Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Rex in Thermotoga petrophila RKU-1

Properties
Regulator type: Transcription factor
TF locus tag: Tpet_0756
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Regulog: Rex - Thermotogales
Statistics of regulated genes:
- Genes 40
- Operons 13
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 114 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -62
Score: 4.7
Sequence: ATGTTATCATTTTCACAA
Position: -41
Score: 5.1
Sequence: TTGAGATTTTTTTCACAA
Locus tag: Tpet_1758
Name: TM0983
Funciton: conserved hypothetical protein, SirA family
Locus tag: Tpet_1759
Name: TM0982
Funciton: protein of unknown function DUF395 YeeE/YedE
Locus tag: Tpet_1760
Name: TM0981
Funciton: DsrE family protein
Locus tag: Tpet_1761
Name: TM0980
Funciton: uncharacterized protein involved in the oxidation of intracellular sulfur-like protein
Locus tag: Tpet_1762
Name: TM0979
Funciton: DsrH family protein
Tpet_1758
TM0983
conserved hypothetical protein, SirA family
Tpet_1759
TM0982
protein of unknown function DUF395 YeeE/YedE
Tpet_1760
TM0981
DsrE family protein
Tpet_1761
TM0980
uncharacterized protein involved in the oxidation of intracellular sulfur-like protein
Tpet_1762
TM0979
DsrH family protein
Position: -52
Score: 5.5
Sequence: TCGTGAAAAATTTAACAA
Locus tag: Tpet_0498
Name: gldA
Funciton: Glycerol dehydrogenase (EC 1.1.1.6)
Tpet_0498
gldA
Glycerol dehydrogenase (EC 1.1.1.6)
Position: -177
Score: 4.9
Sequence: GAGTAAAATATTTCACAA
Locus tag: Tpet_1206
Name: TM1586
Funciton: Putative oxidoreductase, COG0778
Locus tag: Tpet_1207
Name: gckA
Funciton: D-glycerate 2-kinase (EC 2.7.1.-), GK-II family
Tpet_1206
TM1586
Putative oxidoreductase, COG0778
Tpet_1207
gckA
D-glycerate 2-kinase (EC 2.7.1.-), GK-II family
Position: -47
Score: 5.1
Sequence: TAGTTAAAAAAATAACAA
Locus tag: Tpet_1383
Name: sat
Funciton: Serine aminotransferase (EC 2.6.5.1)
Locus tag: Tpet_1382
Name: hpr
Funciton: Hydroxypyruvate reductase (EC 1.1.1.81)
Tpet_1383
sat
Serine aminotransferase (EC 2.6.5.1)
Tpet_1382
hpr
Hydroxypyruvate reductase (EC 1.1.1.81)
Position: -217
Score: 5
Sequence: GTGAGAAAATTTTCACAA
Position: -193
Score: 4.7
Sequence: TTGTTATGAAATTCACAA
Locus tag: Tpet_0563
Name: adhA
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent
Tpet_0563
adhA
Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent
Position: -40
Score: 4.9
Sequence: ATGATAAAATTATCACAA
Locus tag: Tpet_1099
Name: cas6
Funciton: CRISPR/Cas system-associated RAMP superfamily protein Cas6
Locus tag: Tpet_1098
Name: csx1
Funciton: CRISPR/Cas system-associated protein Csx1
Locus tag: Tpet_1097
Name: cas10
Funciton: CRISPR/Cas system-associated protein Cas10
Locus tag: Tpet_1096
Name: csm2
Funciton: CRISPR/Cas system-associated protein Csm2
Locus tag: Tpet_1095
Name: csm3
Funciton: CRISPR/Cas system-associated RAMP superfamily protein Csm3
Locus tag: Tpet_1094
Name: csm4
Funciton: CRISPR/Cas system-associated RAMP superfamily protein Csm4
Locus tag: Tpet_1093
Name: csm5
Funciton: CRISPR/Cas system-associated RAMP superfamily protein Csm5
Locus tag: Tpet_1092
Name: TM1806
Funciton: hypothetical protein
Tpet_1099
cas6
CRISPR/Cas system-associated RAMP superfamily protein Cas6
Tpet_1098
csx1
CRISPR/Cas system-associated protein Csx1
Tpet_1097
cas10
CRISPR/Cas system-associated protein Cas10
Tpet_1096
csm2
CRISPR/Cas system-associated protein Csm2
Tpet_1095
csm3
CRISPR/Cas system-associated RAMP superfamily protein Csm3
Tpet_1094
csm4
CRISPR/Cas system-associated RAMP superfamily protein Csm4
Tpet_1093
csm5
CRISPR/Cas system-associated RAMP superfamily protein Csm5
Tpet_1092
TM1806
hypothetical protein
Position: -32
Score: 4.8
Sequence: TCGTGAAAAAATTCTCTT
Locus tag: Tpet_0530
Name: noxE
Funciton: NADH oxidase (EC 1.6.99.3)
Tpet_0530
noxE
NADH oxidase (EC 1.6.99.3)
Position: -54
Score: 5.3
Sequence: TTGAGAAATTTATCACAA
Locus tag: Tpet_0723
Name: hycD
Funciton: NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2)
Tpet_0723
hycD
NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2)
Position: -69
Score: 5
Sequence: TaGTGAAAAaTaTaACgt
Locus tag: Tpet_1372
Name: TM1420
Funciton: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
Locus tag: Tpet_1371
Name: TM1421
Funciton: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
Locus tag: Tpet_1370
Name: TM1423
Funciton: predicted protein serine/threonine phosphatase
Locus tag: Tpet_1369
Name: hydC
Funciton: Fe-hydrogenase, gamma subunit, FeS cluster containing
Locus tag: Tpet_1368
Name: hydB
Funciton: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity
Locus tag: Tpet_1367
Name: hydA
Funciton: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity
Locus tag: Tpet_1366
Name: rex1
Funciton: Redox sensitive transcriptional regulator paralog, Rex family
Tpet_1372
TM1420
Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
Tpet_1371
TM1421
Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
Tpet_1370
TM1423
predicted protein serine/threonine phosphatase
Tpet_1369
hydC
Fe-hydrogenase, gamma subunit, FeS cluster containing
Tpet_1368
hydB
Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity
Tpet_1367
hydA
Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity
Tpet_1366
rex1
Redox sensitive transcriptional regulator paralog, Rex family
Position: -104
Score: 5.1
Sequence: TAGTTATTTTTTTCACGA
Locus tag: Tpet_0245
Name: dnaX
Funciton: DNA polymerase III subunits gamma and tau
Locus tag: Tpet_0244
Name: TM0687
Funciton: conserved probable DNA binding protein, similar to YbaB family
Locus tag: Tpet_0243
Name: gap
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: Tpet_0242
Name: pgk
Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
Locus tag: Tpet_0241
Name: tpi
Funciton: Triosephosphate isomerase (EC 5.3.1.1)
Tpet_0245
dnaX
DNA polymerase III subunits gamma and tau
Tpet_0244
TM0687
conserved probable DNA binding protein, similar to YbaB family
Tpet_0243
gap
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Tpet_0242
pgk
Phosphoglycerate kinase (EC 2.7.2.3)
Tpet_0241
tpi
Triosephosphate isomerase (EC 5.3.1.1)
Position: -30
Score: 5.3
Sequence: TTGTGAAATTTTTGACGA
Locus tag: Tpet_0697
Name: hycE
Funciton: NAD-reducing Fe-hydrogenase, subunit HycE (EC 1.12.7.2)
Locus tag: Tpet_0696
Name: hycF
Funciton: NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2)
Tpet_0697
hycE
NAD-reducing Fe-hydrogenase, subunit HycE (EC 1.12.7.2)
Tpet_0696
hycF
NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2)
Position: -69
Score: 4.3
Sequence: ATGTGAAAAAAATATCAG
Position: -44
Score: 5
Sequence: TTGTGAAAAAATTCCCGA
Locus tag: Tpet_0911
Name: hycA
Funciton: NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
Locus tag: Tpet_0912
Name: hycB
Funciton: NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
Locus tag: Tpet_0913
Name: hycC
Funciton: NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
Locus tag: Tpet_0914
Name: TM0009
Funciton: rubrerythrin
Tpet_0911
hycA
NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
Tpet_0912
hycB
NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
Tpet_0913
hycC
NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
Tpet_0914
TM0009
rubrerythrin
Position: -30
Score: 4.6
Sequence: TTGTTATAATAGTAACAA
Locus tag: Tpet_0745
Name: TM0179
Funciton: hypothetical protein
Tpet_0745
TM0179
hypothetical protein
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