Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of GntR regulog to Salmonella enterica subsp. enterica serovar Typhi str. E98-3139

Reference regulog properties
Source regulog: GntR - Enterobacteriales  
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Gluconate utilization
Effector: Gluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Orthologous TF(s) Salmonellentericaenterica_010100015451
Regulated genes 3
Built upon 61 sites [see more]
Predicted regulatory interactions in Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Locus tag Position Score Sequence
Position: -251
Score: 4
Sequence: TAATGGTACTGGCGACAGGC
Locus tag: Salmonellentericaenterica_010100004997
Salmonellentericaenterica_010100004997 -251 4 TAATGGTACTGGCGACAGGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnR
Ortholog function: L-idonate utilization transcriptional regulator IdnR, LacI family
Escherichia coli str. K-12 substr. MG1655 b4264 -146 3.8 TAtTtcTACtGaTAAgAaTT
-116 3.8 TcAcGTTAtgcGTAACATag
Salmonella typhimurium LT2 STM4481 -116 4.3 TcAcGTTAtgcGTAACATTg
Citrobacter koseri ATCC BAA-895 CKO_02791 -39 4.8 TACAGTTACGCGTAACAGCT
Serratia proteamaculans 568 Spro_3289 -169 4.4 AGCTGTTACCTTTAACGTGA
Position: -178
Score: 6
Sequence: ATATGTTACCCGTATCATTC
Locus tag: Salmonellentericaenterica_010100006181
Salmonellentericaenterica_010100006181 -178 6 ATATGTTACCCGTATCATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntT
Ortholog function: High-affinity H+/gluconate symporter
Escherichia coli str. K-12 substr. MG1655 b3415 -178 5.9 AGATGTTACCCGTATCATTC
-37 4.9 TGACGTTACCCATAACAAAT
Salmonella typhimurium LT2 STM3512 -178 6 ATATGTTACCCGTATCATTC
-37 4.7 TGACGTTACCCATAACAAAG
Citrobacter koseri ATCC BAA-895 CKO_04836 -178 6 ATATGTTACCCGTATCATTC
-37 4.9 CGACGTTACCCATAACAAAT
Position: -212
Score: 6.1
Sequence: GTATTTTACCGGTAACATGA
Locus tag: Salmonellentericaenterica_010100020924
Salmonellentericaenterica_010100020924 -212 6.1 GTATTTTACCGGTAACATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: edd
Ortholog function: 6-phosphogluconate dehydratase (EC 4.2.1.12)
Escherichia coli str. K-12 substr. MG1655 b1851 -212 6.3 TTATTTTACCGGTAACATGA
Salmonella typhimurium LT2 STM1885 -212 6.1 GTATTTTACCGGTAACATGA
Citrobacter koseri ATCC BAA-895 CKO_01115 -211 6.3 TTATTTTACCGGTAACATGA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02366 -211 6.3 TTATTTTACCGGTAACATGA
-2 5.4 CAATGTTACGGGTAACAAAT
Enterobacter sp. 638 Ent638_2420 -210 6.3 TTATTTTACCGGTAACATGA
Serratia proteamaculans 568 Spro_4499 -73 6.4 CAATGTTACCGATAACATGT
-59 5.5 ACATGTTACCGGTAACAAAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1836 -359 5.9 CATTGTTACCGGTATCATTT
Proteus mirabilis HI4320 PMI2760 -111 5.1 GCTTGTTACCCGTAACAATG
-96 6.4 CAATGTTACCGGTAACAAGT
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