Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Moritella sp. PE36

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Moritella sp. PE36
Orthologous TF(s) PE36_23732
Regulated genes 87
Built upon 2713 sites [see more]
Predicted regulatory interactions in Moritella sp. PE36
Locus tag Position Score Sequence
Position: -156
Score: 4.8
Sequence: TAATGTGATCATGAGCACGTAT
Position: -117
Score: 4.2
Sequence: AATTCTGATGTGAATCAAGCAA
Position: -34
Score: 4.6
Sequence: TTGCGTGATCTAATTAACACTT
Locus tag: PE36_06482
PE36_06482 -156 4.8 TAATGTGATCATGAGCACGTAT
-117 4.2 AATTCTGATGTGAATCAAGCAA
-34 4.6 TTGCGTGATCTAATTAACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3553
Ortholog function: putative sulfate permease
Shewanella oneidensis MR-1 SO3553 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1 SO3553 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1 SO3553 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella putrefaciens CN-32 Sputcn32_1042 -81 4 ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1042 -81 4 ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1042 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3123 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3123 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3123 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp ANA-3 Shewana3_3154 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp ANA-3 Shewana3_3154 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp ANA-3 Shewana3_3154 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2974 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2974 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2974 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3056 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3056 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3056 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella baltica OS155 Sbal_1037 -139 3.8 TGATATGAAATTGTTCGCAGTT
-95 4.1 TTTCGTTATATACTTAACAGAA
Shewanella frigidimarina NCIMB 400 Sfri_3674 -116 4.5 TAATGTGATGATAATTATATTA
Shewanella frigidimarina NCIMB 400 Sfri_3674 -116 4.5 TAATGTGATGATAATTATATTA
Shewanella frigidimarina NCIMB 400 Sfri_3674 -116 4.5 TAATGTGATGATAATTATATTA
Shewanella amazonensis SB2B Sama_1067 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B Sama_1067 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B Sama_1067 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella sediminis HAW-EB3 Ssed_1334 -233 4.1 GTAAGTGCTACGCATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1334 -233 4.1 GTAAGTGCTACGCATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1334 -233 4.1 GTAAGTGCTACGCATCACATTT
Shewanella woodyi ATCC 51908 Swoo_3320 -288 3.7 TCCAGCGACTTAGATCACATTT
Shewanella woodyi ATCC 51908 Swoo_3320 -288 3.7 TCCAGCGACTTAGATCACATTT
Position: -4
Score: 4.7
Sequence: TATTGTGATTGGATTAACGATA
Locus tag: PE36_06657
PE36_06657 -4 4.7 TATTGTGATTGGATTAACGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shewana3_3248
Ortholog function: UspA domain-containing protein
Shewanella oneidensis MR-1 SO3680 -109 3.8 TTGCGTGATTTTGTGCAAGCAT
Position: -347
Score: 3.6
Sequence: GTGTGTGATTTATATAAATTTA
Position: -259
Score: 4
Sequence: TATTTAGATAAATAGCACAAAT
Locus tag: PE36_06692
PE36_06692 -347 3.6 GTGTGTGATTTATATAAATTTA
-259 4 TATTTAGATAAATAGCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: map
Ortholog function: methionine aminopeptidase (EC 3.4.11.18)
Shewanella pealeana ATCC 700345 Spea_2886 -104 4.2 TAATTTGAAAAAAAGCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_2982 -92 3.7 TAATATGAAAAAAAGCACAAAC
Shewanella piezotolerans WP3 swp_3524 -93 4.2 TATTTTGAAAAAAAGCACAAAT
Shewanella sediminis HAW-EB3 Ssed_3162 -91 3.9 TATTGAGAGAGCAAACACAAAT
Position: -89
Score: 4.1
Sequence: AAAGGCGATCTGCATCACTTTA
Locus tag: PE36_19590
PE36_19590 -89 4.1 AAAGGCGATCTGCATCACTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0919
Ortholog function: Serine transporter, putative
Shewanella baltica OS155 Sbal_0765 -280 4.1 TTTTGTGATCTAGATCCAATCC
-139 4 ATCAGCGATCTAGATCTCAATA
Shewanella frigidimarina NCIMB 400 Sfri_0688 -146 4.1 ATAGTTGATTCAGAACACATTA
Shewanella pealeana ATCC 700345 Spea_0771 -161 4.2 TTAAGAGATCTAGCTCTCAATT
Shewanella halifaxensis HAW-EB4 Shal_0823 -160 4.3 TTAAGCGATCTAGCTCTCAATT
Position: -137
Score: 3.6
Sequence: AAACTTGAGATATGTCATAAAC
Position: -34
Score: 4.9
Sequence: TATTGCGATTGGTATCACACAA
Locus tag: PE36_19695
PE36_19695 -137 3.6 AAACTTGAGATATGTCATAAAC
-34 4.9 TATTGCGATTGGTATCACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0572
Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17)
Shewanella oneidensis MR-1 SO0572 -102 4.4 TATTTTGACTCAAGTCAAAATT
Shewanella putrefaciens CN-32 Sputcn32_3304 -102 4.3 TATTTTGACTAAGGTCAAAATT
Shewanella sp W3-18-1 Sputw3181_0637 -102 4.3 TATTTTGACTAAGGTCAAAATT
Shewanella sp ANA-3 Shewana3_0572 -102 4.4 TATTTTGACTCATGTCAAAAAT
Shewanella sp MR-4 Shewmr4_0573 -102 4.5 TATTTTGACGCATGTCAAAATT
Shewanella sp MR-7 Shewmr7_3457 -102 4.5 TATTTTGACGCATGTCAAAATT
Shewanella baltica OS155 Sbal_0533 -102 4.3 TATTTTGACTCAAGTCAAAAAA
Shewanella denitrificans OS217 Sden_0534 -100 3.7 ATTTTTGACTAGGGTCAATATT
Shewanella frigidimarina NCIMB 400 Sfri_3510 -237 4.2 CATTGTGATCAATGTCATATCA
Shewanella loihica PV-4 Shew_0454 -124 4.3 TATTTTGACGCCAGTCAAAAAA
Shewanella pealeana ATCC 700345 Spea_3709 -110 3.7 AAAAATGACCAATGTCATAATT
Shewanella halifaxensis HAW-EB4 Shal_3794 -110 3.9 TAAAATGATGAGTGTCATAATT
Shewanella piezotolerans WP3 swp_0563 -110 3.6 TTTATTGACGATAGTCAAAAAA
Shewanella sediminis HAW-EB3 Ssed_0623 -108 4.1 TTTTTTGACTGAAGTCAAACTT
Position: -174
Score: 4.2
Sequence: ATTCATAATGTACGTCACATTA
Locus tag: PE36_20495
PE36_20495 -174 4.2 ATTCATAATGTACGTCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1278
Ortholog function: methyl-accepting chemotaxis protein
Shewanella oneidensis MR-1 SO1278 -297 4.4 CATTGTGAGTTGAGTCATATTT
-189 4 TAATGGGAGCGTCATCACACTC
-57 4.1 TAAAATGAACTAGATCAAAATA
Shewanella sp ANA-3 Shewana3_3088 -217 4.1 TTTCGCGATAAATATCAAACTT
-60 4.1 AAAAATGAACTAGATCAAAATA
Shewanella sp MR-4 Shewmr4_2909 -249 3.7 TATTGTGAGTTAGGTCATGTCG
-60 4.1 AAAAATGAACTAGATCAAAATA
Shewanella sp MR-7 Shewmr7_2991 -249 3.7 TATTGTGAGTTAGGTCATGTCG
-60 4.1 AAAAATGAACTAGATCAAAATA
Position: -127
Score: 4.8
Sequence: ATATGTGATTATTATCACTTTA
Locus tag: PE36_01547
PE36_01547 -127 4.8 ATATGTGATTATTATCACTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Shewanella oneidensis MR-1 SO4133 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella putrefaciens CN-32 Sputcn32_0543 -230 4.4 AAGTTAGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp W3-18-1 Sputw3181_3629 -230 4.4 AAGTTAGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp ANA-3 Shewana3_3680 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-4 Shewmr4_3505 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-7 Shewmr7_0447 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella baltica OS155 Sbal_3852 -229 3.8 GATTAGGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella denitrificans OS217 Sden_3074 -92 4.4 AACTGTGATGAAGTTAACCAAA
Shewanella frigidimarina NCIMB 400 Sfri_3403 -244 4.7 TAACTTGATGTAAATCACGTTA
-92 4.8 ATATGTGATCAAGTTAACCTTA
Shewanella amazonensis SB2B Sama_0412 -92 4.7 ATTCGTGATCCAGTTAACCTTA
Shewanella loihica PV-4 Shew_3390 -92 4.6 AAGTGTGATCAGGTTAACCTTA
Shewanella pealeana ATCC 700345 Spea_0460 -92 4.7 AAGTGTGATCGGCTTAACCTTT
Shewanella halifaxensis HAW-EB4 Shal_0535 -92 4.6 AAGTGTGATCAGTTTAACCTTT
Shewanella piezotolerans WP3 swp_4702 -310 4.7 ATTTGTGAGTTAGATCATGTTT
-92 4.6 AAGTGTGATCAGGTTAACCTTA
Shewanella sediminis HAW-EB3 Ssed_0461 -92 4.7 AAGTGTGATCGAGCTAACCTTT
Shewanella sediminis HAW-EB3 Ssed_2504 -84 3.9 CAATGTAATATGCAAAACATTT
Shewanella woodyi ATCC 51908 Swoo_4509 -272 4.9 AAATGTGATGTGGGTCAACAAA
-92 4.7 AAGTGTGATCAAGTTAACCTTA
Position: -37
Score: 3.8
Sequence: TTATTTGATGTTGCTTAATTAT
Locus tag: PE36_03856
PE36_03856 -37 3.8 TTATTTGATGTTGCTTAATTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Shewanella oneidensis MR-1 SO0263 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella putrefaciens CN-32 Sputcn32_3727 -213 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella sp W3-18-1 Sputw3181_0188 -213 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella sp ANA-3 Shewana3_0231 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-4 Shewmr4_0231 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-7 Shewmr7_0226 -222 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella baltica OS155 Sbal_0228 -212 4.4 TTTTGTGATTAGAATCTCAACA
Shewanella denitrificans OS217 Sden_3569 -186 4 TTTTGTGATAAGCCTCCCAGCT
Shewanella frigidimarina NCIMB 400 Sfri_0179 -213 4.2 TTTTGTGATAACAATCTCAGCT
Shewanella amazonensis SB2B Sama_0245 -207 3.8 TTTTGTGAGTTCCCTCCCAGCT
Shewanella loihica PV-4 Shew_0190 -223 4.8 TTTTGTGATTAATATCAGAATT
Shewanella pealeana ATCC 700345 Spea_0215 -212 4.1 TTTTGTGATATTAATCTCGCCA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella halifaxensis HAW-EB4 Shal_4104 -212 3.9 TTTTGTGACATAAACCGTACTA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella piezotolerans WP3 swp_2043 -212 5 ATTTGTGATTTAAATCGCGTTA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella sediminis HAW-EB3 Ssed_4287 -223 4.5 TTTTGTGATTTCAATCAAAGCT
Shewanella woodyi ATCC 51908 Swoo_4659 -224 4.2 TTTTATGACTTTAATCAAAGTA
Position: -95
Score: 4.5
Sequence: TTCTTTGATTTTCGTCACAAAT
Locus tag: PE36_20809
PE36_20809 -95 4.5 TTCTTTGATTTTCGTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Shewanella oneidensis MR-1 SO0862 -145 4.7 TTATGCGATATTGTTCTCATTT
Shewanella putrefaciens CN-32 Sputcn32_3139 -142 4.2 TTATGCGATATTGTTCTAAATT
Shewanella sp W3-18-1 Sputw3181_0804 -142 4.2 TTATGCGATATTGTTCTAAATT
Shewanella sp ANA-3 Shewana3_3416 -143 3.9 TTATGCGATATTGTTCTAATTC
Shewanella sp MR-4 Shewmr4_0718 -143 3.9 TTATGCGATATTGTTCTAATTC
Shewanella sp MR-7 Shewmr7_3304 -143 3.9 TTATGCGATATTGTTCTAATTC
Shewanella baltica OS155 Sbal_3502 -142 4.1 TTATGCGATATTGTTCTTAATT
Shewanella amazonensis SB2B Sama_2949 -144 4.2 TTATGTGATATTGTTCTGGTTT
Position: -96
Score: 3.4
Sequence: TAATTTAATAATTATCAACTAG
Locus tag: PE36_21579
PE36_21579 -96 3.4 TAATTTAATAATTATCAACTAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE2
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella oneidensis MR-1 SO2536 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella putrefaciens CN-32 Sputcn32_1791 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp W3-18-1 Sputw3181_2234 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp ANA-3 Shewana3_2323 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-4 Shewmr4_2146 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-7 Shewmr7_2223 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella baltica OS155 Sbal_2306 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella denitrificans OS217 Sden_1764 -66 3.8 ACTTGTGAATAGGATCATCATA
Shewanella frigidimarina NCIMB 400 Sfri_1869 -67 3.8 TCTTGTGAATGAGATCAATAAT
Shewanella amazonensis SB2B Sama_1870 -64 4.3 ACTTGTGATCAGGATCGCTTAT
Shewanella loihica PV-4 Shew_2108 -71 4.9 AATTGTGATTATGGTCATATAA
Shewanella pealeana ATCC 700345 Spea_2393 -70 4.5 AATTGTGAGATAGAACTCAAAA
Shewanella halifaxensis HAW-EB4 Shal_1890 -70 4.3 AATTGTGAGATAAACCTCAAAA
Shewanella piezotolerans WP3 swp_2312 -97 3.5 AATTGTGACGTAGACCCGCAAA
Shewanella sediminis HAW-EB3 Ssed_1999 -71 4.5 AATTGTGATTATGATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_2604 -73 4.8 AATTGTGATATCGATCAATATA
Position: -178
Score: 3.8
Sequence: TTTTATGATAAGGCTTAGATTT
Locus tag: PE36_19090
PE36_19090 -178 3.8 TTTTATGATAAGGCTTAGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_4060
Ortholog function: phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
Shewanella sp ANA-3 Shewana3_0861 -204 4 AAACTTGCATCAGCTCACATAA
Shewanella sp MR-4 Shewmr4_3074 -203 3.9 AAACTTGCGTCACCTCACATAA
Shewanella sp MR-7 Shewmr7_0898 -204 4 AAACTTGCATCAGCTCACATAA
Shewanella frigidimarina NCIMB 400 Sfri_3189 -251 4.5 ATATTTGACCATGTTCAAATAT
Shewanella loihica PV-4 Shew_0671 -217 4 AATAGTGATGAGGTTAATATAG
Shewanella pealeana ATCC 700345 Spea_0661 -283 4.1 TTATGTGCCATGCAACACATTG
Shewanella halifaxensis HAW-EB4 Shal_3535 -147 3.9 AAATATGAGCTTGTTCCAAATT
Shewanella halifaxensis HAW-EB4 Shal_2004 -157 4.3 TAATGTGATTTTCAGAATAATT
Shewanella piezotolerans WP3 swp_4060 -318 4.3 TGAGGTGATGCATATCATAAAA
Position: -138
Score: 3.9
Sequence: TAGTGAGAGTGACATCACTTAT
Locus tag: PE36_00764
PE36_00764 -138 3.9 TAGTGAGAGTGACATCACTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_3096
Ortholog function: Outer membrane lipoprotein omp16 precursor
Shewanella amazonensis SB2B Sama_3096 -197 4 TAATGGTATTAATATCAAATAT
-40 3.7 AGTCGTTATACTGGCCACAAAA
Position: -331
Score: 3.8
Sequence: TATAGTGAACAACATCAATAAA
Locus tag: PE36_12372
PE36_12372 -331 3.8 TATAGTGAACAACATCAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Shewanella oneidensis MR-1 SO3089 -131 3.9 AAGTTAGAATCAGATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_2460 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp W3-18-1 Sputw3181_1548 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp ANA-3 Shewana3_1460 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-4 Shewmr4_1407 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-7 Shewmr7_1472 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella baltica OS155 Sbal_2761 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella denitrificans OS217 Sden_1529 -109 3.9 AAGTTAGAATCAGATCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2677 -104 3.9 AAGTTAGAATCAGATCACACTT
Shewanella amazonensis SB2B Sama_2168 -112 3.6 AAGTTAGAATCGGGTCACACTT
Shewanella loihica PV-4 Shew_2426 -134 3.9 AAGTTAGAATCAGATCACACTT
Shewanella pealeana ATCC 700345 Spea_2599 -116 3.9 AAGTTAGAATCAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_2671 -119 3.9 AAGTTAGAATCAGATCACACTT
Shewanella piezotolerans WP3 swp_3140 -122 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sediminis HAW-EB3 Ssed_1628 -151 3.9 AAGTTAGAATCAGATCACACTT
Shewanella woodyi ATCC 51908 Swoo_3027 -138 4.1 AAGTTAGAATCAGATCACATTT
Position: -114
Score: 4.1
Sequence: AATTATGCTGCAGCTAACACTT
Locus tag: PE36_12497
PE36_12497 -114 4.1 AATTATGCTGCAGCTAACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaB
Ortholog function: molybdenum cofactor biosynthesis protein MoaB
Shewanella amazonensis SB2B Sama_3525 -180 4 CTGAGTGAGCGGCGTCACAATT
Shewanella loihica PV-4 Shew_0088 -189 4.4 CTTCGTGAGCGGTGTCACATTA
Shewanella pealeana ATCC 700345 Spea_4119 -222 4.1 TGCCGTGATAACTGTCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0123 -222 4.3 TGGCGTGATAACTGTCACAAAA
Shewanella piezotolerans WP3 swp_5008 -222 4.3 TGAGGTGATTAGTGTCACAAAA
Shewanella sediminis HAW-EB3 Ssed_4401 -221 4.4 GTATGTGAGGGGTGTCACAAAA
Shewanella woodyi ATCC 51908 Swoo_4792 -222 4.3 GAATGTGAGTGTCGTCACAAAA
Position: -34
Score: 3.5
Sequence: ATTTGCGATTATAATAACTTAC
Locus tag: PE36_23732
PE36_23732 -34 3.5 ATTTGCGATTATAATAACTTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: Cyclic AMP receptor protein Crp
Shewanella oneidensis MR-1 SO0624 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella putrefaciens CN-32 Sputcn32_0652 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp W3-18-1 Sputw3181_3522 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp ANA-3 Shewana3_0617 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp MR-4 Shewmr4_0618 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp MR-7 Shewmr7_3412 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella baltica OS155 Sbal_0578 -174 3.7 TTAGTTGACTTAAATCACTAAA
Shewanella denitrificans OS217 Sden_3190 -94 3.6 AAACACGATCTTGGTCAAAGTT
Shewanella frigidimarina NCIMB 400 Sfri_3292 -97 4 AAATACGATCTCTATCAAAGTT
Shewanella amazonensis SB2B Sama_3004 -96 3.8 AATTTCGATCTGCATCATGGTT
Shewanella loihica PV-4 Shew_0585 -238 4 AGATGTGATATGGGCAACATTG
Shewanella pealeana ATCC 700345 Spea_3509 -225 3.6 AGATGTGATATAAGCCTAATTG
Shewanella halifaxensis HAW-EB4 Shal_3603 -226 3.5 AGATGTGATACAAGCCTAATTG
Shewanella piezotolerans WP3 swp_0755 -309 4.2 TTTATTGATAAGGTTCAAAAAA
Shewanella sediminis HAW-EB3 Ssed_3873 -173 3.8 TTAGTTGACTTATATCACTAAT
Shewanella woodyi ATCC 51908 Swoo_0662 -173 3.8 TTAGTTGACTTATATCACTAAT
Position: 25
Score: 3.7
Sequence: TAATGGGCTCAGATTCAGATTT
Locus tag: PE36_14945
PE36_14945 25 3.7 TAATGGGCTCAGATTCAGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purE
Ortholog function: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Shewanella oneidensis MR-1 SO3554 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1 SO3554 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella putrefaciens CN-32 Sputcn32_1041 -81 4 ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1041 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3124 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3124 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp ANA-3 Shewana3_3155 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp ANA-3 Shewana3_3155 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2975 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2975 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3057 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3057 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella baltica OS155 Sbal_1036 -139 3.8 TGATATGAAATTGTTCGCAGTT
-95 4.1 TTTCGTTATATACTTAACAGAA
Shewanella denitrificans OS217 Sden_1224 -315 3.7 AATTCTGACTCATCTTAAATTA
Shewanella amazonensis SB2B Sama_1064 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B Sama_1064 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella halifaxensis HAW-EB4 Shal_1245 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella halifaxensis HAW-EB4 Shal_1245 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella halifaxensis HAW-EB4 Shal_1245 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella sediminis HAW-EB3 Ssed_1333 -217 3.8 TATTGTGAAGTCATCCGGATAT
Shewanella woodyi ATCC 51908 Swoo_3321 -288 3.7 TCCAGCGACTTAGATCACATTT
Position: -99
Score: 4.8
Sequence: TAATTTGATTTCAATCAAATTA
Locus tag: PE36_15070
PE36_15070 -99 4.8 TAATTTGATTTCAATCAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3895
Ortholog function: HesA/MoeB/ThiF family protein related to EC-YgdL
Shewanella putrefaciens CN-32 Sputcn32_0780 -317 4.9 AAATGCGATATAGATCACAAAC
Shewanella sp W3-18-1 Sputw3181_3395 -317 4.9 AAATGCGATATAGATCACAAAC
Shewanella sp ANA-3 Shewana3_0735 -308 4.5 AAATGTGATCTTGATCACTTGA
Shewanella sp MR-4 Shewmr4_3226 -309 3.9 AAATGTGATCTGGATCATTGGA
Shewanella sp MR-7 Shewmr7_0763 -309 3.9 AAATGTGATCTGGATCATTGGA
Shewanella baltica OS155 Sbal_3568 -321 5 AAGTGTGATCTGGATCAAGTTT
Shewanella frigidimarina NCIMB 400 Sfri_0504 -251 4 TATCTTGATGAGTTTAACCAAT
Shewanella amazonensis SB2B Sama_0546 -214 4.8 AAGTGTGATCACTATCACATCA
Shewanella loihica PV-4 Shew_3251 -226 4.6 AGGTGTGATCCGTGTCGCAAAT
-196 3.8 TTACGTGAGTTTTATCATGTTG
Shewanella pealeana ATCC 700345 Spea_0591 -259 4.3 ATGTGTGACGCTTGTCACGGTT
Shewanella halifaxensis HAW-EB4 Shal_0678 -253 4.8 GTTTGTGATGTCTATCACGTTT
Shewanella piezotolerans WP3 swp_4512 -245 3.8 CGATGTGATCTTGATCTGGTTT
-215 3.9 ATGTGTGATATTAATCATAGGT
Shewanella sediminis HAW-EB3 Ssed_4007 -324 5 TTTTGTGATTCTTATCACGCAT
-294 4.6 TTGTGTGATATCAATCATCTTT
-200 3.8 TTTTGTGAACTTGATTAACAAG
Shewanella woodyi ATCC 51908 Swoo_4150 -290 5.1 CTTTGTGATATCAATCACAATA
Position: -291
Score: 3.4
Sequence: ATTACTGCTGTTATTCATAATT
Position: -228
Score: 3.5
Sequence: TTTTATGTTTTATTTCGAAGTA
Position: -175
Score: 3.9
Sequence: AATTCTGACTTATTTCTAAATT
Locus tag: PE36_15135
PE36_15135 -291 3.4 ATTACTGCTGTTATTCATAATT
-228 3.5 TTTTATGTTTTATTTCGAAGTA
-175 3.9 AATTCTGACTTATTTCTAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvC
Ortholog function: Ketol-acid reductoisomerase (EC 1.1.1.86)
Shewanella oneidensis MR-1 SO4349 -86 4 TATAGTGACTTCAATCACAACC
Shewanella putrefaciens CN-32 Sputcn32_3615 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp W3-18-1 Sputw3181_3755 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp ANA-3 Shewana3_0355 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp MR-4 Shewmr4_0361 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp MR-7 Shewmr7_3665 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella baltica OS155 Sbal_4032 -85 4.3 TATAGTGATTTCAATCACAACC
Shewanella frigidimarina NCIMB 400 Sfri_0421 -85 4.1 TATAGTGACTTCAATCACAACG
Shewanella amazonensis SB2B Sama_3282 -88 4.4 TATAGTGAGTTCAATCACAATC
Shewanella loihica PV-4 Shew_0288 -126 3.7 CAATGTGACGTTTCGAATATAT
-77 3.8 ATAGTTGATCTCATTCACAGCT
Shewanella piezotolerans WP3 swp_0358 -77 4.6 TATAGTGATCTCAATCACAGCT
Shewanella sediminis HAW-EB3 Ssed_4166 -78 4 TATAGTGATCTCAATCACTGCT
Shewanella woodyi ATCC 51908 Swoo_0441 -78 3.5 TATAGTGAATTCAATCACTGCT
Position: -85
Score: 4.9
Sequence: AAACGTGATACGGATCACTTTT
Locus tag: PE36_04918
PE36_04918 -85 4.9 AAACGTGATACGGATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiA-2
Ortholog function: Ribosome hibernation protein YfiA
Shewanella oneidensis MR-1 SO3422 -78 4.7 AAGTGTGATTTAACTCTCGTTT
Shewanella putrefaciens CN-32 Sputcn32_2740 -77 5.1 TTTTGTGATTTAGATCTCGTTT
Shewanella sp W3-18-1 Sputw3181_1272 -77 5.1 TTTTGTGATTTAGATCTCGTTT
Shewanella sp ANA-3 Shewana3_1133 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-4 Shewmr4_1132 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-7 Shewmr7_1203 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella baltica OS155 Sbal_1221 -77 5.2 AAATGTGATCTAGATCTCGTTT
Shewanella denitrificans OS217 Sden_2746 -77 4.8 AAGTGTGACTTTGATCACGCTT
-38 4.1 TAATCTGAAGTTAAGCACATAA
Shewanella frigidimarina NCIMB 400 Sfri_2912 -77 5 AAGTGTGATGCAGATCACTATT
Shewanella amazonensis SB2B Sama_0899 -78 4.3 AAACGTGATTTTACTCACGACT
Shewanella loihica PV-4 Shew_1073 -76 4.6 AAAGTTGATCTAGATCACGTTT
Shewanella pealeana ATCC 700345 Spea_1060 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella halifaxensis HAW-EB4 Shal_4284 -83 4.6 AAACATGACCTAGATCACACTA
-58 3.8 TAATGTGATTGGACTATTGTAA
Shewanella halifaxensis HAW-EB4 Shal_1108 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella piezotolerans WP3 swp_3757 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella sediminis HAW-EB3 Ssed_1169 -222 3.8 TTTTGAGAGGCAAATAAAAAAA
-76 4.6 AAACGTGATTTAGATCACGACT
Shewanella woodyi ATCC 51908 Swoo_1264 -76 4.5 AAACGTGATCAAGATCACGACT
Position: -63
Score: 3.9
Sequence: TAACGACATTTATTTCACATTA
Locus tag: PE36_10623
PE36_10623 -63 3.9 TAACGACATTTATTTCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: petC
Ortholog function: ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Shewanella oneidensis MR-1 SO0610 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella putrefaciens CN-32 Sputcn32_3274 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp W3-18-1 Sputw3181_0667 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp ANA-3 Shewana3_0603 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-4 Shewmr4_0604 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-7 Shewmr7_3426 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella baltica OS155 Sbal_0564 -131 3.7 CACTATGATCTGCTTCTAATTT
-102 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella frigidimarina NCIMB 400 Sfri_3305 -129 3.8 CACTATGATCTGGTTCTAATTT
Shewanella loihica PV-4 Shew_0572 -130 4.1 TACTATGATCTGCTTCTAATTT
-101 3.9 TAATGAGCCCCGCCTCAAATTT
Shewanella halifaxensis HAW-EB4 Shal_3628 -128 4.6 AACTATGATCTGGCTCAAATTT
Shewanella piezotolerans WP3 swp_0795 -131 4.2 AACTATGATCTGGTTCTAATTT
Shewanella sediminis HAW-EB3 Ssed_0803 -132 4.4 TACTATGATCAAGCTCAAATTT
Shewanella woodyi ATCC 51908 Swoo_4164 -129 3.8 TACTATGATCTGCTTCTGATTT
Position: -40
Score: 3.9
Sequence: GTATGTAAAGTGATTCACACAT
Locus tag: PE36_10658
PE36_10658 -40 3.9 GTATGTAAAGTGATTCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shew_1222
Ortholog function: hypothetical protein
Shewanella loihica PV-4 Shew_1222 -66 5 TAGTGTGATGCAGCTCTCAATA
Shewanella pealeana ATCC 700345 Spea_3260 -217 3.7 TTCAGTGATTTATATCGCCACT
-121 4.4 AAAGGTGAGCTCGATCACAAAC
Shewanella halifaxensis HAW-EB4 Shal_3336 -216 4.5 TTAAGTGATTTGTATCGCCATA
-119 4.8 AATAGTGAGGTGGGTCACAAAT
Shewanella piezotolerans WP3 swp_1085 -105 4.5 AAAGGTGAACTAGATCACAAAG
Shewanella sediminis HAW-EB3 Ssed_1323 -145 5.1 AAAGGTGATCGATATCACATAT
Shewanella woodyi ATCC 51908 Swoo_3332 -69 4 GAAGGTGATTAATATCACGTTA
Position: -115
Score: 3.8
Sequence: ATATGTTATTAACAGCAGAATA
Locus tag: PE36_14440
PE36_14440 -115 3.8 ATATGTTATTAACAGCAGAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mshH
Ortholog function: MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Shewanella oneidensis MR-1 SO4116 -318 4.4 TATTGTAATTTAGTCAACATTT
-132 4.3 AAATGTGACCTAATTGACGTAT
Shewanella putrefaciens CN-32 Sputcn32_0555 -313 4 TATTGTAATTTAGCCAAAATTT
-114 3.8 GAATATGACAGGTTTCACGTTT
Shewanella sp W3-18-1 Sputw3181_3617 -313 4 TATTGTAATTTAGCCAAAATTT
-114 3.8 GAATATGACAGGTTTCACGTTT
Shewanella sp ANA-3 Shewana3_3668 -312 4.2 TATTGTAATTTAATCAACATTT
-119 4.2 GGATATGATGGGTTTCACATTT
Shewanella sp MR-4 Shewmr4_3491 -312 4.2 TATTGTAATTTAATCAACATTT
Shewanella sp MR-7 Shewmr7_0461 -312 4.2 TATTGTAATTTAATCAACATTT
Shewanella denitrificans OS217 Sden_3352 -298 3.8 TCTTGTTATTTAAACAACATTT
-197 4.2 TAATGTGATGCATAGCAGCCTT
Shewanella frigidimarina NCIMB 400 Sfri_3756 -303 4.1 TATTGTTATTTAGACAAAATAA
Shewanella pealeana ATCC 700345 Spea_3773 -196 3.8 TATAGCGATAAAGTTAAAAAAT
Shewanella halifaxensis HAW-EB4 Shal_3858 -196 3.8 TATAGCGATAAAGTTAAAAAAT
Shewanella woodyi ATCC 51908 Swoo_4422 -345 3.8 AAGTTTTATCTAGTTAACCCTT
Position: -117
Score: 4.1
Sequence: TCTTTTGAGATCATTCACACTT
Locus tag: PE36_22065
PE36_22065 -117 4.1 TCTTTTGAGATCATTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3813
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_0820 -116 4.4 TAATGTGATTGGTATAATATAC
Shewanella sp W3-18-1 Sputw3181_3353 -116 4.4 TAATGTGATTGGTATAATATAC
Shewanella sp ANA-3 Shewana3_0784 -142 4.1 AATTGTTAAGTATTTCATATTG
Shewanella sp MR-4 Shewmr4_3154 -142 4.1 AATTGTTAAGTATTTCATATTG
Shewanella sp MR-7 Shewmr7_0813 -142 4.1 AATTGTTAAGTATTTCATATTG
Shewanella sediminis HAW-EB3 Ssed_3441 -203 4.3 TAACGTGATGAAAGTAAAATTT
Position: -76
Score: 4.1
Sequence: AAATGTAATTTAAACCAAACTT
Locus tag: PE36_23902
PE36_23902 -76 4.1 AAATGTAATTTAAACCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Shewanella oneidensis MR-1 SO0162 -150 3.8 CTCAATGATCCAGCTCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3571 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp W3-18-1 Sputw3181_3708 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp ANA-3 Shewana3_0147 -151 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-4 Shewmr4_0152 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-7 Shewmr7_0147 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella amazonensis SB2B Sama_0165 -145 4.1 TTTTCAGATCCGGCTCACACAT
Shewanella loihica PV-4 Shew_3623 -128 4.6 TTTCGCGATCTTCCTCACACAT
Shewanella pealeana ATCC 700345 Spea_0140 -112 4.9 TTTTTTGATCTAGTACACATAT
Shewanella halifaxensis HAW-EB4 Shal_4178 -112 4.8 TTTTTTGATCTTGCCCACATAT
Shewanella piezotolerans WP3 swp_0182 -113 4.9 TTTTTTGATCTAGTCCACATAT
Shewanella sediminis HAW-EB3 Ssed_4362 -142 4.1 AAACACGATCTTCCTCACACAT
Shewanella woodyi ATCC 51908 Swoo_4740 -100 3.8 AATCGTGACATAGCGCAAAGAC
Position: -193
Score: 4
Sequence: TTTTGTCATCTAATTCTAAATT
Locus tag: PE36_11272
PE36_11272 -193 4 TTTTGTCATCTAATTCTAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD1
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella oneidensis MR-1 SO2581 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella putrefaciens CN-32 Sputcn32_1761 -154 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp W3-18-1 Sputw3181_2264 -154 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp ANA-3 Shewana3_2386 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp MR-4 Shewmr4_2177 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp MR-7 Shewmr7_2254 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella baltica OS155 Sbal_1864 -156 5.1 TTATGTGATGATGATCAAAATT
Shewanella denitrificans OS217 Sden_1625 -189 4.1 TTATGTGATTATGGGCCCAAAT
Shewanella frigidimarina NCIMB 400 Sfri_1733 -165 4.7 TTATGTGATTATGATCGAAAAT
Shewanella amazonensis SB2B Sama_1934 -140 4.8 TTATGTGATGATTGTCAAAAAT
Shewanella loihica PV-4 Shew_2188 -149 4.9 TTGTGTGATGATGTTCAAAATT
Shewanella pealeana ATCC 700345 Spea_2448 -156 5 TTATGTGATGATAATCAAAATT
Shewanella halifaxensis HAW-EB4 Shal_1832 -155 5 TTATGTGATGATAATCAAAATT
Shewanella piezotolerans WP3 swp_2289 -153 5 ATATGTGATGATAATCAAAATT
Shewanella sediminis HAW-EB3 Ssed_2523 -151 5 TTATGTGATGATGATCATAATT
Shewanella woodyi ATCC 51908 Swoo_2110 -153 5.1 TTATGTGATGATGTTCAAAATT
Position: 8
Score: 3.7
Sequence: ATTTGTAAGTGCGTTTACGTTT
Locus tag: PE36_10188
PE36_10188 8 3.7 ATTTGTAAGTGCGTTTACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfD-2
Ortholog function: nitrite reductase, quinol dehydrogenase component, NrfD
Shewanella oneidensis MR-1 SO4568 -207 4.4 ATTTGTGAGCTAGTTAGAATTA
Shewanella putrefaciens CN-32 Sputcn32_0315 -99 4.3 AAGTGTGATGCTGGTCAATAAA
Shewanella sp W3-18-1 Sputw3181_3893 -99 4.2 AAGTGTGATACTGGTCAATAAA
Shewanella sp ANA-3 Shewana3_3960 -99 5.2 AAATGTGATCTATGTCAAAAAA
Shewanella sp MR-4 Shewmr4_3762 -99 5.2 AAATGTGATCTATGTCAAAAAA
Shewanella sp MR-7 Shewmr7_3835 -99 5.2 AAATGTGATCTGTGTCAAAAAA
Shewanella baltica OS155 Sbal_0183 -97 5.2 AAATGTGATCGTGTTCAAAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0613 -115 3.7 TTAATTGATTACGATCAATTTA
Shewanella amazonensis SB2B Sama_2904 -285 4.1 AAAAGAGACTTAGATCATATTT
Shewanella loihica PV-4 Shew_3158 -286 3.9 AAAATAGATCTTGATCATATTT
Shewanella pealeana ATCC 700345 Spea_3965 -127 3.4 TTTTATGATGAATAAAACGTTC
Shewanella halifaxensis HAW-EB4 Shal_0303 -100 3.6 ATAATTGATTTGTATCAATGTT
Shewanella piezotolerans WP3 swp_4115 -97 3.3 TTATATAATGATTTTTATATTT
Shewanella sediminis HAW-EB3 Ssed_0243 -100 4.1 TTGTTTGATTTAAATCAAGGTT
Shewanella woodyi ATCC 51908 Swoo_0242 -92 4 TAACTTGATTTGAATCAATATT
Position: -64
Score: 3.7
Sequence: TTATTTTACATACATAACGATA
Locus tag: PE36_14831
PE36_14831 -64 3.7 TTATTTTACATACATAACGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppc
Ortholog function: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Shewanella sp ANA-3 Shewana3_3906 -233 3.7 AATATTGCGTTAGCTCGCATTT
-189 3.7 TATCGCGATTAGTTGCATATAA
Shewanella sp MR-4 Shewmr4_3710 -228 3.7 AATATTGCGTTAGCTCGCATTT
-184 4.3 TATCGTGATTAGTTGCATATAA
Shewanella sp MR-7 Shewmr7_0235 -228 3.7 AATATTGCGTTAGCTCGCATTT
-184 4.3 TATCGTGATTAGTTGCATATAA
Shewanella loihica PV-4 Shew_0200 -107 4.3 CAAGGTGATATAGAACACATAA
Shewanella halifaxensis HAW-EB4 Shal_4095 -106 5 AAAAGTGATATAGAGCACATTA
Shewanella piezotolerans WP3 swp_2053 -106 4.4 TAAAGTGAGGTAGAGCACATTC
Shewanella sediminis HAW-EB3 Ssed_4278 -111 3.9 CCGAGTGATGTAGAGCACATAA
Shewanella woodyi ATCC 51908 Swoo_0327 -111 4.7 AGAAGTGATGTAGAACACATAA
Position: -201
Score: 3.9
Sequence: ATATGGGATCAACCTCTAAATA
Locus tag: PE36_04483
PE36_04483 -201 3.9 ATATGGGATCAACCTCTAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_0687
Ortholog function: L-serine dehydratase (EC 4.3.1.17)
Shewanella frigidimarina NCIMB 400 Sfri_0687 -146 4.1 ATAGTTGATTCAGAACACATTA
Shewanella loihica PV-4 Shew_0740 -188 3.9 AAGTTAGATTCGGCTCACAAAG
Shewanella pealeana ATCC 700345 Spea_0772 -161 4.2 TTAAGAGATCTAGCTCTCAATT
Shewanella halifaxensis HAW-EB4 Shal_0824 -160 4.3 TTAAGCGATCTAGCTCTCAATT
Shewanella piezotolerans WP3 swp_4262 -161 4 ATAAGCGATATAGCTCCCAATA
Shewanella woodyi ATCC 51908 Swoo_0864 -196 4.2 AACTGAGAGGTGGATCACATTG
Position: -205
Score: 4.1
Sequence: AATTGTGATATAGGTATACTTA
Position: -70
Score: 4
Sequence: ATTTGTTATGAAAATAATACAA
Position: -48
Score: 4.2
Sequence: TTCTGTGATCTGTGTCAATATA
Locus tag: PE36_12907
PE36_12907 -205 4.1 AATTGTGATATAGGTATACTTA
-70 4 ATTTGTTATGAAAATAATACAA
-48 4.2 TTCTGTGATCTGTGTCAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Shewanella putrefaciens CN-32 Sputcn32_2273 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1735 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2519 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2187 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2347 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1423 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1784 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2493 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2955 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2818 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1833 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -215
Score: 3.4
Sequence: TTTAGCGACTTCTTAAACATAT
Position: -153
Score: 3.4
Sequence: GTATTTGATGTGGTTAGTACAT
Locus tag: PE36_09091
PE36_09091 -215 3.4 TTTAGCGACTTCTTAAACATAT
-153 3.4 GTATTTGATGTGGTTAGTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella oneidensis MR-1 SO1363 -124 4.2 TAAAGTGATCTTTCTCTAAGAT
Shewanella putrefaciens CN-32 Sputcn32_1174 -124 4.3 TAAGGTGATAACCCTCGCAAAT
Shewanella sp W3-18-1 Sputw3181_2990 -124 4.3 TAAGGTGATAACCCTCGCAAAT
Shewanella sp MR-4 Shewmr4_2832 -124 4 TAAGGTGATCTCCCTCTAAGAT
Shewanella sp MR-7 Shewmr7_2914 -124 3.6 CAAGGTGATCTCTCTCTAAGAT
Shewanella baltica OS155 Sbal_1216 -124 4.1 TAAGGTGATCGTTCTCTAATAT
Shewanella frigidimarina NCIMB 400 Sfri_3609 -125 4 GAAGGTGATGTGGCTCATAAAA
Shewanella amazonensis SB2B Sama_0895 -113 3.6 TAAGATGATCTGCTTCAAGGAA
Shewanella loihica PV-4 Shew_1069 -125 4.5 TAATTTGATCCGCTTCATAGTT
Shewanella pealeana ATCC 700345 Spea_1055 -125 4.5 AAAAGTGATCTCTTTCATAGTT
Shewanella halifaxensis HAW-EB4 Shal_1103 -96 4.3 TAAGGTGATCTCTTTCATGTTT
Shewanella piezotolerans WP3 swp_3762 -42 4.4 TAAGGTGATCTCTTTCATAGTT
Shewanella sediminis HAW-EB3 Ssed_1165 -170 3.4 TAATGCAATTGGTATTATAATT
Shewanella woodyi ATCC 51908 Swoo_1260 -125 4.2 GAATTTGATCTGTCTCAAACTT
Position: -90
Score: 3.7
Sequence: TTATGTGTAATAGTTCTTAATT
Locus tag: PE36_15274
PE36_15274 -90 3.7 TTATGTGTAATAGTTCTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1787
Ortholog function: probable membrane protein YPO2362
Shewanella oneidensis MR-1 SO1787 -149 4.2 AACTGAGATCCTGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1483 -154 4 AACTGAGATCGGGATCACATGA
Shewanella sp W3-18-1 Sputw3181_2618 -154 4 AACTGAGATCGGGATCACATGA
Shewanella sp ANA-3 Shewana3_2668 -151 4.4 AACTGAGATCCTGATCACATAG
Shewanella sp MR-4 Shewmr4_2502 -151 3.7 AACTGAGATCCTGATCACACCG
Shewanella sp MR-7 Shewmr7_2570 -151 3.7 AACTGAGATCCTGATCACACCG
Shewanella baltica OS155 Sbal_1597 -156 4.2 AACTGAGATCCTGATCACACAG
Position: -32
Score: 3.9
Sequence: ATTCGTGAAATTTTTTACAAAG
Locus tag: PE36_10368
PE36_10368 -32 3.9 ATTCGTGAAATTTTTTACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2589
Ortholog function: isopenicillin N synthase
Shewanella frigidimarina NCIMB 400 Sfri_1487 -55 4 AAGTGTGACTAAGGTTACCATT
Shewanella loihica PV-4 Shew_1590 -85 4.3 AAACGTGATTTTTATCACACCC
Shewanella pealeana ATCC 700345 Spea_2507 -84 4.2 AAGCGTGATCTAGCTCACTCAC
Shewanella halifaxensis HAW-EB4 Shal_1764 -84 4.4 CAGCGTGATCTACGTCACATTG
Shewanella piezotolerans WP3 swp_3059 -87 4.2 GAATGTGATCTAGCTCACAGGT
Shewanella sediminis HAW-EB3 Ssed_2637 -51 5.1 AAACGTGATTTCAATCACACTT
Shewanella woodyi ATCC 51908 Swoo_2030 -82 4.2 CAAGGTGATTTATCTCACACAG
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