Propagation of Fnr regulog to Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Salmonella enterica subsp. enterica serovar Typhi str. E98-3139 |
| Orthologous TF(s) | Salmonellentericaenterica_010100000282 |
| Regulated genes | 89 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -73
Score: 5.5 Sequence: TTGATTTATATCAA
Locus tag: Salmonellentericaenterica_010100000005
|
||||
| Salmonellentericaenterica_010100000005 | -73 | 5.5 | TTGATTTATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narK | ||||
| Ortholog function: Nitrate/nitrite antiporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01299 | -229 | 5.5 | TTGATTTATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1223 | -111 | 4.7 | ATGATAAATATCAA |
| -73 | 5.4 | TTGATTTACATCAA | ||
| Salmonella typhimurium LT2 | STM1765 | -73 | 5.5 | TTGATTTATATCAA |
|
Position: -105
Score: 4.7 Sequence: TTGATCGTTATCAA
Locus tag: Salmonellentericaenterica_010100000010
|
||||
| Salmonellentericaenterica_010100000010 | -105 | 4.7 | TTGATCGTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narG | ||||
| Ortholog function: Respiratory nitrate reductase alpha chain (EC 1.7.99.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01301 | -105 | 4.7 | TTGATCGTTATCAA |
| Enterobacter sp. 638 | Ent638_2315 | -100 | 4.7 | TTGATCGTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1224 | -105 | 4.7 | TTGATCGTTATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02214 | -106 | 4.6 | TTGATCGCTATCAA |
| Salmonella typhimurium LT2 | STM1764 | -105 | 4.7 | TTGATCGTTATCAA |
|
Position: -33
Score: 4.7 Sequence: TTGACAAATATCAA
Locus tag: Salmonellentericaenterica_010100000282
|
||||
| Salmonellentericaenterica_010100000282 | -33 | 4.7 | TTGACAAATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fnr | ||||
| Ortholog function: Fumarate and nitrate reduction regulatory protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01409 | -83 | 3.8 | TTGATGTAAAGTAA |
| Edwardsiella tarda EIB202 | ETAE_1744 | -133 | 3.4 | GTGCTATACATCAC |
| -33 | 4.6 | TTGACCGATATCAA | ||
| Enterobacter sp. 638 | Ent638_1853 | -33 | 4.6 | TTGACCAATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2207 | -34 | 4.6 | TTGACCAATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1334 | -33 | 4.7 | TTGACAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01530 | -327 | 4.6 | TTGACCAATATCAA |
| -185 | 3.5 | ATGAGCTTGATCAG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2179 | -35 | 3.4 | TTGAAGGATATGAA |
| Proteus mirabilis HI4320 | PMI1203 | -40 | 4.5 | TTGACACATATCAA |
| Salmonella typhimurium LT2 | STM1660.S | -33 | 4.7 | TTGACAAATATCAA |
| Serratia proteamaculans 568 | Spro_2582 | -34 | 4.4 | TTGACGCATATCAA |
| Yersinia pestis KIM | y2132 | -32 | 4.4 | TTGACGCATATCAA |
|
Position: -116
Score: 4.7 Sequence: CTGATTTCAATCAA
Locus tag: Salmonellentericaenterica_010100000477
|
||||
| Salmonellentericaenterica_010100000477 | -116 | 4.7 | CTGATTTCAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -116 | 4.7 | CTGATTTCAATCAA |
| Edwardsiella tarda EIB202 | ETAE_0658 | -165 | 4.5 | TTGATTGTTAACAA |
| -139 | 5 | ATGATTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_0659 | -116 | 4.7 | CTGATTTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -116 | 4.2 | GTGATTTAGCTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -115 | 4.8 | ATGATTTCAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -114 | 4.7 | CTGATTTCAATCAA |
| Proteus mirabilis HI4320 | PMI2047 | -245 | 4 | ATGTGTTTAATCAA |
| -134 | 4.2 | ATGATTTCGCTCAA | ||
| Salmonella typhimurium LT2 | STM0151 | -116 | 4.7 | CTGATTTCAATCAA |
| Serratia proteamaculans 568 | Spro_4012 | -117 | 4.6 | CTGATTTCGATCAA |
| Yersinia pestis KIM | y0766 | -135 | 4.4 | ATGATTTCGGTCAA |
|
Position: 34
Score: 3.7 Sequence: TTGACGGCAATCAG
Locus tag: Salmonellentericaenterica_010100001349
|
||||
| Salmonellentericaenterica_010100001349 | 34 | 3.7 | TTGACGGCAATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hypC | ||||
| Ortholog function: [NiFe] hydrogenase metallocenter assembly protein HypC | ||||
| Salmonella typhimurium LT2 | STM2856 | -88 | 3.7 | TTGATGAAACTGAA |
|
Position: 3
Score: 4 Sequence: TTTACCTTTATCAA
Locus tag: Salmonellentericaenterica_010100001394
|
||||
| Salmonellentericaenterica_010100001394 | 3 | 4 | TTTACCTTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyfH | ||||
| Ortholog function: Hydrogenase-4 component H (EC 1.-.-.-) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1240 | -91 | 3.5 | TTGAATTAAAGAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2488 | -29 | 3.8 | ATGTTTCATATCAT |
| Proteus mirabilis HI4320 | PMI2521 | -114 | 4.9 | TTGATTTTTAACAA |
|
Position: -143
Score: 3.5 Sequence: ATAATATAAATTAA
Locus tag: Salmonellentericaenterica_010100001664
|
||||
| Salmonellentericaenterica_010100001664 | -143 | 3.5 | ATAATATAAATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybdN | ||||
| Ortholog function: Predicted sulfotransferase | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02557 | -295 | 3.8 | TTAATATTGATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0602 | -359 | 3.7 | TTGCTGACAATCAT |
| -150 | 4.2 | TTGATATATAACTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00647 | -221 | 3.5 | ACGATCTACATTAA |
|
Position: -97
Score: 3.6 Sequence: TTACCTTTAATCAA
Locus tag: Salmonellentericaenterica_010100002436
|
||||
| Salmonellentericaenterica_010100002436 | -97 | 3.6 | TTACCTTTAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yecR | ||||
| Ortholog function: putative outer membrane lipoprotein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01043 | -288 | 3.7 | CTGTTTTCCATCAT |
| Salmonella typhimurium LT2 | STM1934 | -97 | 3.6 | TTACCTTTAATCAA |
|
Position: -332
Score: 3.9 Sequence: TTTAGTGATATCAA
Position: -328
Score: 4.1 Sequence: GTGATATCAAACAA
Locus tag: Salmonellentericaenterica_010100004059
|
||||
| Salmonellentericaenterica_010100004059 | -332 | 3.9 | TTTAGTGATATCAA | |
| -328 | 4.1 | GTGATATCAAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pitA | ||||
| Ortholog function: Phosphate transporter, low-affinity | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0048 | -140 | 4 | TTGATTTATATTGA |
| Escherichia coli str. K-12 substr. MG1655 | b3493 | -116 | 3.8 | TTGAGTGAAATCCA |
| Salmonella typhimurium LT2 | STM3589 | -116 | 4.2 | GTGATATCAAACAA |
| Yersinia pestis KIM | y3862 | -201 | 4.1 | TTGAATAAAATCAT |
|
Position: -345
Score: 3.9 Sequence: TTAATGTTTGTCAA
Position: 25
Score: 3.6 Sequence: ATGTGAAAAAACAA
Locus tag: Salmonellentericaenterica_010100004316
|
||||
| Salmonellentericaenterica_010100004316 | -345 | 3.9 | TTAATGTTTGTCAA | |
| 25 | 3.6 | ATGTGAAAAAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02438 | 25 | 3.6 | ATGTGAAAAAACAA |
| Edwardsiella tarda EIB202 | ETAE_2588 | 10 | 4 | |
| Escherichia coli str. K-12 substr. MG1655 | b0721 | 10 | 3.6 | ATGTGAAAAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00728 | -104 | 3.6 | ATGTGAAAAAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1426 | -127 | 4 | TTGTGAAAAAACAA |
| Proteus mirabilis HI4320 | PMI0565 | -2 | 4 | TTGTGAAAAAACAA |
| Salmonella typhimurium LT2 | STM0732 | 10 | 3.6 | ATGTGAAAAAACAA |
| Serratia proteamaculans 568 | Spro_1263 | -249 | 4.1 | GTGATCTAAATCAC |
| Yersinia pestis KIM | y3071 | -224 | 3.8 | ATGTTATCAATCAG |
|
Position: -89
Score: 4.8 Sequence: TTCATATAAATCAA
Locus tag: Salmonellentericaenterica_010100004661
|
||||
| Salmonellentericaenterica_010100004661 | -89 | 4.8 | TTCATATAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: norV | ||||
| Ortholog function: Anaerobic nitric oxide reductase flavorubredoxin | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04064 | -90 | 4.2 | TTATTTAAAATCAA |
| Enterobacter sp. 638 | Ent638_3182 | -147 | 4.1 | TTGACAGTAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03045 | -53 | 3.7 | TTGATATAAGCCAG |
| Salmonella typhimurium LT2 | STM2840 | -89 | 3.7 | TCAATACAAATCAA |
|
Position: -344
Score: 3.3 Sequence: TTGACCGCCGTCAT
Locus tag: Salmonellentericaenterica_010100004716
|
||||
| Salmonellentericaenterica_010100004716 | -344 | 3.3 | TTGACCGCCGTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydeJ | ||||
| Ortholog function: Competence/damage-inducible protein CinA | ||||
| Edwardsiella tarda EIB202 | ETAE_2862 | -5 | 3.4 | TCGCTATGGAACAA |
| Enterobacter sp. 638 | Ent638_3132 | -81 | 4.1 | TTCAGTAAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1537 | -195 | 3.5 | TTGTTATAAGGCAT |
| 7 | 3.5 | TTAATAGAGATAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03032 | -26 | 3.5 | TTTATCCAGAGCAA |
| Proteus mirabilis HI4320 | PMI0374 | -19 | 3.5 | TCGAGGTGAAACAA |
| Salmonella typhimurium LT2 | STM2830 | -347 | 3.3 | TTGACCGCCGTCAT |
| Salmonella typhimurium LT2 | STM1514 | -238 | 3.6 | GTCATATGCATCAA |
| Yersinia pestis KIM | y0880 | -297 | 3.7 | TTGATCGCAGTTAA |
|
Position: -204
Score: 4.4 Sequence: TTGAGCCATATCAA
Locus tag: Salmonellentericaenterica_010100006146
|
||||
| Salmonellentericaenterica_010100006146 | -204 | 4.4 | TTGAGCCATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04830 | -204 | 4.1 | TTGAGCCATGTCAA |
| Enterobacter sp. 638 | Ent638_3821 | -133 | 4.2 | TTGAGCAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3408 | -203 | 4.4 | TTGAGCCACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03778 | -198 | 3.8 | TTGCGGCATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0209 | -206 | 3.5 | TGGATGCAAATCAT |
| Proteus mirabilis HI4320 | PMI2920 | -190 | 5.2 | TTGATGTACATCAA |
| Salmonella typhimurium LT2 | STM3505 | -204 | 4.4 | TTGAGCCATATCAA |
| Serratia proteamaculans 568 | Spro_4628 | -284 | 3.8 | CTGATTTAACTCAC |
| Yersinia pestis KIM | y3912 | -93 | 4 | ATTATTTAAATCAT |
|
Position: 16
Score: 3.7 Sequence: TCAATAAAGATCAA
Locus tag: Salmonellentericaenterica_010100006191
|
||||
| Salmonellentericaenterica_010100006191 | 16 | 3.7 | TCAATAAAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malP | ||||
| Ortholog function: Maltodextrin phosphorylase (EC 2.4.1.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04838 | -73 | 3.7 | ATGAGGAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3417 | -340 | 4 | ATGATCTTAATAAA |
| -75 | 3.7 | ATGAGGAAGGTCAA | ||
| Salmonella typhimurium LT2 | STM3514 | 16 | 3.7 | TCAATAAAGATCAA |
| Serratia proteamaculans 568 | Spro_4636 | -359 | 3.8 | TTGCTATTGATCAC |
|
Position: -110
Score: 4.4 Sequence: TTGCGCTAAATCAA
Locus tag: Salmonellentericaenterica_010100006716
|
||||
| Salmonellentericaenterica_010100006716 | -110 | 4.4 | TTGCGCTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02206 | -76 | 4.4 | TTGCGCTAAATCAA |
| Enterobacter sp. 638 | Ent638_1390 | -110 | 4.4 | TTGCGCTAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00907 | -76 | 4.4 | TTGCGCTAAATCAA |
|
Position: -69
Score: 4.4 Sequence: TTGACGCACATCAA
Locus tag: Salmonellentericaenterica_010100007151
|
||||
| Salmonellentericaenterica_010100007151 | -69 | 4.4 | TTGACGCACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybiY | ||||
| Ortholog function: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02286 | -70 | 4.1 | TTGACCTGCGTCAA |
| Edwardsiella tarda EIB202 | ETAE_0451 | -71 | 5.2 | TTGATCAAAATCAA |
| Enterobacter sp. 638 | Ent638_1318 | -68 | 4.4 | TTGACGCACATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0824 | -67 | 4.4 | TTGACGCACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00858 | -69 | 4.7 | TTGATTTGCGTCAA |
| Salmonella typhimurium LT2 | STM0844 | -69 | 4.4 | TTGACGCACATCAA |
| Serratia proteamaculans 568 | Spro_2641 | -76 | 5.1 | TTGATCGAAATCAA |
|
Position: -301
Score: 3.9 Sequence: TTGATTAAACACAG
Locus tag: Salmonellentericaenterica_010100007486
|
||||
| Salmonellentericaenterica_010100007486 | -301 | 3.9 | TTGATTAAACACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnA | ||||
| Ortholog function: Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99) | ||||
| Enterobacter sp. 638 | Ent638_2192 | -135 | 4.6 | TTGTTTTATCTCAA |
| Erwinia amylovora ATCC 49946 | EAM_1866 | 37 | 4.4 | TGGATGTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1941 | -98 | 3.7 | ATGAGCTTACTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1276 | -133 | 3.7 | TTGCTTTGCCACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2432 | 7 | 4.6 | TTGATTTAAAAAAA |
| Salmonella typhimurium LT2 | STM1712 | -301 | 3.9 | TTGATTAAACACAG |
| Yersinia pestis KIM | y2063 | -37 | 3.9 | TTGAATTAAAACAC |
|
Position: -147
Score: 4.8 Sequence: TTGATATATATCAT
Locus tag: Salmonellentericaenterica_010100007781
|
||||
| Salmonellentericaenterica_010100007781 | -147 | 4.8 | TTGATATATATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybhK | ||||
| Ortholog function: Predicted transferase, NAD(P)-binding | ||||
| Edwardsiella tarda EIB202 | ETAE_2348 | -92 | 3.9 | TTGATACATGTCAC |
| Enterobacter sp. 638 | Ent638_1272 | -90 | 4.5 | TTGATATACGTCAT |
| Erwinia amylovora ATCC 49946 | EAM_1217 | -88 | 4 | TTGATATATAGCGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2818 | -117 | 3.7 | ATGAGCTTACTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0780 | -147 | 4.8 | TTGATATACATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00809 | -91 | 4 | TTGATGTCGGTCAG |
| Salmonella typhimurium LT2 | STM0801 | -146 | 4.8 | TTGATATATATCAT |
| Yersinia pestis KIM | y3024 | -190 | 4.2 | TTGTTTAAAATCAC |
|
Position: -264
Score: 4.9 Sequence: ATGATATATATCAA
Locus tag: Salmonellentericaenterica_010100007786
|
||||
| Salmonellentericaenterica_010100007786 | -264 | 4.9 | ATGATATATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02345 | -253 | 4.7 | CTGATGTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2347 | -380 | 3.9 | GTGACATGTATCAA |
| Enterobacter sp. 638 | Ent638_1273 | -236 | 4.4 | ATGACGTATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1218 | -212 | 4.2 | TCGCTATATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2817 | -321 | 3.5 | ATGACCTGAGACAA |
| Escherichia coli str. K-12 substr. MG1655 | b0781 | -263 | 4.9 | ATGATGTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00810 | -257 | 4 | CTGACCGACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1499 | -155 | 3.7 | TCGTTTTACATTAA |
| Salmonella typhimurium LT2 | STM0802 | -264 | 5 | ATGATATATATCAA |
| Serratia proteamaculans 568 | Spro_1320 | -312 | 3.7 | GTGATTCCGGTCAA |
| Yersinia pestis KIM | y3023 | -310 | 4.3 | GTGATTTTAAACAA |
|
Position: -282
Score: 4.4 Sequence: TTGACTAACGTCAA
Locus tag: Salmonellentericaenterica_010100008628
|
||||
| Salmonellentericaenterica_010100008628 | -282 | 4.4 | TTGACTAACGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjiH | ||||
| Ortholog function: putative inner membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4330 | -5 | 3.9 | TTGTTATGACACAA |
| Salmonella typhimurium LT2 | STM4514.S | -283 | 4.4 | TTGACTAACGTCAA |
|
Position: -42
Score: 3.4 Sequence: TCGATCTGGGTCAT
Locus tag: Salmonellentericaenterica_010100008643
|
||||
| Salmonellentericaenterica_010100008643 | -42 | 3.4 | TCGATCTGGGTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: iadA | ||||
| Ortholog function: Isoaspartyl dipeptidase (EC 3.4.19.5) @ Asp-X dipeptidase | ||||
| Edwardsiella tarda EIB202 | ETAE_1362 | 22 | 3.4 | CCGACGTCTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4328 | -5 | 3.9 | TTGTTATGACACAA |
| Salmonella typhimurium LT2 | STM4512 | -283 | 4.4 | TTGACTAACGTCAA |
|
Position: -208
Score: 5.5 Sequence: TTGATTTAAATCAA
Position: -155
Score: 5.1 Sequence: TTGTTTTACATCAA
Locus tag: Salmonellentericaenterica_010100008713
|
||||
| Salmonellentericaenterica_010100008713 | -208 | 5.5 | TTGATTTAAATCAA | |
| -155 | 5.1 | TTGTTTTACATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ung | ||||
| Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00204 | -209 | 5.6 | TTGATTTAAATCAA |
| -156 | 5.1 | TTGTTTTACATCAA | ||
| Edwardsiella tarda EIB202 | ETAE_2734 | -396 | 4.1 | TTGAGATAGAGCAA |
| -280 | 5.4 | TTGATCTAAATCAA | ||
| -227 | 4.7 | ATGTTTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_3065 | -194 | 5 | TTGACCTAAATCAA |
| -142 | 5.1 | TTGTTTTATATCAA | ||
| 34 | 4.2 | CTGATGAAAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2526 | -177 | 4.9 | TTGATGCAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3289 | -228 | 5.1 | TTGACTTAAATCAA |
| -175 | 5.1 | TTGTTTTATATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b2580 | -197 | 5.6 | TTGATTTAAATCAA |
| -144 | 5.1 | TTGTTTTACATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02903 | -206 | 5.5 | TTGATATAAATCAA |
| -153 | 5.1 | TTGTTTTACATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3371 | -233 | 4.1 | TTGATTCAGAACAG |
| Proteus mirabilis HI4320 | PMI1899 | -221 | 5.1 | TTGATAAATATCAA |
| -168 | 5.2 | TTGTTTTAAATCAA | ||
| Salmonella typhimurium LT2 | STM2647 | -208 | 5.6 | TTGATTTAAATCAA |
| -155 | 5.1 | TTGTTTTACATCAA | ||
| Serratia proteamaculans 568 | Spro_3683 | -222 | 5 | TTGATTAAAGTCAA |
| -169 | 4.4 | ATGTTTTATGTCAA | ||
| Yersinia pestis KIM | y1281 | -213 | 5.2 | TTGATTCAAATCAA |
| -160 | 4.7 | ATGTTTTATATCAA | ||
|
Position: -124
Score: 5.5 Sequence: TTGATTTAAATCAA
Locus tag: Salmonellentericaenterica_010100008718
|
||||
| Salmonellentericaenterica_010100008718 | -124 | 5.5 | TTGATTTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiD | ||||
| Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00205 | -176 | 5.1 | |
| -123 | 5.6 | |||
| Enterobacter sp. 638 | Ent638_3064 | -172 | 5.2 | |
| -120 | 5.1 | |||
| Salmonella typhimurium LT2 | STM2646 | -177 | 5.1 | |
| -124 | 5.6 | |||
|
Position: -131
Score: 4.3 Sequence: TTGTCTTAAATCAT
Locus tag: Salmonellentericaenterica_010100010710
|
||||
| Salmonellentericaenterica_010100010710 | -131 | 4.3 | TTGTCTTAAATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemA | ||||
| Ortholog function: Glutamyl-tRNA reductase (EC 1.2.1.70) | ||||
| Enterobacter sp. 638 | Ent638_2338 | -82 | 4.3 | TTGTCTTAAATCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2189 | -134 | 4.8 | |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02235 | -143 | 4.4 | TTGTCTGAAATCAA |
| Salmonella typhimurium LT2 | STM1777 | -131 | 4.3 | TTGTCTTAAATCAT |
|
Position: -184
Score: 4.6 Sequence: TTGATTGAAATCAG
Locus tag: Salmonellentericaenterica_010100010960
|
||||
| Salmonellentericaenterica_010100010960 | -184 | 4.6 | TTGATTGAAATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tdcA | ||||
| Ortholog function: Threonine catabolism transcriptional regulator TdcA, LysR family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04518 | -183 | 4.2 | TTGACAAAAATCAT |
| Edwardsiella tarda EIB202 | ETAE_0893 | -131 | 3.8 | TTGCTCTTTATAAA |
| Enterobacter sp. 638 | Ent638_3565 | -184 | 4.5 | TTGATCAATATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b3118 | -183 | 4.2 | TTGACAAAAATCAG |
| Salmonella typhimurium LT2 | STM3245 | -184 | 4.7 | TTGATTGAAATCAG |
|
Position: -184
Score: 3.8 Sequence: TTGATTGTTAAAAA
Position: -126
Score: 4 Sequence: CTGACCTGAATCAA
Locus tag: Salmonellentericaenterica_010100011470
|
||||
| Salmonellentericaenterica_010100011470 | -184 | 3.8 | TTGATTGTTAAAAA | |
| -126 | 4 | CTGACCTGAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfkA | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03085 | -132 | 4 | CTGACCTGAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3450 | -223 | 4 | CTGACCTGAATCAA |
| Enterobacter sp. 638 | Ent638_4056 | -174 | 4 | CTGACCTGAATCAA |
| Erwinia amylovora ATCC 49946 | EAM_0103 | -31 | 4 | ATTATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4307 | -140 | 4 | CTGACCTGAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3916 | -125 | 4 | CTGACCTGAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04223 | -123 | 4 | CTGACCTGAATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4774 | -203 | 4.1 | TTGATCTCAAAAAA |
| Proteus mirabilis HI4320 | PMI3203 | -194 | 3.7 | TTAATGCGCATCAA |
| Salmonella typhimurium LT2 | STM4062 | -126 | 4 | CTGACCTGAATCAA |
| Serratia proteamaculans 568 | Spro_4807 | -145 | 4.1 | GTGACTTGAATCAA |
| Yersinia pestis KIM | y0059 | -148 | 4.2 | CTGACTTGAATCAA |
|
Position: -291
Score: 5 Sequence: TTGATATATGTCAA
Locus tag: Salmonellentericaenterica_010100012200
|
||||
| Salmonellentericaenterica_010100012200 | -291 | 5 | TTGATATATGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arcA | ||||
| Ortholog function: Aerobic respiration control protein arcA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03387 | -291 | 5.1 | TTGATATATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_0561 | -300 | 5.1 | TTGATATATGTCAA |
| Enterobacter sp. 638 | Ent638_0562 | -291 | 5.1 | TTGATATATGTCAA |
| Erwinia amylovora ATCC 49946 | EAM_0640 | -399 | 4.5 | TTGATGCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3893 | -339 | 5.1 | TTGATATATGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4401 | -291 | 5.1 | TTGATATATGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04856 | -291 | 5.1 | TTGATATATGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0562 | -282 | 4.9 | TTGATGTACGTCAA |
| Proteus mirabilis HI4320 | PMI3719 | -343 | 4 | ATTACATAAATCAA |
| -282 | 4.6 | TTGATATGTGTCAA | ||
| Salmonella typhimurium LT2 | STM4598 | -291 | 5.1 | TTGATATATGTCAA |
| Serratia proteamaculans 568 | Spro_0681 | -299 | 5.1 | TTGATATATGTCAA |
| Yersinia pestis KIM | y3721 | -298 | 5.1 | TTGATATATGTCAA |
|
Position: -106
Score: 3.8 Sequence: CTGTTCTTCGTCAA
Locus tag: Salmonellentericaenterica_010100012485
|
||||
| Salmonellentericaenterica_010100012485 | -106 | 3.8 | CTGTTCTTCGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: caiA | ||||
| Ortholog function: Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03344 | -218 | 3.7 | TTGTTTTACATTGA |
| Edwardsiella tarda EIB202 | ETAE_2663 | -230 | 3.6 | TTCATTATAATCAC |
| Escherichia coli str. K-12 substr. MG1655 | b0039 | -203 | 3.7 | TTAATCAAAATTAA |
| Proteus mirabilis HI4320 | PMI2655 | -118 | 4.2 | TTGATTATGATAAA |
|
Position: -101
Score: 3.8 Sequence: TTGATTGAGTTCAG
Locus tag: Salmonellentericaenterica_010100012755
|
||||
| Salmonellentericaenterica_010100012755 | -101 | 3.8 | TTGATTGAGTTCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phoU | ||||
| Ortholog function: Phosphate transport system regulatory protein PhoU | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00061 | -243 | 4.4 | CTGTTTTTAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3542 | -93 | 3.8 | TTTACTGTCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4473 | -52 | 3.6 | CTGATTGATAACGA |
| Escherichia coli str. K-12 substr. MG1655 | b3724 | -138 | 3.8 | CTTATTTAAATCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0218 | -33 | 3.9 | TTGTTGATTCTCAA |
| Proteus mirabilis HI4320 | PMI2897 | -46 | 4 | TTGATAGATGTCGA |
|
Position: -122
Score: 4.1 Sequence: TTGTTTGAAATCAC
Locus tag: Salmonellentericaenterica_010100012885
|
||||
| Salmonellentericaenterica_010100012885 | -122 | 4.1 | TTGTTTGAAATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase protein I | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -122 | 4.2 | TTGTTTGAAATCAC |
| Enterobacter sp. 638 | Ent638_4125 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3481 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04144 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0047 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3057 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3872 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: -110
Score: 4.7 Sequence: TTGATACCAATCAA
Locus tag: Salmonellentericaenterica_010100013595
|
||||
| Salmonellentericaenterica_010100013595 | -110 | 4.7 | TTGATACCAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhjA | ||||
| Ortholog function: Cytochrome c551 peroxidase (EC 1.11.1.5) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04957 | -73 | 4.7 | TTGATACTTATCAA |
| Edwardsiella tarda EIB202 | ETAE_1715 | -117 | 4.3 | TTGACACTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3518 | -121 | 4.7 | TTGATTCCTATCAA |
| Salmonella typhimurium LT2 | STM3820 | -110 | 4.7 | TTGATACCAATCAA |
| Salmonella typhimurium LT2 | STM3820 | -110 | 4.7 | TTGATACCAATCAA |
| Serratia proteamaculans 568 | Spro_1968 | -89 | 4.6 | TTGATTATCGTCAA |
| Yersinia pestis KIM | y0848 | -152 | 4.7 | TTGATAAAGGTCAA |
|
Position: -238
Score: 3.6 Sequence: GTCATATGCATCAA
Locus tag: Salmonellentericaenterica_010100014402
|
||||
| Salmonellentericaenterica_010100014402 | -238 | 3.6 | GTCATATGCATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydeJ | ||||
| Ortholog function: Competence/damage-inducible protein CinA | ||||
| Edwardsiella tarda EIB202 | ETAE_2862 | -5 | 3.4 | TCGCTATGGAACAA |
| Enterobacter sp. 638 | Ent638_3132 | -81 | 4.1 | TTCAGTAAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1537 | -195 | 3.5 | TTGTTATAAGGCAT |
| 7 | 3.5 | TTAATAGAGATAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03032 | -26 | 3.5 | TTTATCCAGAGCAA |
| Proteus mirabilis HI4320 | PMI0374 | -19 | 3.5 | TCGAGGTGAAACAA |
| Salmonella typhimurium LT2 | STM2830 | -347 | 3.3 | TTGACCGCCGTCAT |
| Salmonella typhimurium LT2 | STM1514 | -238 | 3.6 | GTCATATGCATCAA |
| Yersinia pestis KIM | y0880 | -297 | 3.7 | TTGATCGCAGTTAA |
|
Position: -249
Score: 4.9 Sequence: TTGTTCTACATCAA
Position: -218
Score: 4.2 Sequence: TTGATGCAAATCAC
Locus tag: Salmonellentericaenterica_010100015616
|
||||
| Salmonellentericaenterica_010100015616 | -249 | 4.9 | TTGTTCTACATCAA | |
| -218 | 4.2 | TTGATGCAAATCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03580 | -235 | 4.2 | TTGATGCAAATCAC |
| Edwardsiella tarda EIB202 | ETAE_0423 | -196 | 4.7 | TTGATTCAGGTCAA |
| Enterobacter sp. 638 | Ent638_0437 | -244 | 4.7 | TTGTTCTGAATCAA |
| -213 | 4.2 | TTGATGCAAATCAC | ||
| Erwinia amylovora ATCC 49946 | EAM_3059 | -106 | 4.2 | TTGCTTCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0375 | -182 | 4.8 | TTGCTCTACATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4238 | -249 | 4.8 | TTGAGCTACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04646 | -248 | 4.2 | TTGTTCTGGGTCAA |
| -217 | 4.2 | TTGATGCAAATCAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4499 | -160 | 4.7 | TTGTTTCAGATCAA |
| Proteus mirabilis HI4320 | PMI3451 | -184 | 4.9 | TTGATTTAGATCAG |
| Salmonella typhimurium LT2 | STM4452 | -249 | 5 | TTGTTCTACATCAA |
| -218 | 4.2 | TTGATGCAAATCAC | ||
| Serratia proteamaculans 568 | Spro_0525 | -217 | 4.7 | TTGTTCTACGTCAA |
| Yersinia pestis KIM | y0733 | -192 | 4.6 | TTGTTCTAGGTCAA |
|
Position: -196
Score: 4.6 Sequence: TTGATGTAAATTAA
Locus tag: Salmonellentericaenterica_010100016967
|
||||
| Salmonellentericaenterica_010100016967 | -196 | 4.6 | TTGATGTAAATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoA | ||||
| Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00508 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2385 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2288 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02678 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3089 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2328 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3308 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1630 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -92
Score: 4.1 Sequence: ATGATGTTAATCAT
Locus tag: Salmonellentericaenterica_010100017017
|
||||
| Salmonellentericaenterica_010100017017 | -92 | 4.1 | ATGATGTTAATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackA | ||||
| Ortholog function: Acetate kinase (EC 2.7.2.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00498 | -92 | 4.1 | ATGATGTTAATCAT |
| Edwardsiella tarda EIB202 | ETAE_2397 | -93 | 4.1 | ATGATGTTAATCAT |
| Enterobacter sp. 638 | Ent638_2840 | -92 | 4.1 | ATGATGTTAATCAT |
| Erwinia amylovora ATCC 49946 | EAM_2301 | -119 | 3.9 | TTGCTTTCGGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3039 | -91 | 4.1 | ATGATGTTAATCAT |
| Escherichia coli str. K-12 substr. MG1655 | b2296 | -92 | 4.1 | ATGATGTTAATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02687 | -91 | 4.1 | ATGATGTTAATCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3095 | -117 | 4.1 | ATGATGTTAATCAT |
| Proteus mirabilis HI4320 | PMI1771 | -165 | 3.7 | TTGATGATTGGCAA |
| Salmonella typhimurium LT2 | STM2337 | -92 | 4.1 | ATGATGTTAATCAT |
| Serratia proteamaculans 568 | Spro_3316 | -121 | 4.1 | ATGATGTTAATCAT |
| Yersinia pestis KIM | y1622 | -163 | 4.1 | ATGATGTTAATCAT |
|
Position: -101
Score: 4.1 Sequence: GTGATTTTAATCAG
Locus tag: Salmonellentericaenterica_010100017677
|
||||
| Salmonellentericaenterica_010100017677 | -101 | 4.1 | GTGATTTTAATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuC | ||||
| Ortholog function: C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02537 | -106 | 4.7 | TTGATTTTAATCAG |
| Edwardsiella tarda EIB202 | ETAE_1192 | -147 | 4.1 | TTGACCAATATCAG |
| Enterobacter sp. 638 | Ent638_1152 | -102 | 4.4 | TTGATTTTAGTCAT |
| Escherichia coli str. K-12 substr. MG1655 | b0621 | -103 | 4.7 | TTGATTTTAATCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00654 | -104 | 4.5 | TTGATTTGCATCAG |
| Proteus mirabilis HI4320 | PMI0652 | -127 | 4.5 | TTGATATATGTCAT |
| Salmonella typhimurium LT2 | STM0627 | -138 | 3.6 | TTCATCTTTAGCAA |
| -101 | 4.1 | GTGATTTTAATCAG | ||
| Serratia proteamaculans 568 | Spro_1579 | -107 | 4 | TTGACGGATATCAT |
|
Position: -42
Score: 3.3 Sequence: TTGCTTATTAATAA
Locus tag: Salmonellentericaenterica_010100018127
|
||||
| Salmonellentericaenterica_010100018127 | -42 | 3.3 | TTGCTTATTAATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepT | ||||
| Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01926 | -42 | 3.3 | TTGCTTATTAATAA |
| Escherichia coli str. K-12 substr. MG1655 | b1127 | -121 | 3.7 | TTTATATTCATTAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01133 | -347 | 3.5 | TTGTTGATGGTCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2810 | -156 | 3.8 | TTGATGAAAAGCAT |
| Proteus mirabilis HI4320 | PMI0882 | -92 | 3.7 | TTGATTTAATTAAT |
| Salmonella typhimurium LT2 | STM1227 | -375 | 4.1 | TTGTTAATGGTCAA |
| Serratia proteamaculans 568 | Spro_2009 | -96 | 3.6 | ATGATTTCCGTTAA |
| Yersinia pestis KIM | y1791 | -23 | 4 | TTGATCATGATCAC |
|
Position: -274
Score: 4.8 Sequence: TTGATTGTGATCAA
Position: -213
Score: 3.4 Sequence: ATTATAAAAATTAA
Position: -177
Score: 3.8 Sequence: CTGATGAAAATAAA
Position: -138
Score: 3.3 Sequence: TTAATTAACGACAT
Locus tag: Salmonellentericaenterica_010100020068
|
||||
| Salmonellentericaenterica_010100020068 | -274 | 4.8 | TTGATTGTGATCAA | |
| -213 | 3.4 | ATTATAAAAATTAA | ||
| -177 | 3.8 | CTGATGAAAATAAA | ||
| -138 | 3.3 | TTAATTAACGACAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuS | ||||
| Ortholog function: Fumarate respiration sensor kinase protein DcuS | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03745 | -199 | 3.3 | GTGATCCCCATCAG |
| Enterobacter sp. 638 | Ent638_2555 | -122 | 3.7 | TTTATATAGGTCAC |
| Erwinia amylovora ATCC 49946 | EAM_1542 | -115 | 3.4 | TTGCTTAAGATCGT |
| Escherichia coli str. K-12 substr. MG1655 | b4125 | -311 | 3.6 | TTGAGATTAAATAA |
| Salmonella typhimurium LT2 | STM4304 | -274 | 4.8 | TTGATTGTGATCAA |
| -177 | 3.9 | CTGATGAAAATAAA | ||
| Serratia proteamaculans 568 | Spro_1959 | -188 | 3.3 | TTAATGGCTATCAT |
|
Position: -155
Score: 3.4 Sequence: ATTACTTAAAGCAA
Position: -72
Score: 3.4 Sequence: TTCACACAAATCAG
Locus tag: Salmonellentericaenterica_010100020078
|
||||
| Salmonellentericaenterica_010100020078 | -155 | 3.4 | ATTACTTAAAGCAA | |
| -72 | 3.4 | TTCACACAAATCAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuB | ||||
| Ortholog function: C4-dicarboxylate transporter DcuB | ||||
| Edwardsiella tarda EIB202 | ETAE_2844 | -271 | 3.4 | TTATTTTTTATTAA |
| Enterobacter sp. 638 | Ent638_2479 | -93 | 3.6 | TTGAATTTATACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1533 | -279 | 3.7 | TTTATTTTCATGAA |
| -243 | 4.5 | TAGATTTAGATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b4123 | -283 | 4 | CCGATAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04367 | -210 | 3.4 | TCTACTCATATCAA |
| Proteus mirabilis HI4320 | PMI0389 | -78 | 3.4 | TTGTTTTTTTGCAA |
| Salmonella typhimurium LT2 | STM4301 | -72 | 3.5 | TTCACAAAAATCAG |
| Serratia proteamaculans 568 | Spro_3863 | -189 | 3.8 | CAGATTAAAATCAA |
| Yersinia pestis KIM | y0901 | -239 | 3.4 | TTAATTTAAAGCAC |
|
Position: -143
Score: 4.6 Sequence: TTGATTAAAGACAA
Locus tag: Salmonellentericaenterica_010100020258
|
||||
| Salmonellentericaenterica_010100020258 | -143 | 4.6 | TTGATTAAAGACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: Nitrite reductase, cytochrome c(552) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03814 | -146 | 4.7 | TTGATTAAAGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1875 | -135 | 4.8 | TTGATCAAAAACAA |
| Escherichia coli str. K-12 substr. MG1655 | b4070 | -141 | 4.7 | TTGATTAAAGACAA |
| Salmonella typhimurium LT2 | STM4277 | -143 | 4.7 | TTGATTAAAGACAA |
|
Position: -17
Score: 3.4 Sequence: TTGAGGTAAAGCGA
Position: -3
Score: 3.3 Sequence: TTTATGGAAAAAAA
Locus tag: Salmonellentericaenterica_010100020313
|
||||
| Salmonellentericaenterica_010100020313 | -17 | 3.4 | TTGAGGTAAAGCGA | |
| -3 | 3.3 | TTTATGGAAAAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: soxR | ||||
| Ortholog function: redox-sensitive transcriptional activator (MerR-family transcriptional regulator) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03827 | -17 | 3.4 | TTGAGGTAAAGCGA |
| Escherichia coli str. K-12 substr. MG1655 | b4063 | -17 | 3.4 | TTGAGGTAAAGCGA |
| Proteus mirabilis HI4320 | PMI2705 | -69 | 3.4 | TTGTATTGGGACAA |
| 16 | 3.7 | TAGATTTTAATCGA | ||
| Salmonella typhimurium LT2 | STM4266 | -17 | 3.4 | TTGAGGTAAAGCGA |
|
Position: -83
Score: 3.8 Sequence: TCGCTTTACCTCAA
Locus tag: Salmonellentericaenterica_010100020318
|
||||
| Salmonellentericaenterica_010100020318 | -83 | 3.8 | TCGCTTTACCTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: soxS | ||||
| Ortholog function: AraC-family transcriptional regulator | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03828 | -83 | 3.8 | TCGCTTTACCTCAA |
| Enterobacter sp. 638 | Ent638_0266 | -217 | 3.8 | ATGCTTTTAATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b4062 | -82 | 3.8 | TCGCTTTACCTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04462 | -95 | 3.4 | TTCTTTTCCATAAA |
| Salmonella typhimurium LT2 | STM4265 | -83 | 3.8 | TCGCTTTACCTCAA |
|
Position: -119
Score: 3.7 Sequence: TTGACATGGATTAA
Locus tag: Salmonellentericaenterica_010100020408
|
||||
| Salmonellentericaenterica_010100020408 | -119 | 3.7 | TTGACATGGATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ynfE | ||||
| Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01581 | -114 | 3.7 | TTGACATGGATTAA |
| Escherichia coli str. K-12 substr. MG1655 | b1587 | -113 | 4.1 | TTGATATGGATTAA |
| Salmonella typhimurium LT2 | STM1499 | -116 | 3.7 | TTGACATGGATTAA |
| Serratia proteamaculans 568 | Spro_1687 | -164 | 4.2 | TTGATAGCAGACAA |
| -40 | 4.2 | ATGACGTTTATCAA | ||
|
Position: -74
Score: 4.9 Sequence: ATGATCTATATCAA
Locus tag: Salmonellentericaenterica_010100020428
|
||||
| Salmonellentericaenterica_010100020428 | -74 | 4.9 | ATGATCTATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: Formate efflux transporter (TC 2.A.44 family) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02167 | -116 | 4.9 | ATGATCTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2181 | -117 | 4.2 | ATGATCCATGTCAA |
| Enterobacter sp. 638 | Ent638_1424 | -74 | 4.9 | ATGATCTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2596 | -228 | 4 | ATGATTTTTATTAA |
| -75 | 4.5 | ATGATCCACATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b0904 | -74 | 4.9 | ATGATCTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00932 | -117 | 4.9 | ATGATCTATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1614 | -267 | 4.1 | TTTATTTGCAACAA |
| -159 | 4.7 | TTTATTAAAATCAA | ||
| -84 | 4.9 | ATGATCTATATCAA | ||
| Proteus mirabilis HI4320 | PMI0706 | -159 | 4.1 | TTATTATTAATCAA |
| -85 | 4.5 | ATGATCCATATCAA | ||
| Salmonella typhimurium LT2 | STM0974 | -74 | 4.9 | ATGATCTATATCAA |
| Serratia proteamaculans 568 | Spro_1703 | -143 | 3.9 | ATAATTTAACTCAA |
| -81 | 4.6 | ATGATCCAAATCAA | ||
| Yersinia pestis KIM | y2789 | -80 | 4.5 | ATGATCCATATCAA |
|
Position: -238
Score: 4.7 Sequence: TTGATTTAGATCAC
Locus tag: Salmonellentericaenterica_010100021059
|
||||
| Salmonellentericaenterica_010100021059 | -238 | 4.7 | TTGATTTAGATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -238 | 4.1 | TTGATCTGGATCAC |
| Enterobacter sp. 638 | Ent638_2304 | -249 | 4.5 | TTGATTCAGATCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -311 | 3.6 | TCGATGTTGATCAC |
| -305 | 3.8 | TTGATCACAAAAAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -237 | 4.3 | TTGATTTGGATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -233 | 4.7 | TTGATCTAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -134 | 4.5 | GTGATTAAGATCAA |
| Proteus mirabilis HI4320 | PMI1486 | -242 | 3.8 | GTGATGTAGATCAC |
| Salmonella typhimurium LT2 | STM1749 | -238 | 4.7 | TTGATTTAGATCAC |
| Serratia proteamaculans 568 | Spro_2704 | -274 | 4.4 | ATGATTTAAATCAC |
|
Position: -117
Score: 4.1 Sequence: TTAATCTGGATCAA
Locus tag: Salmonellentericaenterica_010100021164
|
||||
| Salmonellentericaenterica_010100021164 | -117 | 4.1 | TTAATCTGGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -117 | 4.1 | TTAATCTGGATCAA |
| Edwardsiella tarda EIB202 | ETAE_1528 | -157 | 4.9 | TTGATGTCTATCAA |
| Enterobacter sp. 638 | Ent638_2283 | -117 | 4.1 | TTAATCTGGATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1884 | -160 | 5.4 | TTGATCTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2303 | -160 | 4.8 | TTGATCTGGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -162 | 4.8 | TTGATTTAAATCAC |
| -117 | 4.1 | TTAATCCAGATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01248 | -247 | 4.2 | TTGATTTCACTCAT |
| -80 | 4.1 | TTAATCTGGATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -160 | 5 | TTGATTTGGATCAA |
| Proteus mirabilis HI4320 | PMI1350 | -164 | 4.8 | TTGATGTGGATCAA |
| Salmonella typhimurium LT2 | STM1732 | -117 | 4.1 | TTAATCTGGATCAA |
| Serratia proteamaculans 568 | Spro_2674 | -131 | 5 | TTGATTCAGATCAA |
| Yersinia pestis KIM | y2044 | -171 | 3.6 | ATGATAAATGGCAA |
| -147 | 4.4 | ATGATCCAGATCAA | ||
|
Position: -103
Score: 4.5 Sequence: TTGATCCAGGTCAA
Locus tag: Salmonellentericaenterica_010100022291
|
||||
| Salmonellentericaenterica_010100022291 | -103 | 4.5 | TTGATCCAGGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: upp | ||||
| Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00293 | -103 | 4.6 | TTGATCCATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_1087 | -97 | 4.5 | TTGATTGAGATCAT |
| Enterobacter sp. 638 | Ent638_2986 | -97 | 4.4 | TTGATCACCGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1255 | -169 | 4.3 | TTGATCTGGATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2498 | -95 | 4.6 | TTGACTAAAGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02821 | -96 | 5 | TTGATATACGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2759 | -103 | 5.1 | TTGATGAAAATCAA |
| Proteus mirabilis HI4320 | PMI1574 | -97 | 5.1 | TTGATCAATATCAA |
| Salmonella typhimurium LT2 | STM2498 | -103 | 4.6 | TTGATCCAGGTCAA |
| Yersinia pestis KIM | y1408 | -98 | 4.4 | TTGATCTGAATCAG |
|
Position: -322
Score: 4.4 Sequence: TTGACCTGGATCAA
Locus tag: Salmonellentericaenterica_010100022296
|
||||
| Salmonellentericaenterica_010100022296 | -322 | 4.4 | TTGACCTGGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purM | ||||
| Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_1086 | -186 | 4.7 | ATGATCTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1254 | -198 | 4.3 | CTGATCCAGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2499 | -243 | 4.6 | TTGACTTTAGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2760 | -137 | 5.2 | TTGATTTTCATCAA |
| Proteus mirabilis HI4320 | PMI1575 | -148 | 5 | TTGATATTGATCAA |
| Salmonella typhimurium LT2 | STM2499.S | -309 | 4.4 | TTGACCTGGATCAA |
| Yersinia pestis KIM | y1407 | -312 | 4.5 | CTGATTCAGATCAA |
| -274 | 3.7 | ATGCTAAAAATCAG | ||
|
Position: -51
Score: 3.4 Sequence: CTGATAAAACGCAA
Locus tag: Salmonellentericaenterica_010100023295
|
||||
| Salmonellentericaenterica_010100023295 | -51 | 3.4 | CTGATAAAACGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gdhA | ||||
| Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0051 | -232 | 4.7 | TTGTTATATAACAA |
| Escherichia coli str. K-12 substr. MG1655 | b1761 | -397 | 3.9 | TTGATCCTGATAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0122 | -272 | 4 | ATGATGAATGACAA |
| Proteus mirabilis HI4320 | PMI3008 | -176 | 3.6 | TTTAGTGAGGTCAA |
| Salmonella typhimurium LT2 | STM1299 | -51 | 3.4 | CTGATAAAACGCAA |
| Yersinia pestis KIM | y3858 | -231 | 3.6 | TTGAGTAACGTTAA |
|
Position: -149
Score: 4.8 Sequence: TTGATGCACATCAA
Locus tag: Salmonellentericaenterica_010100023596
|
||||
| Salmonellentericaenterica_010100023596 | -149 | 4.8 | TTGATGCACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01946 | -163 | 5.2 | TTGATGTACATCAA |
| Edwardsiella tarda EIB202 | ETAE_2070 | -162 | 5.1 | TTGATTTGAATCAA |
| Enterobacter sp. 638 | Ent638_1624 | -149 | 5.1 | TTGATTCATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -146 | 4.2 | TTGACCAGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -149 | 5.4 | TTGATATATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -150 | 5.2 | TTGATTAACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -148 | 4.8 | TTGATGCACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -150 | 4.2 | TTGATGTTGTTCAA |
| Proteus mirabilis HI4320 | PMI0875 | -153 | 5.5 | TTGATATAAATCAA |
| Salmonella typhimurium LT2 | STM1211 | -150 | 4.8 | TTGATGCACATCAA |
| Serratia proteamaculans 568 | Spro_1926 | -149 | 5.2 | TTGATGTACATCAA |
| Yersinia pestis KIM | y1777 | -148 | 5.4 | TTGATATATATCAA |
|
Position: -216
Score: 3.7 Sequence: TCGTTTTTTATCAT
Locus tag: Salmonellentericaenterica_010100023721
|
||||
| Salmonellentericaenterica_010100023721 | -216 | 3.7 | TCGTTTTTTATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpT | ||||
| Ortholog function: Glycerol-3-phosphate transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00537 | -257 | 3.7 | TCGTTTTTTATCAT |
| Edwardsiella tarda EIB202 | ETAE_3116 | -301 | 3.8 | GTGATCAAAATCAC |
| Enterobacter sp. 638 | Ent638_2804 | -197 | 4.2 | TTGATTTCGAACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4166 | -249 | 4.3 | TTGATAAAGAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02646 | -214 | 3.8 | TTGATTTCGAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4119 | -306 | 4.2 | TTGATAAAGAACAG |
| Proteus mirabilis HI4320 | PMI3591 | -287 | 4 | TTGATAATGAGCAA |
| -45 | 4.9 | TTGTTTAATATCAA | ||
| Salmonella typhimurium LT2 | STM2283 | -256 | 3.7 | TCGTTTTTTATCAT |
| Serratia proteamaculans 568 | Spro_0199 | -305 | 4.3 | TTGATAAGGAACAA |
|
Position: -32
Score: 3.8 Sequence: ATGATAAAAAACGA
Locus tag: Salmonellentericaenterica_010100023726
|
||||
| Salmonellentericaenterica_010100023726 | -32 | 3.8 | ATGATAAAAAACGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpA | ||||
| Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00536 | -30 | 3.8 | ATGATAAAAAACGA |
| Edwardsiella tarda EIB202 | ETAE_3115 | -78 | 4.1 | TTGCTCCTTATCAA |
| Enterobacter sp. 638 | Ent638_2805 | -69 | 4.3 | ATGTTCGAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4165 | -84 | 4.5 | TTGCTCTTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2241 | -71 | 3.6 | ATGCGCGAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02647 | -71 | 4.1 | ATGCTCGAAATCAA |
| Proteus mirabilis HI4320 | PMI3592 | -107 | 4.2 | TTGCTCATTATCAA |
| Salmonella typhimurium LT2 | STM2284 | -30 | 3.8 | ATGATAAAAAACGA |
| Serratia proteamaculans 568 | Spro_0200 | -74 | 4.3 | TTGTTCCTTATCAA |
| Yersinia pestis KIM | y0404 | -145 | 4.3 | TTGATCACAATCAT |
| -91 | 4.4 | TTGTTTCTTATCAA | ||
|
Position: 15
Score: 3.5 Sequence: TTGATATTAATCCC
Locus tag: Salmonellentericaenterica_010100023896
|
||||
| Salmonellentericaenterica_010100023896 | 15 | 3.5 | TTGATATTAATCCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoM | ||||
| Ortholog function: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00519 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2374 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2277 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02667 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3078 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2317 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3297 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1641 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -232
Score: 4.1 Sequence: GTGAAATAAATCAA
Locus tag: Salmonellentericaenterica_010100024855
|
||||
| Salmonellentericaenterica_010100024855 | -232 | 4.1 | GTGAAATAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: citC | ||||
| Ortholog function: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) | ||||
| Salmonella typhimurium LT2 | STM0624 | -182 | 4.1 | GTGAAATAAATCAA |
|
Position: -191
Score: 4.4 Sequence: TTAATCAAAATCAA
Locus tag: Salmonellentericaenterica_010100025235
|
||||
| Salmonellentericaenterica_010100025235 | -191 | 4.4 | TTAATCAAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdA | ||||
| Ortholog function: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03678 | -151 | 4 | TTAATCAGAATCAA |
| Enterobacter sp. 638 | Ent638_0343 | -31 | 3.6 | TTGCGGAATAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4124 | -239 | 4.1 | |
| Proteus mirabilis HI4320 | PMI3588 | -208 | 4 | |
| Salmonella typhimurium LT2 | STM4343 | -191 | 4.4 | TTAATCAAAATCAA |
| Serratia proteamaculans 568 | Spro_0419 | -63 | 3.7 | TTTATAAATATTAA |
|
Position: -25
Score: 4.4 Sequence: TTGTTAAACAACAA
Locus tag: Salmonellentericaenterica_010100025345
|
||||
| Salmonellentericaenterica_010100025345 | -25 | 4.4 | TTGTTAAACAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuA | ||||
| Ortholog function: C4-dicarboxylate transporter DcuA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03697 | -25 | 4.4 | TTGTTAAACAACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03697 | -25 | 4.4 | TTGTTAAACAACAA |
| Enterobacter sp. 638 | Ent638_0325 | -25 | 3.8 | TTGTTAATAAGCAA |
| Enterobacter sp. 638 | Ent638_0325 | -25 | 3.8 | TTGTTAATAAGCAA |
| Erwinia amylovora ATCC 49946 | EAM_0415 | -194 | 4 | TTGATATAACACGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0620 | -288 | 4 | TTGTTCTAAAATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04528 | -25 | 4.5 | TTGTTAAAAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04528 | -25 | 4.5 | TTGTTAAAAAACAA |
| Salmonella typhimurium LT2 | STM4325 | -25 | 4.4 | TTGTTAAACAACAA |
| Salmonella typhimurium LT2 | STM4325 | -25 | 4.4 | TTGTTAAACAACAA |
|
Position: -126
Score: 3.8 Sequence: TTGATCTACATCTC
Locus tag: Salmonellentericaenterica_010100025446
|
||||
| Salmonellentericaenterica_010100025446 | -126 | 3.8 | TTGATCTACATCTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: katG | ||||
| Ortholog function: Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3942 | -141 | 4.4 | TTAATTAAGATCAA |
| -126 | 3.8 | TTGATCTACATCTC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01819 | -248 | 4.1 | TTGTCATATCTCAA |
| Salmonella typhimurium LT2 | STM4106 | -126 | 3.8 | TTGATCTACATCTC |
| Serratia proteamaculans 568 | Spro_3192 | -139 | 3.7 | TTATTTAAAATCAG |
|
Position: -270
Score: 3.3 Sequence: CTGATATTGATAAT
Position: -261
Score: 3.4 Sequence: ATAATGTAAATGAA
Position: -212
Score: 3.2 Sequence: TCTATATAACTCAT
Position: -90
Score: 3.3 Sequence: CTTATTTACAAAAA
Locus tag: Salmonellentericaenterica_010100025581
|
||||
| Salmonellentericaenterica_010100025581 | -270 | 3.3 | CTGATATTGATAAT | |
| -261 | 3.4 | ATAATGTAAATGAA | ||
| -212 | 3.2 | TCTATATAACTCAT | ||
| -90 | 3.3 | CTTATTTACAAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napF | ||||
| Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2208 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Salmonella typhimurium LT2 | STM2261 | -90 | 3.3 | CTTATTTACAAAAA |
|
Position: -182
Score: 3.9 Sequence: TTGATACCGGACAA
Position: -96
Score: 4.2 Sequence: TCGATATATATCAG
Locus tag: Salmonellentericaenterica_010100025734
|
||||
| Salmonellentericaenterica_010100025734 | -182 | 3.9 | TTGATACCGGACAA | |
| -96 | 4.2 | TCGATATATATCAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dmsA | ||||
| Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02177 | -117 | 3.6 | CTGATTTTTCTCAT |
| Enterobacter sp. 638 | Ent638_1418 | -3 | 3.8 | TCTATGAAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0894 | -184 | 4.3 | TTGATACCGAACAA |
| Salmonella typhimurium LT2 | STM0964 | -96 | 4.2 | |
| Yersinia pestis KIM | y0864 | -199 | 4.2 | TTGATTCCAGACAA |