Regulon of Rex in Thermosipho melanesiensis BI429
| Regulator type: | Transcription factor |
| TF locus tag: | Tmel_1209 |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Regulog: | Rex - Thermotogales |
| Statistics of regulated genes: | |
| - Genes | 19 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By trascription factor - Rex
- By TF family - Rex
- By effector - NADH
- By pathway - Energy metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -43
Score: 5 Sequence: TcGTGAAAAaTaTaACgt
Position: -29
Score: 4.9 Sequence: acGTtAtttaTTTCACgA
Locus tag: Tmel_0495
Name: TM1420 Funciton: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
Locus tag: Tmel_0494
Name: TM1421 Funciton: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
Locus tag: Tmel_0493
Name: TM1423 Funciton: predicted protein serine/threonine phosphatase
Locus tag: Tmel_0492
Name: hydC Funciton: Fe-hydrogenase, gamma subunit, FeS cluster containing
Locus tag: Tmel_0491
Name: hydB Funciton: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity
Locus tag: Tmel_0490
Name: hydA Funciton: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity
Locus tag: Tmel_0489
Name: rex1 Funciton: Redox sensitive transcriptional regulator paralog, Rex family |
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TM1420
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Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
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TM1421
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Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
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TM1423
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predicted protein serine/threonine phosphatase
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hydC
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Fe-hydrogenase, gamma subunit, FeS cluster containing
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hydB
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Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity
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hydA
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Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity
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rex1
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Redox sensitive transcriptional regulator paralog, Rex family
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Position: -95
Score: 4.7 Sequence: ccGTGAAAAaaaTaACgA
Position: -29
Score: 5.1 Sequence: TTGTGAAAATATTCACAG
Locus tag: Tmel_0139
Name: adhA Funciton: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent |
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adhA
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Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent
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Position: -31
Score: 5.2 Sequence: TAGTTAAAAAAATCACAA
Locus tag: Tmel_0141
Name: noxE2 Funciton: NADH oxidase (EC 1.6.99.3) |
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noxE2
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NADH oxidase (EC 1.6.99.3)
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Position: -108
Score: 4.7 Sequence: TTGTGAtAtaaTTtACtt
Locus tag: Tmel_1601
Name: hycD Funciton: NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2) |
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hycD
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NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2)
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Position: -59
Score: 4.9 Sequence: TTGTGAAAAATATATCAT
Locus tag: Tmel_1229
Name: noxE Funciton: NADH oxidase (EC 1.6.99.3) |
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noxE
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NADH oxidase (EC 1.6.99.3)
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Position: -45
Score: 5.2 Sequence: TaGTaAAAtTTTTCACgA
Locus tag: Tmel_1266
Name: gap Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: Tmel_1265
Name: pgk Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
Locus tag: Tmel_1264
Name: tpi Funciton: Triosephosphate isomerase (EC 5.3.1.1) |
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gap
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NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
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pgk
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Phosphoglycerate kinase (EC 2.7.2.3)
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tpi
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Triosephosphate isomerase (EC 5.3.1.1)
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Position: -68
Score: 4.5 Sequence: aaGTGAAttTTTTtACtt
Position: 9
Score: 4.2 Sequence: TTGTGAAAAacaTgtCgA
Locus tag: Tmel_1172
Name: hycA Funciton: NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
Locus tag: Tmel_1171
Name: hycB Funciton: NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
Locus tag: Tmel_1170
Name: hycC Funciton: NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
Locus tag: Tmel_1169
Name: hycE Funciton: NAD-reducing Fe-hydrogenase, subunit HycE (EC 1.12.7.2)
Locus tag: Tmel_1168
Name: hycF Funciton: NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2) |
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hycA
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NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
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hycB
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NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
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hycC
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NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
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hycE
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NAD-reducing Fe-hydrogenase, subunit HycE (EC 1.12.7.2)
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hycF
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NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |