Regulon of Rex in Thermotoga maritima MSB8
| Regulator type: | Transcription factor |
| TF locus tag: | TM0169 |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Regulog: | Rex - Thermotogales |
| Statistics of regulated genes: | |
| - Genes | 39 |
| - Operons | 12 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By trascription factor - Rex
- By TF family - Rex
- By effector - NADH
- By pathway - Energy metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -177
Score: 4.9 Sequence: GAGTAAAATATTTCACAA
Locus tag: TM1586
Name: TM1586 Funciton: Putative oxidoreductase, COG0778
Locus tag: TM1585
Name: gckA Funciton: D-glycerate 2-kinase (EC 2.7.1.-), GK-II family |
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TM1586
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Putative oxidoreductase, COG0778
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gckA
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D-glycerate 2-kinase (EC 2.7.1.-), GK-II family
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Position: -52
Score: 5.5 Sequence: TCGTGAAAAATTTAACAA
Locus tag: TM0423
Name: gldA Funciton: Glycerol dehydrogenase (EC 1.1.1.6) |
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gldA
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Glycerol dehydrogenase (EC 1.1.1.6)
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Position: -47
Score: 5.1 Sequence: TAGTTAAAAAAATAACAA
Locus tag: TM1400
Name: sat Funciton: Serine aminotransferase (EC 2.6.5.1)
Locus tag: TM1401
Name: hpr Funciton: Hydroxypyruvate reductase (EC 1.1.1.81) |
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sat
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Serine aminotransferase (EC 2.6.5.1)
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hpr
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Hydroxypyruvate reductase (EC 1.1.1.81)
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Position: -41
Score: 5.1 Sequence: TTGAGATTTTTTTCACAA
Locus tag: TM0983
Name: TM0983 Funciton: conserved hypothetical protein, SirA family
Locus tag: TM0982
Name: TM0982 Funciton: protein of unknown function DUF395 YeeE/YedE
Locus tag: TM0981
Name: TM0981 Funciton: DsrE family protein
Locus tag: TM0980
Name: TM0980 Funciton: uncharacterized protein involved in the oxidation of intracellular sulfur-like protein
Locus tag: TM0979
Name: TM0979 Funciton: DsrH family protein |
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TM0983
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conserved hypothetical protein, SirA family
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TM0982
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protein of unknown function DUF395 YeeE/YedE
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TM0981
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DsrE family protein
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TM0980
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uncharacterized protein involved in the oxidation of intracellular sulfur-like protein
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TM0979
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DsrH family protein
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Position: 24
Score: 5.3 Sequence: TTGAGAAATTTATCACAA
Locus tag: TM0201
Name: hycD Funciton: NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2) |
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hycD
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NAD-reducing Fe-hydrogenase, subunit HycD (EC 1.12.7.2)
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Position: -104
Score: 5.1 Sequence: TaGTtAtttTTTTCACgA
Locus tag: TM0686
Name: dnaX Funciton: DNA polymerase III subunits gamma and tau
Locus tag: TM0687
Name: TM0687 Funciton: conserved probable DNA binding protein, similar to YbaB family
Locus tag: TM0688
Name: gap Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: TM0689
Name: pgk Funciton: Phosphoglycerate kinase (EC 2.7.2.3) |
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dnaX
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DNA polymerase III subunits gamma and tau
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TM0687
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conserved probable DNA binding protein, similar to YbaB family
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gap
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NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
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pgk
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Phosphoglycerate kinase (EC 2.7.2.3)
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Position: -32
Score: 5 Sequence: TCGTGAAAAATTTCTCTT
Locus tag: TM0379
Name: noxE Funciton: NADH oxidase (EC 1.6.99.3) |
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noxE
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NADH oxidase (EC 1.6.99.3)
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Position: -40
Score: 4.9 Sequence: ATGATAAAATTATCACAA
Locus tag: TM1814
Name: cas6 Funciton: CRISPR/Cas system-associated RAMP superfamily protein Cas6
Locus tag: TM1813
Name: null Funciton: hypothetical protein
Locus tag: TM1812
Name: csx1 Funciton: CRISPR/Cas system-associated protein Csx1
Locus tag: TM1811
Name: cas10 Funciton: CRISPR/Cas system-associated protein Cas10
Locus tag: TM1810
Name: csm2 Funciton: CRISPR/Cas system-associated protein Csm2
Locus tag: TM1809
Name: csm3 Funciton: CRISPR/Cas system-associated RAMP superfamily protein Csm3
Locus tag: TM1808
Name: csm4 Funciton: CRISPR/Cas system-associated RAMP superfamily protein Csm4
Locus tag: TM1807
Name: csm5 Funciton: CRISPR/Cas system-associated RAMP superfamily protein Csm5
Locus tag: TM1806
Name: TM1806 Funciton: hypothetical protein |
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cas6
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CRISPR/Cas system-associated RAMP superfamily protein Cas6
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hypothetical protein
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csx1
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CRISPR/Cas system-associated protein Csx1
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cas10
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CRISPR/Cas system-associated protein Cas10
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csm2
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CRISPR/Cas system-associated protein Csm2
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csm3
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CRISPR/Cas system-associated RAMP superfamily protein Csm3
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csm4
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CRISPR/Cas system-associated RAMP superfamily protein Csm4
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csm5
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CRISPR/Cas system-associated RAMP superfamily protein Csm5
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TM1806
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hypothetical protein
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Position: -30
Score: 4.6 Sequence: TTGTTATAATAGTAACAA
Locus tag: TM0179
Name: TM0179 Funciton: hypothetical protein |
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TM0179
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hypothetical protein
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Position: -45
Score: 5 Sequence: TaGTGAAAAaTaTaACgt
Locus tag: TM1420
Name: TM1420 Funciton: Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
Locus tag: TM1421
Name: TM1421 Funciton: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
Locus tag: TM1422
Name: TM1421 Funciton: Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
Locus tag: TM1423
Name: TM1423 Funciton: predicted protein serine/threonine phosphatase
Locus tag: TM1424
Name: hydC Funciton: Fe-hydrogenase, gamma subunit, FeS cluster containing
Locus tag: TM1425
Name: hydB Funciton: Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity
Locus tag: TM1426
Name: hydA Funciton: Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity
Locus tag: TM1427
Name: rex1 Funciton: Redox sensitive transcriptional regulator paralog, Rex family |
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TM1420
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Fe-hydrogenase, thioredoxin subunit, 2Fe-2S cluster binding protein
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TM1421
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Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
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TM1421
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Fe-hydrogenase, 2Fe-2S iron-sulfur cluster binding protein
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TM1423
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predicted protein serine/threonine phosphatase
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hydC
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Fe-hydrogenase, gamma subunit, FeS cluster containing
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hydB
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Fe-hydrogenase, beta subunit, FeS cluster, FMN, NAD(P)H dehydrogenase activity
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hydA
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Fe-hydrogenase, alpha subunit, FeS cluster, hydrogenase activity
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rex1
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Redox sensitive transcriptional regulator paralog, Rex family
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Position: -499
Score: 5.3 Sequence: TTGTGAAATTTTTGACGA
Locus tag: TM0228
Name: hycF Funciton: NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2) |
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hycF
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NAD-reducing Fe-hydrogenase, subunit HycF (EC 1.12.7.2)
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Position: -27
Score: 4.3 Sequence: aTGTGAAAAaaaTatCAg
Position: -2
Score: 5 Sequence: TTGTGAAAAaaTTCcCgA
Locus tag: TM0012
Name: hycA Funciton: NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
Locus tag: TM0011
Name: hycB Funciton: NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
Locus tag: TM0010
Name: hycC Funciton: NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
Locus tag: TM0009
Name: TM0009 Funciton: rubrerythrin |
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hycA
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NAD-reducing Fe-hydrogenase, subunit HycA (EC 1.12.7.2)
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hycB
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NAD-reducing Fe-hydrogenase, subunit HycB (EC 1.12.7.2)
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hycC
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NAD-reducing Fe-hydrogenase, subunit HycC (EC 1.12.7.2)
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TM0009
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rubrerythrin
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |