Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Edwardsiella ictaluri 93-146

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Edwardsiella ictaluri 93-146
Orthologous TF(s) NT01EI_1963
Regulated genes 51
Built upon 685 sites [see more]
Predicted regulatory interactions in Edwardsiella ictaluri 93-146
Locus tag Position Score Sequence
Position: -132
Score: 3.8
Sequence: TTTTTGTTAGTCAA
Locus tag: NT01EI_0222
NT01EI_0222 -132 3.8 TTTTTGTTAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ubiC
Ortholog function: Chorismate--pyruvate lyase (EC 4.1.3.40)
Erwinia amylovora ATCC 49946 EAM_0260 -194 3.8 CTGATATTAGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0626 -230 3.3 GTGACTAGGGTCAA
Escherichia coli str. K-12 substr. MG1655 b4039 -70 3.4 TTGCTTTACATCTC
Photorhabdus luminescens subsp. laumondii TTO1 plu4378 -253 3.8 TTATTTTTGGTCAA
Proteus mirabilis HI4320 PMI2753 -163 4.3 TTGTTTTTTCTCAA
Serratia proteamaculans 568 Spro_4464 -223 3.6 TTGCTGGAGATCAC
Yersinia pestis KIM y0568 -253 3.3 CTGATATTTATAAT
Position: 19
Score: 3.4
Sequence: TTGAAGAAGATCTA
Locus tag: NT01EI_0377
NT01EI_0377 19 3.4 TTGAAGAAGATCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: Aspartate ammonia-lyase (EC 4.3.1.1)
Edwardsiella tarda EIB202 ETAE_0311 19 3.5 TTGAAGAAGATCTA
Enterobacter sp. 638 Ent638_0326 -184 3.6 TTAATAATTATCAT
Erwinia amylovora ATCC 49946 EAM_0416 -194 4 TTGATATAACACGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0621 -288 4 TTGTTCTAAAATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04529 0 3.5 ATGTTAAACAACAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4137 -362 4.2 TTGATTTGGATGAA
-198 3.8 ATCACATATATCAA
Proteus mirabilis HI4320 PMI2546 -202 3.7 ATGAGATAGATCAC
Position: -318
Score: 3.7
Sequence: CCGTTAAAAATCAA
Locus tag: NT01EI_0605
NT01EI_0605 -318 3.7 CCGTTAAAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Escherichia coli str. K-12 substr. MG1655 b3212 -156 3.9 TTGACCTGTATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03624 -114 3.9 ATGTTGTACGACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4009 -362 4.1 GTGATATAAATCAC
-334 4.1 CTGATCTATATCAC
Proteus mirabilis HI4320 PMI3677 -353 3.7 TTATCTAACATCAA
-252 4.1 TTTTTATTTATCAA
Serratia proteamaculans 568 Spro_4344 -330 3.6 ATATTAAATATCAA
Yersinia pestis KIM y0128 -72 3.8 CTGTCTGATATCAA
Position: -301
Score: 5
Sequence: TTGATATATGTCAA
Locus tag: NT01EI_0655
NT01EI_0655 -301 5 TTGATATATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Aerobic respiration control protein arcA
Citrobacter koseri ATCC BAA-895 CKO_03387 -291 5.1 TTGATATATGTCAA
Edwardsiella tarda EIB202 ETAE_0561 -300 5.1 TTGATATATGTCAA
Enterobacter sp. 638 Ent638_0562 -291 5.1 TTGATATATGTCAA
Erwinia amylovora ATCC 49946 EAM_0640 -399 4.5 TTGATGCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3893 -339 5.1 TTGATATATGTCAA
Escherichia coli str. K-12 substr. MG1655 b4401 -291 5.1 TTGATATATGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04856 -291 5.1 TTGATATATGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0562 -282 4.9 TTGATGTACGTCAA
Proteus mirabilis HI4320 PMI3719 -343 4 ATTACATAAATCAA
-282 4.6 TTGATATGTGTCAA
Salmonella typhimurium LT2 STM4598 -291 5.1 TTGATATATGTCAA
Serratia proteamaculans 568 Spro_0681 -299 5.1 TTGATATATGTCAA
Yersinia pestis KIM y3721 -298 5.1 TTGATATATGTCAA
Position: -305
Score: 4.8
Sequence: TTCATTTATATCAA
Position: -139
Score: 4.6
Sequence: ATGATTTGCATCAA
Locus tag: NT01EI_0757
NT01EI_0757 -305 4.8 TTCATTTATATCAA
-139 4.6 ATGATTTGCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
Citrobacter koseri ATCC BAA-895 CKO_03260 -116 4.7 CTGATTTCAATCAA
Edwardsiella tarda EIB202 ETAE_0658 -165 4.5 TTGATTGTTAACAA
-139 5 ATGATTTACATCAA
Enterobacter sp. 638 Ent638_0659 -116 4.7 CTGATTTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3790 -116 4.2 GTGATTTAGCTCAA
Escherichia coli str. K-12 substr. MG1655 b0113 -115 4.8 ATGATTTCAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00117 -114 4.7 CTGATTTCAATCAA
Proteus mirabilis HI4320 PMI2047 -245 4 ATGTGTTTAATCAA
-134 4.2 ATGATTTCGCTCAA
Salmonella typhimurium LT2 STM0151 -116 4.7 CTGATTTCAATCAA
Serratia proteamaculans 568 Spro_4012 -117 4.6 CTGATTTCGATCAA
Yersinia pestis KIM y0766 -135 4.4 ATGATTTCGGTCAA
Position: -315
Score: 4.4
Sequence: TTGATTAGCAACAA
Locus tag: NT01EI_0973
NT01EI_0973 -315 4.4 TTGATTAGCAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdcB
Ortholog function: Threonine dehydratase, catabolic (EC 4.3.1.19)
Citrobacter koseri ATCC BAA-895 CKO_04517 -183 4.2 TTGACAAAAATCAT
Edwardsiella tarda EIB202 ETAE_0894 -131 3.8 TTGCTCTTTATAAA
Enterobacter sp. 638 Ent638_3564 -184 4.5 TTGATCAATATCAG
Escherichia coli str. K-12 substr. MG1655 b3117 -183 4.2 TTGACAAAAATCAG
Salmonella typhimurium LT2 STM3244 -184 4.7 TTGATTGAAATCAG
Position: -187
Score: 4.6
Sequence: ATGATCTCTATCAA
Locus tag: NT01EI_1191
NT01EI_1191 -187 4.6 ATGATCTCTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purM
Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Edwardsiella tarda EIB202 ETAE_1086 -186 4.7 ATGATCTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1254 -198 4.3 CTGATCCAGATCAA
Escherichia coli str. K-12 substr. MG1655 b2499 -243 4.6 TTGACTTTAGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2760 -137 5.2 TTGATTTTCATCAA
Proteus mirabilis HI4320 PMI1575 -148 5 TTGATATTGATCAA
Salmonella typhimurium LT2 STM2499.S -309 4.4 TTGACCTGGATCAA
Yersinia pestis KIM y1407 -312 4.5 CTGATTCAGATCAA
-274 3.7 ATGCTAAAAATCAG
Position: -98
Score: 4.4
Sequence: TTGATAGAGATCAT
Locus tag: NT01EI_1192
NT01EI_1192 -98 4.4 TTGATAGAGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: upp
Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Citrobacter koseri ATCC BAA-895 CKO_00293 -103 4.6 TTGATCCATGTCAA
Edwardsiella tarda EIB202 ETAE_1087 -97 4.5 TTGATTGAGATCAT
Enterobacter sp. 638 Ent638_2986 -97 4.4 TTGATCACCGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1255 -169 4.3 TTGATCTGGATCAG
Escherichia coli str. K-12 substr. MG1655 b2498 -95 4.6 TTGACTAAAGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02821 -96 5 TTGATATACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2759 -103 5.1 TTGATGAAAATCAA
Proteus mirabilis HI4320 PMI1574 -97 5.1 TTGATCAATATCAA
Salmonella typhimurium LT2 STM2498 -103 4.6 TTGATCCAGGTCAA
Yersinia pestis KIM y1408 -98 4.4 TTGATCTGAATCAG
Position: -214
Score: 3.3
Sequence: TTGATCCTGCGCAA
Locus tag: NT01EI_1215
NT01EI_1215 -214 3.3 TTGATCCTGCGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase)
Escherichia coli str. K-12 substr. MG1655 b2208 -46 3.2 TTGGTCGCTCTCAA
Salmonella typhimurium LT2 STM2261 -90 3.3 CTTATTTACAAAAA
Position: -325
Score: 3.8
Sequence: ATGATACAGATCAC
Locus tag: NT01EI_1276
NT01EI_1276 -325 3.8 ATGATACAGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: moeA
Ortholog function: Molybdopterin biosynthesis protein MoeA
Edwardsiella tarda EIB202 ETAE_1153 -335 3.8 ATGATACAGATCAC
Enterobacter sp. 638 Ent638_1321 -155 3.3 TCTATAAATATCAT
Erwinia amylovora ATCC 49946 EAM_1284 -244 3.5 CTGTGATAAATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2836 -383 3.7 ATGATGTAAAGCAG
Escherichia coli str. K-12 substr. MG1655 b0827 18 3.7 TTGATGTCGCTCGA
Photorhabdus luminescens subsp. laumondii TTO1 plu1540 -244 3.9 TTGACAGTGGTCAA
Proteus mirabilis HI4320 PMI0637 -182 3.7 TTAAAATACAACAA
Yersinia pestis KIM y2673 -202 3.8 TTGATATATATATA
Position: -147
Score: 4.1
Sequence: TTGACCAATATCAG
Locus tag: NT01EI_1300
NT01EI_1300 -147 4.1 TTGACCAATATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuC
Ortholog function: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)
Citrobacter koseri ATCC BAA-895 CKO_02537 -106 4.7 TTGATTTTAATCAG
Edwardsiella tarda EIB202 ETAE_1192 -147 4.1 TTGACCAATATCAG
Enterobacter sp. 638 Ent638_1152 -102 4.4 TTGATTTTAGTCAT
Escherichia coli str. K-12 substr. MG1655 b0621 -103 4.7 TTGATTTTAATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00654 -104 4.5 TTGATTTGCATCAG
Proteus mirabilis HI4320 PMI0652 -127 4.5 TTGATATATGTCAT
Salmonella typhimurium LT2 STM0627 -138 3.6 TTCATCTTTAGCAA
-101 4.1 GTGATTTTAATCAG
Serratia proteamaculans 568 Spro_1579 -107 4 TTGACGGATATCAT
Position: -196
Score: 3.7
Sequence: TTGATACAAATAGA
Locus tag: NT01EI_1477
NT01EI_1477 -196 3.7 TTGATACAAATAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: iadA
Ortholog function: Isoaspartyl dipeptidase (EC 3.4.19.5) @ Asp-X dipeptidase
Edwardsiella tarda EIB202 ETAE_1362 22 3.4 CCGACGTCTATCAA
Escherichia coli str. K-12 substr. MG1655 b4328 -5 3.9 TTGTTATGACACAA
Salmonella typhimurium LT2 STM4512 -283 4.4 TTGACTAACGTCAA
Position: -262
Score: 3.9
Sequence: GTGATTTTAATCAC
Locus tag: NT01EI_1665
NT01EI_1665 -262 3.9 GTGATTTTAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Citrobacter koseri ATCC BAA-895 CKO_01318 -238 4.1 TTGATCTGGATCAC
Enterobacter sp. 638 Ent638_2304 -249 4.5 TTGATTCAGATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -311 3.6 TCGATGTTGATCAC
-305 3.8 TTGATCACAAAAAA
Escherichia coli str. K-12 substr. MG1655 b1241 -237 4.3 TTGATTTGGATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -233 4.7 TTGATCTAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -134 4.5 GTGATTAAGATCAA
Proteus mirabilis HI4320 PMI1486 -242 3.8 GTGATGTAGATCAC
Salmonella typhimurium LT2 STM1749 -238 4.7 TTGATTTAGATCAC
Serratia proteamaculans 568 Spro_2704 -274 4.4 ATGATTTAAATCAC
Position: -160
Score: 4.4
Sequence: TTGATGCGCATCAA
Locus tag: NT01EI_1685
NT01EI_1685 -160 4.4 TTGATGCGCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter
Citrobacter koseri ATCC BAA-895 CKO_01333 -117 4.1 TTAATCTGGATCAA
Edwardsiella tarda EIB202 ETAE_1528 -157 4.9 TTGATGTCTATCAA
Enterobacter sp. 638 Ent638_2283 -117 4.1 TTAATCTGGATCAA
Erwinia amylovora ATCC 49946 EAM_1884 -160 5.4 TTGATCTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -160 4.8 TTGATCTGGATCAA
Escherichia coli str. K-12 substr. MG1655 b1256 -162 4.8 TTGATTTAAATCAC
-117 4.1 TTAATCCAGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -247 4.2 TTGATTTCACTCAT
-80 4.1 TTAATCTGGATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -160 5 TTGATTTGGATCAA
Proteus mirabilis HI4320 PMI1350 -164 4.8 TTGATGTGGATCAA
Salmonella typhimurium LT2 STM1732 -117 4.1 TTAATCTGGATCAA
Serratia proteamaculans 568 Spro_2674 -131 5 TTGATTCAGATCAA
Yersinia pestis KIM y2044 -171 3.6 ATGATAAATGGCAA
-147 4.4 ATGATCCAGATCAA
Position: -33
Score: 4.7
Sequence: TTGACTGATATCAA
Locus tag: NT01EI_1963
NT01EI_1963 -33 4.7 TTGACTGATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fnr
Ortholog function: Fumarate and nitrate reduction regulatory protein
Citrobacter koseri ATCC BAA-895 CKO_01409 -83 3.8 TTGATGTAAAGTAA
Edwardsiella tarda EIB202 ETAE_1744 -133 3.4 GTGCTATACATCAC
-33 4.6 TTGACCGATATCAA
Enterobacter sp. 638 Ent638_1853 -33 4.6 TTGACCAATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2207 -34 4.6 TTGACCAATATCAA
Escherichia coli str. K-12 substr. MG1655 b1334 -33 4.7 TTGACAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01530 -327 4.6 TTGACCAATATCAA
-185 3.5 ATGAGCTTGATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2179 -35 3.4 TTGAAGGATATGAA
Proteus mirabilis HI4320 PMI1203 -40 4.5 TTGACACATATCAA
Salmonella typhimurium LT2 STM1660.S -33 4.7 TTGACAAATATCAA
Serratia proteamaculans 568 Spro_2582 -34 4.4 TTGACGCATATCAA
Yersinia pestis KIM y2132 -32 4.4 TTGACGCATATCAA
Position: -117
Score: 4.2
Sequence: TTGACACTTATCAA
Locus tag: NT01EI_2069
NT01EI_2069 -117 4.2 TTGACACTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjA
Ortholog function: Cytochrome c551 peroxidase (EC 1.11.1.5)
Citrobacter koseri ATCC BAA-895 CKO_04957 -73 4.7 TTGATACTTATCAA
Edwardsiella tarda EIB202 ETAE_1715 -117 4.3 TTGACACTTATCAA
Escherichia coli str. K-12 substr. MG1655 b3518 -121 4.7 TTGATTCCTATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Serratia proteamaculans 568 Spro_1968 -89 4.6 TTGATTATCGTCAA
Yersinia pestis KIM y0848 -152 4.7 TTGATAAAGGTCAA
Position: 28
Score: 3.7
Sequence: TTGGTGTTGAACAA
Locus tag: NT01EI_2227
NT01EI_2227 28 3.7 TTGGTGTTGAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Photorhabdus luminescens subsp. laumondii TTO1 plu3875 -336 3.8 TTGTGAGCTATCAA
Proteus mirabilis HI4320 PMI0108 9 3.6 ATGAAATACATAAA
Serratia proteamaculans 568 Spro_1090 -293 3.6 TTCTTTTACATTAA
Yersinia pestis KIM y1021 -223 3.5 TTGTTTTTCCTTAA
Position: -73
Score: 3.9
Sequence: TTTTATTAAATCAA
Locus tag: NT01EI_2315
NT01EI_2315 -73 3.9 TTTTATTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icdA
Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42)
Edwardsiella tarda EIB202 ETAE_2050 -73 3.9 TTTTATTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2439 -158 3.7 GTGATTTTTAACAG
Escherichia coli str. K-12 substr. MG1655 b1136 -89 3.6 TTGCTCTAAAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2801 -249 4.8 TTGTTAAATATCAA
Serratia proteamaculans 568 Spro_2025 -3 4.3 TTGATGGAAAGCAA
Yersinia pestis KIM y1802 -106 3.7 GTGATTTTTAACAG
Position: 0
Score: 3.7
Sequence: ATGAAGTTAGTCAA
Locus tag: NT01EI_2460
NT01EI_2460 0 3.7 ATGAAGTTAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ansB
Ortholog function: L-asparaginase (EC 3.5.1.1)
Edwardsiella tarda EIB202 ETAE_2179 0 3.7 ATGAAGTTAGTCAA
Escherichia coli str. K-12 substr. MG1655 b2957 -71 4.5 TTGTTTAACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1616 -55 3.7 TTTATTGTTATCAT
Proteus mirabilis HI4320 PMI0708 -139 4.2 TTGATTTTAAATAA
Yersinia pestis KIM y2787 0 3.6 ATGAAATATATAAA
Position: -75
Score: 4.2
Sequence: ATGATCCATGTCAA
Locus tag: NT01EI_2462
NT01EI_2462 -75 4.2 ATGATCCATGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Citrobacter koseri ATCC BAA-895 CKO_02167 -116 4.9 ATGATCTATATCAA
Edwardsiella tarda EIB202 ETAE_2181 -117 4.2 ATGATCCATGTCAA
Enterobacter sp. 638 Ent638_1424 -74 4.9 ATGATCTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -228 4 ATGATTTTTATTAA
-75 4.5 ATGATCCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0904 -74 4.9 ATGATCTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -117 4.9 ATGATCTATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -267 4.1 TTTATTTGCAACAA
-159 4.7 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Proteus mirabilis HI4320 PMI0706 -159 4.1 TTATTATTAATCAA
-85 4.5 ATGATCCATATCAA
Salmonella typhimurium LT2 STM0974 -74 4.9 ATGATCTATATCAA
Serratia proteamaculans 568 Spro_1703 -143 3.9 ATAATTTAACTCAA
-81 4.6 ATGATCCAAATCAA
Yersinia pestis KIM y2789 -80 4.5 ATGATCCATATCAA
Position: -112
Score: 4.4
Sequence: TTGCGTTACATCAA
Locus tag: NT01EI_2500
NT01EI_2500 -112 4.4 TTGCGTTACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Edwardsiella tarda EIB202 ETAE_2215 -113 4.4 TTGCGTTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2662 -114 4.4 TTGCGCTAAATCAA
Proteus mirabilis HI4320 PMI2112 -131 4.4 TTGCGTTAGATCAA
Serratia proteamaculans 568 Spro_1666 -66 4.4 TTGCGCTAAATCAA
Yersinia pestis KIM y2819 -115 4.1 TTGCGTCAAATCAA
Position: -91
Score: 4.2
Sequence: TTGATACATATCAC
Locus tag: NT01EI_2641
NT01EI_2641 -91 4.2 TTGATACATATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhK
Ortholog function: Predicted transferase, NAD(P)-binding
Edwardsiella tarda EIB202 ETAE_2348 -92 3.9 TTGATACATGTCAC
Enterobacter sp. 638 Ent638_1272 -90 4.5 TTGATATACGTCAT
Erwinia amylovora ATCC 49946 EAM_1217 -88 4 TTGATATATAGCGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2818 -117 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b0780 -147 4.8 TTGATATACATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00809 -91 4 TTGATGTCGGTCAG
Salmonella typhimurium LT2 STM0801 -146 4.8 TTGATATATATCAT
Yersinia pestis KIM y3024 -190 4.2 TTGTTTAAAATCAC
Position: -93
Score: 4.1
Sequence: ATGATGTTAATCAT
Locus tag: NT01EI_2694
NT01EI_2694 -93 4.1 ATGATGTTAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Citrobacter koseri ATCC BAA-895 CKO_00498 -92 4.1 ATGATGTTAATCAT
Edwardsiella tarda EIB202 ETAE_2397 -93 4.1 ATGATGTTAATCAT
Enterobacter sp. 638 Ent638_2840 -92 4.1 ATGATGTTAATCAT
Erwinia amylovora ATCC 49946 EAM_2301 -119 3.9 TTGCTTTCGGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -91 4.1 ATGATGTTAATCAT
Escherichia coli str. K-12 substr. MG1655 b2296 -92 4.1 ATGATGTTAATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -91 4.1 ATGATGTTAATCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -117 4.1 ATGATGTTAATCAT
Proteus mirabilis HI4320 PMI1771 -165 3.7 TTGATGATTGGCAA
Salmonella typhimurium LT2 STM2337 -92 4.1 ATGATGTTAATCAT
Serratia proteamaculans 568 Spro_3316 -121 4.1 ATGATGTTAATCAT
Yersinia pestis KIM y1622 -163 4.1 ATGATGTTAATCAT
Position: -114
Score: 3.5
Sequence: TTATTGTATATAAA
Locus tag: NT01EI_2767
NT01EI_2767 -114 3.5 TTATTGTATATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmC
Ortholog function: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Citrobacter koseri ATCC BAA-895 CKO_00577 -136 3.6 TTGACTGGCGACAA
Edwardsiella tarda EIB202 ETAE_2459 -114 3.5 TTATTGTATATAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1884 -106 4.4 TTGATCTCAATAAA
Escherichia coli str. K-12 substr. MG1655 b2199 -46 3.2 TTGGTCGCTCTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02079 -326 3.4 GTGATACAAGTCAC
Salmonella typhimurium LT2 STM2252 -90 3.3 CTTATTTACAAAAA
Salmonella typhimurium LT2 STM3817 -110 4.7 TTGATACCAATCAA
Yersinia pestis KIM y1569 -302 4 TGGATTTTTAACAA
Position: -28
Score: 3.5
Sequence: GCGATTAAAATCAG
Locus tag: NT01EI_2769
NT01EI_2769 -28 3.5 GCGATTAAAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Citrobacter koseri ATCC BAA-895 CKO_00574 -35 3.4 TTGCCCGACATCAG
Edwardsiella tarda EIB202 ETAE_2461 -396 4.3 TTGCTATATATCAG
5 3.5 GCGATTAAAATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1882 -106 4.4 TTGATCTCAATAAA
Escherichia coli str. K-12 substr. MG1655 b2201 -46 3.2 TTGGTCGCTCTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02081 -326 3.4 GTGATACAAGTCAC
Salmonella typhimurium LT2 STM2254 -90 3.3 CTTATTTACAAAAA
Salmonella typhimurium LT2 STM3819 -110 4.7 TTGATACCAATCAA
Yersinia pestis KIM y1567 -302 4 TGGATTTTTAACAA
Position: 10
Score: 3.6
Sequence: ATGTGAAAAAACAA
Locus tag: NT01EI_2872
NT01EI_2872 10 3.6 ATGTGAAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895 CKO_02438 25 3.6 ATGTGAAAAAACAA
Edwardsiella tarda EIB202 ETAE_2588 10 4
Escherichia coli str. K-12 substr. MG1655 b0721 10 3.6 ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00728 -104 3.6 ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1426 -127 4 TTGTGAAAAAACAA
Proteus mirabilis HI4320 PMI0565 -2 4 TTGTGAAAAAACAA
Salmonella typhimurium LT2 STM0732 10 3.6 ATGTGAAAAAACAA
Serratia proteamaculans 568 Spro_1263 -249 4.1 GTGATCTAAATCAC
Yersinia pestis KIM y3071 -224 3.8 ATGTTATCAATCAG
Position: -27
Score: 4.3
Sequence: TTGCTCTATCTCAA
Locus tag: NT01EI_3059
NT01EI_3059 -27 4.3 TTGCTCTATCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiD
Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit
Edwardsiella tarda EIB202 ETAE_2732 -27 4.3 TTGCTCTATCTCAA
Proteus mirabilis HI4320 PMI1898 -180 5.2 TTGATTTAAAACAA
-127 5.1 TTGATATTTATCAA
Serratia proteamaculans 568 Spro_3682 -189 4.2 TTGACATAAAACAT
-136 4.9 TTGACTTTAATCAA
Yersinia pestis KIM y1282 -180 4.6 TTGATATAAAACAT
-127 5.1 TTGATTTGAATCAA
Position: -260
Score: 4.8
Sequence: TTGATCAAAAACAA
Locus tag: NT01EI_3162
NT01EI_3162 -260 4.8 TTGATCAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552)
Citrobacter koseri ATCC BAA-895 CKO_03814 -146 4.7 TTGATTAAAGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1875 -135 4.8 TTGATCAAAAACAA
Escherichia coli str. K-12 substr. MG1655 b4070 -141 4.7 TTGATTAAAGACAA
Salmonella typhimurium LT2 STM4277 -143 4.7 TTGATTAAAGACAA
Position: -288
Score: 3.7
Sequence: TTGTTCGAGATCTA
Position: -153
Score: 3.5
Sequence: TTTTTATAAGTAAA
Locus tag: NT01EI_3242
NT01EI_3242 -288 3.7 TTGTTCGAGATCTA
-153 3.5 TTTTTATAAGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydeJ
Ortholog function: Competence/damage-inducible protein CinA
Edwardsiella tarda EIB202 ETAE_2862 -5 3.4 TCGCTATGGAACAA
Enterobacter sp. 638 Ent638_3132 -81 4.1 TTCAGTAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b1537 -195 3.5 TTGTTATAAGGCAT
7 3.5 TTAATAGAGATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03032 -26 3.5 TTTATCCAGAGCAA
Proteus mirabilis HI4320 PMI0374 -19 3.5 TCGAGGTGAAACAA
Salmonella typhimurium LT2 STM2830 -347 3.3 TTGACCGCCGTCAT
Salmonella typhimurium LT2 STM1514 -238 3.6 GTCATATGCATCAA
Yersinia pestis KIM y0880 -297 3.7 TTGATCGCAGTTAA
Position: -177
Score: 3.9
Sequence: TTTATTTTAATTAA
Locus tag: NT01EI_3638
NT01EI_3638 -177 3.9 TTTATTTTAATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhX
Ortholog function: Predicted oxidoreductase, Fe-S subunit
Citrobacter koseri ATCC BAA-895 CKO_01696 -162 4.7 TTGATAACGATCAA
Escherichia coli str. K-12 substr. MG1655 b1671 -214 4.7 TTGATAACGATCAA
-60 3.7 ATGCTTAATATCAG
Proteus mirabilis HI4320 PMI0067 -92 3.7 TTTATATACAACGA
Position: -251
Score: 3.6
Sequence: TTGAATTTAAAAAA
Position: -153
Score: 4.4
Sequence: TTCTTTTATATCAA
Locus tag: NT01EI_3672
NT01EI_3672 -251 3.6 TTGAATTTAAAAAA
-153 4.4 TTCTTTTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glgC
Ortholog function: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Edwardsiella tarda EIB202 ETAE_3306 -153 4.8 TTCATTTATATCAA
Edwardsiella tarda EIB202 ETAE_3309 -153 4.8 TTCATTTATATCAA
Enterobacter sp. 638 Ent638_3838 -241 3.7 TTGTTAAATCTCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4149 -38 4.2 TTTATTTAATTCAA
Salmonella typhimurium LT2 STM3536 -199 4 TTCATTTTTATCAG
Yersinia pestis KIM y3888 -25 4.2 ATGCTATTAATCAA
Position: -222
Score: 4
Sequence: CTGACCTGAATCAA
Locus tag: NT01EI_3808
NT01EI_3808 -222 4 CTGACCTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA
Position: -51
Score: 3.8
Sequence: TTATTTTTTAACAA
Locus tag: NT01EI_3907
NT01EI_3907 -51 3.8 TTATTTTTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpE
Ortholog function: ATP synthase C chain (EC 3.6.3.14)
Citrobacter koseri ATCC BAA-895 CKO_00077 -122 4.2 TTGTTTGAAATCAC
Enterobacter sp. 638 Ent638_4127 -292 3.7 TTGATTAATATGAC
Erwinia amylovora ATCC 49946 EAM_3479 -124 3.9 TCGATTGAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4517 -191 3.7 ATGATTGTTAGCAA
Escherichia coli str. K-12 substr. MG1655 b3737 -123 4.2 TTGTTTGAAATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04142 -122 4.2 TTGTTTGAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0045 -225 3.9 ATTATTAAAAACAA
Proteus mirabilis HI4320 PMI3059 -130 4
Salmonella typhimurium LT2 STM3870 -122 4.2 TTGTTTGAAATCAC
Position: 9
Score: 3.8
Sequence: CTGAATTTAAACAA
Locus tag: NT01EI_3922
NT01EI_3922 9 3.8 CTGAATTTAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phoU
Ortholog function: Phosphate transport system regulatory protein PhoU
Citrobacter koseri ATCC BAA-895 CKO_00061 -243 4.4 CTGTTTTTAATCAA
Edwardsiella tarda EIB202 ETAE_3542 -93 3.8 TTTACTGTCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4473 -52 3.6 CTGATTGATAACGA
Escherichia coli str. K-12 substr. MG1655 b3724 -138 3.8 CTTATTTAAATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu0218 -33 3.9 TTGTTGATTCTCAA
Proteus mirabilis HI4320 PMI2897 -46 4 TTGATAGATGTCGA
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