Regulon of Rex in Fervidobacterium nodosum Rt17-B1
| Regulator type: | Transcription factor |
| TF locus tag: | Fnod_0423 |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Regulog: | Rex - Thermotogales |
| Statistics of regulated genes: | |
| - Genes | 18 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By trascription factor - Rex
- By TF family - Rex
- By effector - NADH
- By pathway - Energy metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -52
Score: 5.3 Sequence: TcGTGAAAtaaTTaACgA
Locus tag: Fnod_0319
Name: TM1420 Funciton: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
Locus tag: Fnod_0318
Name: TM1421 Funciton: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
Locus tag: Fnod_0317
Name: TM1423 Funciton: predicted protein serine/threonine phosphatase |
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TM1420
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Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
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TM1421
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Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
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TM1423
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predicted protein serine/threonine phosphatase
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Position: -125
Score: 5 Sequence: TTGTGAAAAaaaTaACgt
Position: -111
Score: 4.7 Sequence: acGTtAtAAaaaTaACAA
Locus tag: Fnod_0227
Name: hydC Funciton: Fe-hydrogenase, gamma subunit, FeS cluster containing
Locus tag: Fnod_0226
Name: hydB Funciton: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity
Locus tag: Fnod_0225
Name: hydA Funciton: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity
Locus tag: Fnod_0224
Name: rex1 Funciton: Redox sensitive transcriptional regulator paralog, Rex family |
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hydC
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Fe-hydrogenase, gamma subunit, FeS cluster containing
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hydB
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Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity
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hydA
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Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity
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rex1
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Redox sensitive transcriptional regulator paralog, Rex family
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Position: -65
Score: 4.5 Sequence: aaGTGAAAAaaaTaACtt
Locus tag: Fnod_0587
Name: noxE2 Funciton: NADH oxidase (EC 1.6.99.3) |
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noxE2
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NADH oxidase (EC 1.6.99.3)
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Position: -78
Score: 5 Sequence: AAGTGATTTTTTTCACAA
Locus tag: Fnod_1174
Name: adhA Funciton: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent |
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adhA
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Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent
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Position: -77
Score: 4.7 Sequence: TTGTacAAtTTTTCACgA
Locus tag: Fnod_0740
Name: gap Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: Fnod_0739
Name: pgk Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
Locus tag: Fnod_0738
Name: tpi Funciton: Triosephosphate isomerase (EC 5.3.1.1) |
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gap
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NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
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pgk
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Phosphoglycerate kinase (EC 2.7.2.3)
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tpi
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Triosephosphate isomerase (EC 5.3.1.1)
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Position: -86
Score: 4.6 Sequence: TAGTGAAAAACTTGACAA
Locus tag: Fnod_0241
Name: TM0179 Funciton: hypothetical protein |
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TM0179
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hypothetical protein
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Position: -38
Score: 4.8 Sequence: ATGTTATAATAATCACGA
Locus tag: Fnod_0995
Name: hycA Funciton: NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
Locus tag: Fnod_0994
Name: hycB Funciton: NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
Locus tag: Fnod_0993
Name: hycC Funciton: NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
Locus tag: Fnod_0992
Name: hycE Funciton: NAD-reducing Fe-hydrogenase, subunit HycE (EC 1.12.7.2)
Locus tag: Fnod_0991
Name: hycF Funciton: NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2) |
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hycA
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NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
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hycB
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NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
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hycC
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NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
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hycE
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NAD-reducing Fe-hydrogenase, subunit HycE (EC 1.12.7.2)
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hycF
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NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |