogenase |
*
Serratia proteamaculans 568 Site: position = -137 score = 6.4465 sequence = AATTTTGGTATGACCAAATAA Gene: Spro_1926: NADH dehydrogenase |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -137 score = 6.4465 sequence = AATTTTGGTATGACCAAATAA Gene: ECA1815: NADH dehydrogenase |
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Edwardsiella tarda EIB202 Site: position = -150 score = 6.4465 sequence = AATTTTGGTATGACCAAATTA Gene: ETAE_2070: NADH dehydrogenase |
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Proteus mirabilis HI4320 Site: position = -141 score = 5.671 sequence = AACTTTGGTATGACCATATTG Gene: PMI0875: NADH dehydrogenase |
*
Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -138 score = 5.83258 sequence = AATTTTGGTATGACCCACTAA Gene: plu2821: NADH dehydrogenase |
NADH dehydrogenase |
| CRON 4. | |||||||||||||
| pdhR |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -50 score = 6.70577 sequence = GAAATTGGTAAGACCAATTGA Gene: b0113: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family |
*
Salmonella typhimurium LT2 Site: position = -51 score = 6.70577 sequence = GAAATTGGTAAGACCAATTGA Gene: STM0151: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family |
*
Citrobacter koseri ATCC BAA-895 Site: position = -51 score = 6.70577 sequence = GAAATTGGTAAGACCAATTGA Gene: CKO_03260: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -49 score = 6.65759 sequence = TAAATTGGTAAGACCAATTGA Gene: KPN_00117: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family |
*
Enterobacter sp. 638 Site: position = -51 score = 6.70577 sequence = GAAATTGGTAAGACCAATTGA Gene: Ent638_0659: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family |
*
Erwinia amylovora ATCC 49946 Site: position = -49 score = 6.55194 sequence = TAAATTGGTATTACCAATTTA Gene: EAM_0746: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family |
*
Yersinia pestis KIM Site: position = -70 score = 6.75948 sequence = GAAATTGGTATTACCAATTGA Gene: y0766: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family |
*
Serratia proteamaculans 568 Site: position = -52 score = 6.75948 sequence = GAAATTGGTATTACCAATTGA Gene: Spro_4012: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -51 score = 6.75948 sequence = GAAATTGGTATTACCAATTGA Gene: ECA3790: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family |
*
Edwardsiella tarda EIB202 Site: position = -74 score = 6.49541 sequence = GAAATTGGTAATACCAATTTA Gene: ETAE_0658: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family |
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Proteus mirabilis HI4320 Site: position = -69 score = 6.7113 sequence = TAAATTGGTATTACCAATTGA Gene: PMI2047: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family |
*
Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -315 score = 6.7113 sequence = TAAATTGGTATTACCAATTGA Gene: plu3624: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family |
Transcriptional repressor for pyruvate dehydrogenase complex, GntR family |
| aceE |
Gene: b0114: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: STM0152: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: CKO_03259: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: KPN_00118: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: Ent638_0660: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: EAM_0747: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: y0767: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: Spro_4011: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: ECA3789: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: ETAE_0659: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: PMI2046: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: plu3623: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
| aceF |
Gene: b0115: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: STM0153: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: CKO_03258: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: KPN_00119: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: Ent638_0661: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: EAM_0748: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: y0768: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: Spro_4010: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: ECA3788: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: ETAE_0660: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: PMI2045: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: plu3622: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
| lpdA |
Gene: b0116: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
Gene: STM0154: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
Gene: CKO_03256: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
Gene: KPN_00120: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
Gene: Ent638_0662: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
Gene: EAM_0749: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
Gene: y0769: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
Gene: Spro_4009: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
Gene: ECA3787: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
Gene: ETAE_0662: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
Gene: PMI2044: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
Gene: plu3621: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
| CRON 5. | |||||||||||||
| glcD |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -238 score = 4.01435 sequence = TGCACAGGTAGGACCAATTTT Site: position = -121 score = 3.94205 sequence = AAAAATGGTCTGACCGGTAGC Gene: b2979: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
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Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
| glcE |
Gene: b4468: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
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Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
| glcF |
Gene: b4467: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
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Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
| glcG |
Gene: b2977: Hypothetical protein GlcG in glycolate utilization operon |
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Hypothetical protein GlcG in glycolate utilization operon |
| glcB |
Gene: b2976: Malate synthase G (EC 2.3.3.9) |
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Malate synthase G (EC 2.3.3.9) |
| CRON 6. | |||||||||||||
| hemL |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -214 score = 3.69674 sequence = CTTATTGGTCATACAAATAAG Gene: b0154: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
*
Salmonella typhimurium LT2 Site: position = -159 score = 4.78324 sequence = TTAATTGGTAATACAAATCTA Gene: STM0202: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
*
Citrobacter koseri ATCC BAA-895 Site: position = -382 score = 4.78324 sequence = TTAATTGGTAATACAAATACA Gene: CKO_03214: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -170 score = 5.16854 sequence = ATTATTGGTAATACAAATGAA Gene: KPN_00169: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
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Enterobacter sp. 638 Site: position = -168 score = 3.80936 sequence = TATATTGATCATACAAATATT Gene: Ent638_0694: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Gene: EAM_0809: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
*
Yersinia pestis KIM Site: position = -344 score = 3.77286 sequence = AAATTTGATGTAACCAGAGTC Gene: y0799: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Gene: Spro_0781: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Gene: ECA3307: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Gene: ETAE_2778: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Gene: PMI0205: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Gene: plu0902: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |