Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Salmonella enterica subsp. enterica serovar Typhi str. E98-3139

Type Regulator Effector Pathway Genes Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AllR Allantoin Allantoin utilization 2 2
TF AraC Arabinose Arabinose utilization 3 4
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 12 27
TF BirA Biotin Biotin biosynthesis 2 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 226 563
TF CueR Copper ion, (Cu+) Copper resistance 3 3
TF DeoR Deoxyribonucleoside utilization 2 2
TF ExuR Galacturonate Galacturonate utilization 1 2
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 3 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 8 11
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 89 167
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 20 27
TF FucR L-fuculose-1-phosphate Fucose utilization 2 2
TF Fur Iron ion, (Fe2+) Iron homeostasis 29 97
TF GalR/GalS Galactose Galactose utilization 2 2
TF GcvA Glycine Glycine metabolism 1 1
TF GlpR Glycerol 3-phosphate Glycerol utilization 4 5
TF GntR Gluconate Gluconate utilization 3 6
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 2 2
TF HutC cis-Urocanic acid Histidine utilization 2 3
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 3
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 10 12
TF LeuO Guanosine 3',5'-bis(diphosphate) 3 7
TF LexA DNA damage SOS response 19 22
TF LldR L-lactate Lactate utilization 1 1
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MarR Salicylate; Tetracycline; Chloramphenicol Antibiotic resistance 1 2
TF MetR Homocysteine Methionine biosynthesis 6 9
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 4 4
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 6 7
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF NadR NAD NAD biosynthesis 2 2
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 4 6
TF NanR N-acetylneuraminic acid Sialic acid utilization 1 1
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 22 29
TF NhaR Potassium ion Osmotic stress response 1 1
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 1 1
TF NorR Nitric oxide Nitrosative stress response 2 3
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 3 5
TF NsrR Nitric oxide Nitrosative stress response 10 16
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 5 7
TF PdhR Pyruvate Pyruvate metabolism 3 3
TF PhnR 2-aminoethylphosphonate Phosphonate utilization; 2-aminoethylphosphonate utilization 3 3
TF PurR Hypoxanthine; Guanine Purine metabolism 23 32
TF QorR Energy metabolism 1 1
TF RbsR Ribose Ribose utilization 1 1
TF RhaR Rhamnose Rhamnose utilization 2 2
TF RhaS Rhamnose Rhamnose utilization 4 4
TF RutR Uracil Pyrimidine utilization 1 1
TF SdaR Glycerate Glucarate utilization; Galactarate utilization 4 6
TF SiaR Glucosamine-6-phosphate Sialic acid utilization 1 1
TF SoxR Paraquat Superoxide stress response 2 2
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF TrpR Tryptophan Tryptophan biosynthesis 3 3
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 6 11
TF UlaR Ascorbate-6-phosphate Ascorbate utilization 1 2
TF UxuR Glucuronate Glucuronate utilization 2 5
TF YiaJ Ascorbate-6-phosphate L-lyxose utilization 1 1
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 4
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