Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Rex in Thermotoga neapolitana DSM 4359

Properties
Regulator type: Transcription factor
TF locus tag: CTN_0518
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Regulog: Rex - Thermotogales
Statistics of regulated genes:
- Genes 32
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 114 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -51
Score: 5
Sequence: TaGTGAAAAaTaTaACgt
Locus tag: CTN_1072
Name: TM1420
Funciton: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
Locus tag: CTN_1071
Name: TM1421
Funciton: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
Locus tag: CTN_1070
Name: TM1423
Funciton: predicted protein serine/threonine phosphatase
Locus tag: CTN_1069
Name: hydC
Funciton: Fe-hydrogenase, gamma subunit, FeS cluster containing
Locus tag: CTN_1068
Name: hydB
Funciton: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity
Locus tag: CTN_1067
Name: hydA
Funciton: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity
Locus tag: CTN_1066
Name: rex1
Funciton: Redox sensitive transcriptional regulator paralog, Rex family
CTN_1072
TM1420
Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
CTN_1071
TM1421
Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
CTN_1070
TM1423
predicted protein serine/threonine phosphatase
CTN_1069
hydC
Fe-hydrogenase, gamma subunit, FeS cluster containing
CTN_1068
hydB
Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity
CTN_1067
hydA
Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity
CTN_1066
rex1
Redox sensitive transcriptional regulator paralog, Rex family
Position: -30
Score: 4.1
Sequence: TTGTGAAATACGTAACAT
Locus tag: CTN_0247
Name: gldA
Funciton: Glycerol dehydrogenase (EC 1.1.1.6)
CTN_0247
gldA
Glycerol dehydrogenase (EC 1.1.1.6)
Position: -47
Score: 5.1
Sequence: TAGTTAAAAAAATAACAA
Locus tag: CTN_1191
Name: sat
Funciton: Serine aminotransferase (EC 2.6.5.1)
Locus tag: CTN_1190
Name: hpr
Funciton: Hydroxypyruvate reductase (EC 1.1.1.81)
CTN_1191
sat
Serine aminotransferase (EC 2.6.5.1)
CTN_1190
hpr
Hydroxypyruvate reductase (EC 1.1.1.81)
Position: -32
Score: 5.1
Sequence: TTGAGATTTTTTTCACAA
Locus tag: CTN_1595
Name: TM0983
Funciton: conserved hypothetical protein, SirA family
Locus tag: CTN_1596
Name: TM0982
Funciton: protein of unknown function DUF395 YeeE/YedE
Locus tag: CTN_1597
Name: TM0981
Funciton: DsrE family protein
Locus tag: CTN_1598
Name: TM0980
Funciton: uncharacterized protein involved in the oxidation of intracellular sulfur-like protein
Locus tag: CTN_1599
Name: TM0979
Funciton: DsrH family protein
CTN_1595
TM0983
conserved hypothetical protein, SirA family
CTN_1596
TM0982
protein of unknown function DUF395 YeeE/YedE
CTN_1597
TM0981
DsrE family protein
CTN_1598
TM0980
uncharacterized protein involved in the oxidation of intracellular sulfur-like protein
CTN_1599
TM0979
DsrH family protein
Position: 117
Score: 4.9
Sequence: aTGatAAAATTaTCACAA
Locus tag: CTN_0700
Name: cas6
Funciton: CRISPR/Cas system-associated RAMP superfamily protein Cas6
Locus tag: CTN_0701
Name: csx1
Funciton: CRISPR/Cas system-associated protein Csx1
Locus tag: CTN_0702
Name: cas10
Funciton: CRISPR/Cas system-associated protein Cas10
CTN_0700
cas6
CRISPR/Cas system-associated RAMP superfamily protein Cas6
CTN_0701
csx1
CRISPR/Cas system-associated protein Csx1
CTN_0702
cas10
CRISPR/Cas system-associated protein Cas10
Position: -34
Score: 4.6
Sequence: TTGTGAAATCTTTCTCTT
Locus tag: CTN_0317
Name: noxE
Funciton: NADH oxidase (EC 1.6.99.3)
CTN_0317
noxE
NADH oxidase (EC 1.6.99.3)
Position: 0
Score: 5.1
Sequence: TTGAGAATTTTATCACAA
Locus tag: CTN_0485
Name: hycD
Funciton: NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2)
CTN_0485
hycD
NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2)
Position: -103
Score: 5.1
Sequence: TAGTTATTTTTTTCACGA
Locus tag: CTN_1900
Name: dnaX
Funciton: DNA polymerase III subunits gamma and tau
Locus tag: CTN_1899
Name: TM0687
Funciton: conserved probable DNA binding protein, similar to YbaB family
Locus tag: CTN_1898
Name: gap
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: CTN_1897
Name: pgk
Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
Locus tag: CTN_1896
Name: tpi
Funciton: Triosephosphate isomerase (EC 5.3.1.1)
CTN_1900
dnaX
DNA polymerase III subunits gamma and tau
CTN_1899
TM0687
conserved probable DNA binding protein, similar to YbaB family
CTN_1898
gap
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
CTN_1897
pgk
Phosphoglycerate kinase (EC 2.7.2.3)
CTN_1896
tpi
Triosephosphate isomerase (EC 5.3.1.1)
Position: -61
Score: 4.3
Sequence: ATGTGAAAAAAATATCAG
Position: -36
Score: 5.2
Sequence: TTGTGAAAAAATTCTCGA
Locus tag: CTN_0686
Name: hycA
Funciton: NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
Locus tag: CTN_0687
Name: hycB
Funciton: NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
Locus tag: CTN_0688
Name: hycC
Funciton: NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
Locus tag: CTN_0689
Name: TM0009
Funciton: rubrerythrin
CTN_0686
hycA
NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
CTN_0687
hycB
NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
CTN_0688
hycC
NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
CTN_0689
TM0009
rubrerythrin
Position: 8
Score: 5.3
Sequence: TTGTGAAATTTTTGACGA
Locus tag: CTN_0459
Name: hycE
Funciton: NAD-reducing Fe-hydrogenase, subunit HycE (EC 1.12.7.2)
Locus tag: CTN_0458
Name: hycF
Funciton: NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2)
CTN_0459
hycE
NAD-reducing Fe-hydrogenase, subunit HycE (EC 1.12.7.2)
CTN_0458
hycF
NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2)
Position: -30
Score: 4.4
Sequence: TTGTTATAATGATATCAA
Locus tag: CTN_0508
Name: TM0179
Funciton: hypothetical protein
CTN_0508
TM0179
hypothetical protein
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