Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Rex in Thermotoga sp. RQ2

Properties
Regulator type: Transcription factor
TF locus tag: TRQ2_0779
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Regulog: Rex - Thermotogales
Statistics of regulated genes:
- Genes 32
- Operons 13
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 114 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -51
Score: 5
Sequence: TaGTGAAAAaTaTaACgt
Locus tag: TRQ2_1314
Name: TM1420
Funciton: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
Locus tag: TRQ2_1315
Name: TM1421
Funciton: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
Locus tag: TRQ2_1316
Name: TM1423
Funciton: predicted protein serine/threonine phosphatase
Locus tag: TRQ2_1317
Name: hydC
Funciton: Fe-hydrogenase, gamma subunit, FeS cluster containing
Locus tag: TRQ2_1318
Name: hydB
Funciton: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity
Locus tag: TRQ2_1319
Name: hydA
Funciton: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity
Locus tag: TRQ2_1320
Name: rex1
Funciton: Redox sensitive transcriptional regulator paralog, Rex family
TRQ2_1314
TM1420
Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
TRQ2_1315
TM1421
Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
TRQ2_1316
TM1423
predicted protein serine/threonine phosphatase
TRQ2_1317
hydC
Fe-hydrogenase, gamma subunit, FeS cluster containing
TRQ2_1318
hydB
Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity
TRQ2_1319
hydA
Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity
TRQ2_1320
rex1
Redox sensitive transcriptional regulator paralog, Rex family
Position: -62
Score: 4.7
Sequence: ATGTTATCATTTTCACAA
Position: -41
Score: 5.1
Sequence: TTGAGATTTTTTTCACAA
Locus tag: TRQ2_1812
Name: TM0983
Funciton: conserved hypothetical protein, SirA family
TRQ2_1812
TM0983
conserved hypothetical protein, SirA family
Position: -52
Score: 5.5
Sequence: TCGTGAAAAATTTAACAA
Locus tag: TRQ2_0522
Name: gldA
Funciton: Glycerol dehydrogenase (EC 1.1.1.6)
TRQ2_0522
gldA
Glycerol dehydrogenase (EC 1.1.1.6)
Position: -177
Score: 4.9
Sequence: GAGTAAAATATTTCACAA
Locus tag: TRQ2_1249
Name: TM1586
Funciton: Putative oxidoreductase, COG0778
Locus tag: TRQ2_1248
Name: gckA
Funciton: D-glycerate 2-kinase (EC 2.7.1.-), GK-II family
TRQ2_1249
TM1586
Putative oxidoreductase, COG0778
TRQ2_1248
gckA
D-glycerate 2-kinase (EC 2.7.1.-), GK-II family
Position: -47
Score: 5.1
Sequence: TAGTTAAAAAAATAACAA
Locus tag: TRQ2_1429
Name: sat
Funciton: Serine aminotransferase (EC 2.6.5.1)
Locus tag: TRQ2_1428
Name: hpr
Funciton: Hydroxypyruvate reductase (EC 1.1.1.81)
TRQ2_1429
sat
Serine aminotransferase (EC 2.6.5.1)
TRQ2_1428
hpr
Hydroxypyruvate reductase (EC 1.1.1.81)
Position: -85
Score: 5
Sequence: GTGAGAAAATTTTCACAA
Position: -61
Score: 4.7
Sequence: TTGTTATGAAATTCACAA
Locus tag: TRQ2_0578
Name: adhA
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent
TRQ2_0578
adhA
Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent
Position: -54
Score: 5.3
Sequence: TTGAGAAATTTATCACAA
Locus tag: TRQ2_0747
Name: hycD
Funciton: NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2)
TRQ2_0747
hycD
NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2)
Position: -40
Score: 4.9
Sequence: ATGATAAAATTATCACAA
Locus tag: TRQ2_1007
Name: cas6
Funciton: CRISPR/Cas system-associated RAMP superfamily protein Cas6
Locus tag: TRQ2_1008
Name: csx1
Funciton: CRISPR/Cas system-associated protein Csx1
Locus tag: TRQ2_1009
Name: cas10
Funciton: CRISPR/Cas system-associated protein Cas10
Locus tag: TRQ2_1010
Name: csm2
Funciton: CRISPR/Cas system-associated protein Csm2
Locus tag: TRQ2_1011
Name: csm3
Funciton: CRISPR/Cas system-associated RAMP superfamily protein Csm3
Locus tag: TRQ2_1012
Name: csm4
Funciton: CRISPR/Cas system-associated RAMP superfamily protein Csm4
Locus tag: TRQ2_1013
Name: csm5
Funciton: CRISPR/Cas system-associated RAMP superfamily protein Csm5
Locus tag: TRQ2_1014
Name: TM1806
Funciton: hypothetical protein
TRQ2_1007
cas6
CRISPR/Cas system-associated RAMP superfamily protein Cas6
TRQ2_1008
csx1
CRISPR/Cas system-associated protein Csx1
TRQ2_1009
cas10
CRISPR/Cas system-associated protein Cas10
TRQ2_1010
csm2
CRISPR/Cas system-associated protein Csm2
TRQ2_1011
csm3
CRISPR/Cas system-associated RAMP superfamily protein Csm3
TRQ2_1012
csm4
CRISPR/Cas system-associated RAMP superfamily protein Csm4
TRQ2_1013
csm5
CRISPR/Cas system-associated RAMP superfamily protein Csm5
TRQ2_1014
TM1806
hypothetical protein
Position: -32
Score: 5
Sequence: TCGTGAAAAATTTCTCTT
Locus tag: TRQ2_0544
Name: noxE
Funciton: NADH oxidase (EC 1.6.99.3)
TRQ2_0544
noxE
NADH oxidase (EC 1.6.99.3)
Position: -104
Score: 5.1
Sequence: TAGTTATTTTTTTCACGA
Locus tag: TRQ2_0243
Name: dnaX
Funciton: DNA polymerase III subunits gamma and tau
TRQ2_0243
dnaX
DNA polymerase III subunits gamma and tau
Position: -30
Score: 4.6
Sequence: TTGTTATAATAGTAACAA
Locus tag: TRQ2_0769
Name: TM0179
Funciton: hypothetical protein
TRQ2_0769
TM0179
hypothetical protein
Position: -30
Score: 5.3
Sequence: TTGTGAAATTTTTGACGA
Locus tag: TRQ2_0721
Name: hycE
Funciton: NAD-reducing Fe-hydrogenase, subunit HycE (EC 1.12.7.2)
Locus tag: TRQ2_0720
Name: hycF
Funciton: NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2)
TRQ2_0721
hycE
NAD-reducing Fe-hydrogenase, subunit HycE (EC 1.12.7.2)
TRQ2_0720
hycF
NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2)
Position: -69
Score: 4.3
Sequence: ATGTGAAAAAAATATCAG
Position: -44
Score: 5
Sequence: TTGTGAAAAAATTCCCGA
Locus tag: TRQ2_0933
Name: hycA
Funciton: NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
Locus tag: TRQ2_0934
Name: hycB
Funciton: NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
Locus tag: TRQ2_0935
Name: hycC
Funciton: NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
Locus tag: TRQ2_0936
Name: TM0009
Funciton: rubrerythrin
TRQ2_0933
hycA
NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
TRQ2_0934
hycB
NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
TRQ2_0935
hycC
NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
TRQ2_0936
TM0009
rubrerythrin
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise